Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011523

Physical Location & Seq

Genomic Coordinates Reverse (-)

18330465 .. 18335074

Gene Structure 4610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G244700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGTCTCCTGCTCGAGTGAAAAACCCAAGAATTCTTGAGAATAAGATTGAATGTCAGACACCGGAGAAGATAAACGAGCCTTTAAACACCAAATACCACGAGGGATATAGGATTATGGCAGACTTCTTTGACCATATGAATTGTTCCTTGAGGTTGCTTCGTCTGCGTAAAAGGTCACCTACTTTTCAAAATATTTCTACTCAGGTGGAAGTCCTAGCGAAGCGAAAGTTCTTGTACAAGCATCTTGCTCAAATGAAATTTATACTTCCTGAAGCTATAAAGATAGATAGAATTTTGGTGCAGGACAATAAAACTCCATGCATGAAGACAGATATGAATATCACCTTGCTATTTGATATTGTGGAAGGTCACGGTGAAGTATCTGACTTTATAGCTGTGCGCCAAGTTTTTGCTTCTAGGCTCATTAATTTCTTTGCCATGCATCCTGAGGCTTGTGATGTTCCAGAGGCCATATTGCCGGAGCCTTTTAGCCAAAGAAGAGAGATACCTGTCCTGGAGAAATTACCTATCAATTCTTCAATGGAATTTAAAGCAACTTCAAATGAAACTAAGCTGTTTTTAGAAAAAGTTCATCCATATCCATATGTGAGCAGACACTTCTCTCGTAATGCTGTTGTTGCTGAAGCAGAAAAGGCCCAACTCTTAGCATCTCCAGTCCCCTTGCCATCTTCTGGCGGTATGAATAACCAAGGTATTAAGAATGAGCAGAAGAAAGAATTTCCAGTTCTGTCTTCCAAACCTGATAGTATAACTGAGCTAGATATCAAAAAGGGGCAGCAGAACAAACCATGTTCCAAGTTCAGTATTATCAACCACTCAGTGCAGCTGAACCACCCTCAACGCTCTAGTGCTTCCAGTGTATCAGAAAGCCCTCTTGTAAAGCTCACCTCATCTGCTGATAGTATCATGACAGAAACACCTACACCCTTGACACCAAGGAGATCAATGCCCAGTTGTGACGCCAAGCATGTGACCATGAACAGCCAATCAGCATCATGTCATAAGCCTGCAAAAAGAATTCTAGACTTCTCACACTTGGAAGGTGATAAAATTTCATTGGACTGCACTGCAGATGAGTCGGACTGCTACAAAGTTGTAAACAAAAACATCCCTAAAACTAAAGAAGGACTTTTTGAGGATGGAAATGTTACTTGTTCTCTGGCAACACTGGAGGTTGAGCAGATCCTTGGTTGCGGTAATGAGGATCTCGAGAAGAGCCAAAAAAGTGCATTGCTGTGCCAGCAGATGTCTGCTTGCCTGGCTGACTTGGTTACTATAATCCACAGTATATTCAAGTCTCTTAACTGGTCTCCGATCACAAAAGAGGAGCTTGTGCACAAGATAATTATGAATAACTTTGATGTTGTTGAAAGAAGAGAAGTTGAAGAACAGATTGATCTTCTTGAAAGGCATGTTCCAGATTGGATACACAGGAAGTCTTCTGGTGGCGATACTATGTACAACATCAAGAAAGTGCCAAACTTGAACTTAGTTCTATCCAAGCTTAAGGCGAACATGATAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

516

Amino Acids

58.25

Weight (kDa)

