Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011523

Physical Location & Seq

Genomic Coordinates Reverse (-)

67450791 .. 67456408

Gene Structure 5618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00276190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGGATTTCAAGATTGCTACTGGAGTTGAGAAATCAGCTTGTCCGTCTCCTGCTCCCGTGAAAATCCCAGCAGTTGGATGTGAATGTCCGACGCCAGAGAGGATAAGCGACCCTTTGCCCACCAATTTACAGCAGGGACAGCTCCAACTTCCGGACAACTGTGCAGCAGATTTCCTTGATCATATGAATTGCTCGTTAAGGTTGCTTCGTCTGCGTAAAAAGTCAACTACGTTCCGGAATATATCTACTCAGGTGGAAATCCTGGCAAAAAGAAAGTTCTTATACAGGCATCTTGCTCAGATAAAATTTATACTTCCTGAAGCCATAAAGATAGATTGGGTTTTGGTGTCCGACAAGGAAACTCAATTCATGAAGCCGGATATAAACATCAGCTTGCTATTTGATATTGTAAAAGGTCACCGTGAGATATCTGATTTTACAGCTTTGCGCCAAGTTTTTGCTTCTAGGCTTATGAGTTTCTTTGCAATGCATCCTGAGTTAGGTGGCATTTCATATTGGATGATAAAACAAATGAACTCACTTGTTTGCATTTCTGGGGTCAAGGCTTCTGATGTTCCGGAGGCCATATTGCCAGAGCCTTTTAGCAAAAGAAGTCAGATACCTGTCCTGAAGCAATTGTCTACAGATTCTTCGACAGAACCTAAACCAATTTCAATTGAAACTGAGCTGTTGTCAGAAAAAGTCTGTCCATATCCATATATCAGTAGACACTTTTCGCGGAATAATGTTATTGCTAAAACAGACAAAACCCAAGTCTTATCATCTCCACTACCTCTGCCATCGGCTGATGGTATGAATAAACAAAGTATTAAAAGTGGGCTGCAGAAAGAGTTTCTTGTTGTGTCTTACGATCCTGAGCAAGACATCAAAAATTGGCAGCGGAAAGAATCATGCTCCAAATCCAGTAGTATTGACCACTCAATACATCTGAATCACCCTCAGCCTTCTATTGGTTCCAGCATACCTGATAGCCCTCTTGTGAAGTTCACCTCATCTGCCAATAGTTTGATGATAGAAACACCTCAACCATTGACACCAAGGAGATCGATGCCCAGTTGTGATGCCAAGCATGAGACCTTGAACACCCAAAAATCAACATCTTGTTATAAGCCTGCAAAAAGAGTTCTAGACTTCTCTGACCTAGAAGGTGATAAAAGTGCATTGGACTACACTGCAGATGAGTCAGGATGCTACAATATTGTACACCAAGACATCCCTAAAGCTACAGGAAAAATTGTCGGAGATGGATACCTCACTTGTTCTCCAGCAAGGCAAGAGGTAGAACGGGTCCTTGGTTGCTCTAATGAGGATTGCATGAAGACTCAAACAAGCTCATTAATGCGCCTGCAGATGTCTACTCGCCTAGCTGACATGGTTACTCTAATTTATGGTGTATTGAAGTCTTTTAACTGGTCTCCTATCACCAAAGAGGAGCTTGTGCACAAGATAATTATGAATAGTCTTGATATTATTGAAAGAAAAGAAGTTGAAGAACAGTTTGGGCTTCTTGAAAGGCATGTTCCAGATTGGATCCAGACCAAGTTGCTTTCTAGTGGGGATATTATGTACACGTTAGGAATCAGAGTATATGCTTTGGTTTGTATTAGGGCTGTCACTCGGTCGGTTCGAATCGGTTATAGCGTCAAGAAAGTGCCAAATTTGGACTCGGTTCTATCAAAGCTCAAGCATTTGACTGTTTCGCACCAAAAGGTGGAAGCATCCGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

583

Amino Acids

65.33

Weight (kDa)