8.29

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21760 FvH4_5g18520 FvH4_5g18520
malus_domestica	MD10G1150800.v1.1 MD14G1246400.v1.1
prunus_persica	Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.8G198500_v2.0.a1
pyrus_communis	pycom05g17860
rosa_chinensis	RchiOBHm_Chr7g0176981
rosa_laevigata	RLG00000005566
rosa_multiflora	Rmu_sc0005310.1_g000033
rosa_roxburghii	Rroxscaffold_3G00276190
rosa_rugosa	Rorug06G0402800
rosa_samantha	Rh7AG002100 Rh7BG002500 Rh7CG001800 Rh7DG002400
rosa_wichuraiana	Rw7G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	2 cut(s)	696, 1215
AclWI	GGATC	2 cut(s)	1198, 1233
AcsI	RAATTY	7 cut(s)	30, 257, 291, 545, 737, 1038, 1071
AcuI	CTGAAG	2 cut(s)	291, 663
AcyI	GRCGYC	1 cut(s)	981
AdeI	CACNNNGTG	1 cut(s)	841
AfaI	GTAC	2 cut(s)	236, 1481
AfiI	CCNNNNNNNGG	1 cut(s)	692
AflII	CTTAAG	1 cut(s)	1526
AgsI	TTSAA	9 cut(s)	50, 188, 540, 561, 1315, 1391, 1406, 1427, 1507
AjnI	CCWGG	2 cut(s)	513, 1278
AluBI	AGCT	8 cut(s)	275, 395, 574, 778, 847, 904, 1351, 1525
AluI	AGCT	8 cut(s)	275, 395, 574, 778, 847, 904, 1351, 1525
Alw21I	GWGCWC	1 cut(s)	1359
Alw26I	GTCTC	3 cut(s)	9, 1323, 1335
Alw44I	GTGCAC	1 cut(s)	1355
AlwI	GGATC	2 cut(s)	1198, 1233
Ama87I	CYCGRG	2 cut(s)	12, 1229
AoxI	GGCC	2 cut(s)	468, 654
ApaLI	GTGCAC	1 cut(s)	1355
ApeKI	GCWGC	2 cut(s)	796, 844
ApoI	RAATTY	7 cut(s)	30, 257, 291, 545, 737, 1038, 1071
AseI	ATTAAT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	655
AsuHPI	GGTGA	5 cut(s)	168, 334, 386, 898, 1076
AvaI	CYCGRG	2 cut(s)	12, 1229
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	1359
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	3 cut(s)	332, 744, 1452
Bbv12I	GWGCWC	1 cut(s)	1359
BbvI	GCAGC	2 cut(s)	808, 856
BccI	CCATC	2 cut(s)	694, 1154
BcgI	CGANNNNNNTGC	2 cut(s)	1080, 1114
BciT130I	CCWGG	2 cut(s)	515, 1280
BciVI	GTATCC	1 cut(s)	1440
BcoDI	GTCTC	3 cut(s)	9, 1323, 1335
BfaI	CTAG	5 cut(s)	215, 417, 779, 867, 1043
BfmI	CTRYAG	1 cut(s)	1089
BfrI	CTTAAG	1 cut(s)	1526
BfuI	GTATCC	1 cut(s)	1440
BisI	GCNGC	2 cut(s)	797, 845
BlsI	GCNGC	2 cut(s)	798, 846
Bme1390I	CCNGG	2 cut(s)	515, 1280
BmeT110I	CYCGRG	2 cut(s)	12, 1229
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	2 cut(s)	515, 1280
BmrI	ACTGGG	1 cut(s)	966
BmsI	GCATC	4 cut(s)	250, 451, 677, 1022
BmuI	ACTGGG	1 cut(s)	966
BpiI	GAAGAC	3 cut(s)	332, 744, 1452
BpmI	CTGGAG	3 cut(s)	536, 657, 1211
BpuEI	CTTGAG	2 cut(s)	56, 169
BsaHI	GRCGYC	1 cut(s)	981
BsaI	GGTCTC	1 cut(s)	1335
BsaJI	CCNNGG	3 cut(s)	709, 956, 1207
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	6 cut(s)	674, 743, 876, 972, 1194, 1331
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	1250
BseBI	CCWGG	2 cut(s)	515, 1280
BseDI	CCNNGG	3 cut(s)	709, 956, 1207
BseGI	GGATG	4 cut(s)	442, 592, 1128, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	1 cut(s)	1250
BseMII	CTCAG	4 cut(s)	215, 438, 765, 852
BseNI	ACTGG	6 cut(s)	674, 743, 876, 972, 1194, 1331
BseRI	GAGGAG	1 cut(s)	1361
BseSI	GKGCMC	1 cut(s)	1359
BseXI	GCAGC	2 cut(s)	808, 856
BsgI	GTGCAG	3 cut(s)	320, 863, 1069
BshFI	GGCC	2 cut(s)	470, 656
BsiHKAI	GWGCWC	1 cut(s)	1359
BsiHKCI	CYCGRG	2 cut(s)	12, 1229
BsiSI	CCGG	2 cut(s)	62, 479
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	3 cut(s)	9, 1323, 1335
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	470, 656
Bso31I	GGTCTC	1 cut(s)	1335
BsoBI	CYCGRG	2 cut(s)	12, 1229
Bsp1286I	GDGCHC	1 cut(s)	1359
Bsp1407I	TGTACA	2 cut(s)	234, 1479
Bsp143I	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
BspACI	CCGC	2 cut(s)	696, 1215
BspANI	GGCC	2 cut(s)	470, 656
BspCNI	CTCAG	4 cut(s)	214, 439, 766, 851
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	1093
BspPI	GGATC	2 cut(s)	1198, 1233
BspQI	GCTCTTC	1 cut(s)	1229
BspTI	CTTAAG	1 cut(s)	1526
BspTNI	GGTCTC	1 cut(s)	1335
BsrDI	GCAATG	1 cut(s)	1250
BsrGI	TGTACA	2 cut(s)	234, 1479
BsrI	ACTGG	6 cut(s)	674, 743, 876, 972, 1194, 1331
BssECI	CCNNGG	3 cut(s)	709, 956, 1207
BssMI	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
BssNI	GRCGYC	1 cut(s)	981
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	3 cut(s)	709, 956, 1207
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	515, 1280
Bst4CI	ACNGT	2 cut(s)	374, 1307
Bst6I	CTCTTC	3 cut(s)	493, 1229, 1390
BstACI	GRCGYC	1 cut(s)	981
BstAFI	CTTAAG	1 cut(s)	1526
BstAUI	TGTACA	2 cut(s)	234, 1479
BstC8I	GCNNGC	3 cut(s)	1029, 1262, 1276
BstDEI	CTNAG	7 cut(s)	201, 447, 570, 664, 774, 838, 1510
BstEII	GGTNACC	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	442, 592, 1128, 1165
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	5 cut(s)	965, 1206, 1228, 1338, 1420
BstMAI	GTCTC	3 cut(s)	9, 1323, 1335
BstMBI	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 638, 653, 1261, 1280
BstNI	CCWGG	2 cut(s)	515, 1280
BstNSI	RCATGY	2 cut(s)	992, 1436
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	513, 1278
BstSFI	CTRYAG	1 cut(s)	1089
BstSLI	GKGCMC	1 cut(s)	1359
BstV1I	GCAGC	2 cut(s)	808, 856
BstV2I	GAAGAC	3 cut(s)	332, 744, 1452
BstX2I	RGATCY	2 cut(s)	1203, 1225
BstYI	RGATCY	2 cut(s)	1203, 1225
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	1440
BsuRI	GGCC	2 cut(s)	470, 656
BtsCI	GGATG	4 cut(s)	442, 592, 1128, 1165
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	4 cut(s)	846, 883, 1086, 1187
Cac8I	GCNNGC	3 cut(s)	1029, 1262, 1276