8.56

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	67 - 114	4.5e-07	DNA replication factor CDT1 like
CDT1_C	PF16679	446 - 521	7.4e-09	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21760 FvH4_5g18520 FvH4_5g18520
malus_domestica	MD10G1150800.v1.1 MD14G1246400.v1.1
prunus_persica	Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.8G198500_v2.0.a1
pyrus_communis	pycom05g17860
rosa_chinensis	RchiOBHm_Chr7g0176981
rosa_laevigata	RLG00000005566
rosa_multiflora	Rmu_sc0005310.1_g000033
rosa_roxburghii	Rroxscaffold_3G00276190
rosa_rugosa	Rorug06G0402800
rosa_samantha	Rh7AG002100 Rh7BG002500 Rh7CG001800 Rh7DG002400
rosa_wichuraiana	Rw7G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1128
AccB7I	CCANNNNNTGG	2 cut(s)	74, 1732
AccI	GTMKAC	3 cut(s)	641, 727, 1376
AccII	CGCG	1 cut(s)	739
AccIII	TCCGGA	3 cut(s)	151, 234, 577
AciI	CCGC	2 cut(s)	739, 901
AclWI	GGATC	3 cut(s)	866, 1546, 1559
AcsI	RAATTY	2 cut(s)	305, 1678
AcuI	CTGAAG	2 cut(s)	339, 650
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	1224, 1589
AfiI	CCNNNNNNNGG	5 cut(s)	74, 151, 500, 971, 1732
AflIII	ACRYGT	1 cut(s)	1590
AgsI	TTSAA	8 cut(s)	10, 675, 680, 1102, 1420, 1496, 1511, 1532
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	4 cut(s)	1296, 1328, 1503, 1535
Alw21I	GWGCWC	1 cut(s)	1464
Alw26I	GTCTC	3 cut(s)	51, 1088, 1440
Alw44I	GTGCAC	1 cut(s)	1460
AlwI	GGATC	3 cut(s)	866, 1546, 1559
Aor13HI	TCCGGA	3 cut(s)	151, 234, 577
AoxI	GGCC	1 cut(s)	582
ApaLI	GTGCAC	1 cut(s)	1460
ApeKI	GCWGC	3 cut(s)	164, 841, 898
ApoI	RAATTY	2 cut(s)	305, 1678
ArsI	GACNNNNNNTTYG	2 cut(s)	759, 791
AseI	ATTAAT	1 cut(s)	1358
AspLEI	GCGC	2 cut(s)	450, 1365
AspS9I	GGNCC	1 cut(s)	1309
AsuHPI	GGTGA	5 cut(s)	410, 947, 1000, 1181, 1435
AsuII	TTCGAA	1 cut(s)	1648
AvaII	GGWCC	1 cut(s)	1309
BaeGI	GKGCMC	1 cut(s)	1464
BamHI	GGATCC	1 cut(s)	1551
BbsI	GAAGAC	1 cut(s)	1346
Bbv12I	GWGCWC	1 cut(s)	1464
BbvCI	CCTCAGC	1 cut(s)	960
BbvI	GCAGC	3 cut(s)	176, 828, 910
BccI	CCATC	3 cut(s)	803, 808, 1259
BciT130I	CCWGG	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	1262
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	51, 1088, 1440
BfaI	CTAG	5 cut(s)	465, 1148, 1163, 1385, 1572
BfmI	CTRYAG	5 cut(s)	642, 842, 1194, 1245, 1367
BfuI	GTATCC	1 cut(s)	1262
BisI	GCNGC	3 cut(s)	165, 842, 899
BlsI	GCNGC	3 cut(s)	166, 843, 900
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	1309
BmgT120I	GGNCC	1 cut(s)	1309
BmiI	GGNNCC	3 cut(s)	976, 1310, 1553
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	1068
BmsI	GCATC	6 cut(s)	298, 499, 1059, 1072, 1199, 1748
BmuI	ACTGGG	1 cut(s)	1068
BpiI	GAAGAC	1 cut(s)	1346
BpmI	CTGGAG	2 cut(s)	42, 1269
Bpu10I	CCTNAGC	2 cut(s)	876, 960
Bpu14I	TTCGAA	1 cut(s)	1648
BpuEI	CTTGAG	1 cut(s)	1688
Bsa29I	ATCGAT	1 cut(s)	1067
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	2 cut(s)	1088, 1440
BsaJI	CCNNGG	3 cut(s)	1058, 1312, 1743
BsaWI	WCCGGW	3 cut(s)	151, 234, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	1267, 1297
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 151, 500, 971, 1732
Bse1I	ACTGG	4 cut(s)	25, 924, 1074, 1436
Bse3DI	GCAATG	1 cut(s)	492
BseAI	TCCGGA	3 cut(s)	151, 234, 577
BseBI	CCWGG	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	1067
BseDI	CCNNGG	3 cut(s)	1058, 1312, 1743
BseGI	GGATG	6 cut(s)	83, 490, 525, 1214, 1233, 1739
BseLI	CCNNNNNNNGG	5 cut(s)	74, 151, 500, 971, 1732
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	6 cut(s)	263, 311, 486, 675, 867, 974
BseNI	ACTGG	4 cut(s)	25, 924, 1074, 1436
BseRI	GAGGAG	1 cut(s)	1466
BseSI	GKGCMC	1 cut(s)	1464
BseXI	GCAGC	3 cut(s)	176, 828, 910
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	739
Bsh1285I	CGRYCG	1 cut(s)	1643