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	655
CseI	GACGC	1 cut(s)	989
Csp6I	GTAC	2 cut(s)	235, 1480
CviQI	GTAC	2 cut(s)	235, 1480
DdeI	CTNAG	7 cut(s)	201, 447, 570, 664, 774, 838, 1510
DpnI	GATC	5 cut(s)	964, 1205, 1227, 1337, 1419
DpnII	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
DraI	TTTAAA	2 cut(s)	84, 550
DraIII	CACNNNGTG	1 cut(s)	841
Eam1104I	CTCTTC	3 cut(s)	493, 1229, 1390
EarI	CTCTTC	3 cut(s)	493, 1229, 1390
Eco130I	CCWWGG	3 cut(s)	709, 956, 1207
Eco31I	GGTCTC	1 cut(s)	1335
Eco32I	GATATC	1 cut(s)	784
Eco57I	CTGAAG	2 cut(s)	291, 663
Eco81I	CCTNAGG	1 cut(s)	447
Eco88I	CYCGRG	2 cut(s)	12, 1229
Eco91I	GGTNACC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	174
EcoRI	GAATTC	2 cut(s)	30, 1038
EcoRII	CCWGG	2 cut(s)	513, 1278
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	3 cut(s)	709, 956, 1207
EcoT22I	ATGCAT	2 cut(s)	323, 444
ErhI	CCWWGG	3 cut(s)	709, 956, 1207
FalI	AAGNNNNNCTT	4 cut(s)	1134, 1166, 1335, 1367
FaqI	GGGAC	1 cut(s)	662
FauNDI	CATATG	2 cut(s)	135, 604
Fnu4HI	GCNGC	2 cut(s)	797, 845
FokI	GGATG	4 cut(s)	429, 579, 1115, 1172
Fsp4HI	GCNGC	2 cut(s)	797, 845
FspBI	CTAG	5 cut(s)	215, 417, 779, 867, 1043
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	797, 845
GsuI	CTGGAG	3 cut(s)	536, 657, 1211
HaeIII	GGCC	2 cut(s)	470, 656
HapII	CCGG	2 cut(s)	62, 479
HgaI	GACGC	1 cut(s)	989
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	981
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	1523
HinfI	GANTC	1 cut(s)	1097
HpaII	CCGG	2 cut(s)	62, 479
HphI	GGTGA	5 cut(s)	168, 334, 386, 898, 1076
Hpy166II	GTNNAC	2 cut(s)	1120, 1357
Hpy188I	TCNGA	5 cut(s)	57, 385, 886, 1102, 1335
Hpy8I	GTNNAC	2 cut(s)	1120, 1357
HpyAV	CCTTC	3 cut(s)	359, 1055, 1139
HpyCH4III	ACNGT	2 cut(s)	374, 1307
HpyCH4V	TGCA	9 cut(s)	301, 321, 442, 844, 1031, 1086, 1091, 1250, 1357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 638, 653, 1261, 1280
HpyF3I	CTNAG	7 cut(s)	201, 447, 570, 664, 774, 838, 1510
Hsp92I	GRCGYC	1 cut(s)	981
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
LguI	GCTCTTC	1 cut(s)	1229
LmnI	GCTCC	2 cut(s)	481, 1348
Lsp1109I	GCAGC	2 cut(s)	808, 856
LweI	GCATC	4 cut(s)	250, 451, 677, 1022
MaeI	CTAG	5 cut(s)	215, 417, 779, 867, 1043
MaeIII	GTNAC	6 cut(s)	174, 368, 977, 991, 1168, 1291
MalI	GATC	5 cut(s)	964, 1205, 1227, 1337, 1419
MboI	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
MflI	RGATCY	2 cut(s)	1203, 1225
MhlI	GDGCHC	1 cut(s)	1359
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	1 cut(s)	1080
Mph1103I	ATGCAT	2 cut(s)	323, 444
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	6 cut(s)	83, 426, 549, 717, 1323, 1527
MslI	CAYNNNNRTG	1 cut(s)	1255
MspA1I	CMGCKG	1 cut(s)	847
MspCI	CTTAAG	1 cut(s)	1526
MspI	CCGG	2 cut(s)	62, 479
MspR9I	CCNGG	2 cut(s)	515, 1280
MvaI	CCWGG	2 cut(s)	515, 1280
MwoI	GCNNNNNNNGC	5 cut(s)	163, 638, 653, 1261, 1280
NdeI	CATATG	2 cut(s)	135, 604
NdeII	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	4 cut(s)	174, 368, 977, 991
NsiI	ATGCAT	2 cut(s)	323, 444
NspI	RCATGY	2 cut(s)	992, 1436
PaeR7I	CTCGAG	2 cut(s)	12, 1229
PagI	TCATGA	1 cut(s)	927
PciSI	GCTCTTC	1 cut(s)	1229
PdmI	GAANNNNTTC	1 cut(s)	588
PflMI	CCANNNNNTGG	1 cut(s)	692
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	798, 846
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
PshBI	ATTAAT	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	513, 1278
PspEI	GGTNACC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	513, 1278
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	655
PspXI	VCTCGAGB	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	1093
PsuI	RGATCY	2 cut(s)	1203, 1225
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	2 cut(s)	236, 1481
RsaNI	GTAC	2 cut(s)	235, 1480
RseI	CAYNNNNRTG	1 cut(s)	1255
SapI	GCTCTTC	1 cut(s)	1229
SaqAI	TTAA	6 cut(s)	83, 426, 549, 717, 1323, 1527
SatI	GCNGC	2 cut(s)	797, 845
Sau3AI	GATC	5 cut(s)	962, 1203, 1225, 1335, 1417
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	2 cut(s)	515, 1280
SduI	GDGCHC	1 cut(s)	1359
SfaNI	GCATC	4 cut(s)	250, 451, 677, 1022
SfcI	CTRYAG	1 cut(s)	1089
Sfr274I	CTCGAG	2 cut(s)	12, 1229
SlaI	CTCGAG	2 cut(s)	12, 1229
SmiMI	CAYNNNNRTG	1 cut(s)	1255
SmlI	CTYRAG	5 cut(s)	12, 35, 148, 1229, 1526
SmoI	CTYRAG	5 cut(s)	12, 35, 148, 1229, 1526
SsiI	CCGC	2 cut(s)	696, 1215
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	5 cut(s)	215, 417, 779, 867, 1043
StyD4I	CCNGG	2 cut(s)	513, 1278
StyI	CCWWGG	3 cut(s)	709, 956, 1207
TaaI	ACNGT	2 cut(s)	374, 1307
TaqI	TCGA	2 cut(s)	13, 1230
TatI	WGTACW	2 cut(s)	234, 1479
Tru1I	TTAA	6 cut(s)	83, 426, 549, 717, 1323, 1527
Tru9I	TTAA	6 cut(s)	83, 426, 549, 717, 1323, 1527
TscAI	CASTG	4 cut(s)	846, 883, 1093, 1194
TseFI	GTSAC	4 cut(s)	174, 368, 977, 991
TseI	GCWGC	2 cut(s)	796, 844
Tsp45I	GTSAC	4 cut(s)	174, 368, 977, 991
TspRI	CASTG	4 cut(s)	846, 883, 1093, 1194
Van91I	CCANNNNNTGG	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	1526
VneI	GTGCAC	1 cut(s)	1355
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	7 cut(s)	30, 257, 291, 545, 737, 1038, 1071
XbaI	TCTAGA	1 cut(s)	1042
XceI	RCATGY	2 cut(s)	992, 1436
XhoI	CTCGAG	2 cut(s)	12, 1229
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	5 cut(s)	215, 417, 779, 867, 1043
Zsp2I	ATGCAT	2 cut(s)	323, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.