BshFI	GGCC	1 cut(s)	584
BshVI	ATCGAT	1 cut(s)	1067
BsiEI	CGRYCG	1 cut(s)	1643
BsiHKAI	GWGCWC	1 cut(s)	1464
BsiSI	CCGG	4 cut(s)	152, 235, 377, 578
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	5 cut(s)	74, 151, 500, 971, 1732
BsmAI	GTCTC	3 cut(s)	51, 1088, 1440
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	584
Bso31I	GGTCTC	2 cut(s)	1088, 1440
Bsp119I	TTCGAA	1 cut(s)	1648
Bsp1286I	GDGCHC	1 cut(s)	1464
Bsp13I	TCCGGA	3 cut(s)	151, 234, 577
Bsp1407I	TGTACA	2 cut(s)	1222, 1587
Bsp143I	GATC	4 cut(s)	178, 871, 1064, 1551
BspACI	CCGC	2 cut(s)	739, 901
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	6 cut(s)	262, 310, 487, 676, 868, 973
BspDI	ATCGAT	1 cut(s)	1067
BspEI	TCCGGA	3 cut(s)	151, 234, 577
BspFNI	CGCG	1 cut(s)	739
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	976, 1310, 1553
BspMAI	CTGCAG	3 cut(s)	846, 1198, 1371
BspPI	GGATC	3 cut(s)	866, 1546, 1559
BspT104I	TTCGAA	1 cut(s)	1648
BspTNI	GGTCTC	2 cut(s)	1088, 1440
BsrDI	GCAATG	1 cut(s)	492
BsrGI	TGTACA	2 cut(s)	1222, 1587
BsrI	ACTGG	4 cut(s)	25, 924, 1074, 1436
BssECI	CCNNGG	3 cut(s)	1058, 1312, 1743
BssMI	GATC	4 cut(s)	178, 871, 1064, 1551
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	1058, 1312
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	4 cut(s)	161, 422, 1518, 1717
BstACI	GRCGYC	1 cut(s)	92
BstAUI	TGTACA	2 cut(s)	1222, 1587
BstBI	TTCGAA	1 cut(s)	1648
BstC8I	GCNNGC	3 cut(s)	395, 1134, 1367
BstDEI	CTNAG	6 cut(s)	249, 297, 495, 684, 876, 960
BstEII	GGTNACC	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	6 cut(s)	83, 490, 525, 1214, 1233, 1739
BstFNI	CGCG	1 cut(s)	739
BstHHI	GCGC	2 cut(s)	450, 1365
BstKTI	GATC	4 cut(s)	181, 874, 1067, 1554
BstMAI	GTCTC	3 cut(s)	51, 1088, 1440
BstMBI	GATC	4 cut(s)	178, 871, 1064, 1551
BstMCI	CGRYCG	1 cut(s)	1643
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 211
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	1541
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	5 cut(s)	642, 842, 1194, 1245, 1367
BstSLI	GKGCMC	1 cut(s)	1464
BstUI	CGCG	1 cut(s)	739
BstV1I	GCAGC	3 cut(s)	176, 828, 910
BstV2I	GAAGAC	1 cut(s)	1346
BstX2I	RGATCY	1 cut(s)	1551
BstYI	RGATCY	1 cut(s)	1551
Bsu15I	ATCGAT	1 cut(s)	1067
BsuI	GTATCC	1 cut(s)	1262
BsuRI	GGCC	1 cut(s)	584
BsuTUI	ATCGAT	1 cut(s)	1067
BtsCI	GGATG	6 cut(s)	83, 490, 525, 1214, 1233, 1739
BtsI	GCAGTG	1 cut(s)	1191
BtsIMutI	CAGTG	1 cut(s)	1191
Cac8I	GCNNGC	3 cut(s)	395, 1134, 1367
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	2 cut(s)	450, 1365
Cfr13I	GGNCC	1 cut(s)	1309
ClaI	ATCGAT	1 cut(s)	1067
CseI	GACGC	2 cut(s)	100, 1651
Csp6I	GTAC	2 cut(s)	1223, 1588
CviAII	CATG	6 cut(s)	370, 912, 1091, 1336, 1393, 1538
CviQI	GTAC	2 cut(s)	1223, 1588
DdeI	CTNAG	6 cut(s)	249, 297, 495, 684, 876, 960
DpnI	GATC	4 cut(s)	180, 873, 1066, 1553
DpnII	GATC	4 cut(s)	178, 871, 1064, 1551
Eco130I	CCWWGG	2 cut(s)	1058, 1312
Eco31I	GGTCTC	2 cut(s)	1088, 1440
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	1309
Eco57I	CTGAAG	2 cut(s)	339, 650
Eco91I	GGTNACC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	1309
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	1058, 1312
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	1058, 1312
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	6 cut(s)	373, 915, 1094, 1339, 1396, 1541
FalI	AAGNNNNNCTT	6 cut(s)	97, 129, 840, 872, 1440, 1472
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	6 cut(s)	369, 911, 1090, 1335, 1392, 1537
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	3 cut(s)	641, 727, 1376
Fnu4HI	GCNGC	3 cut(s)	165, 842, 899
FokI	GGATG	6 cut(s)	90, 477, 532, 1220, 1221, 1726
Fsp4HI	GCNGC	3 cut(s)	165, 842, 899
FspBI	CTAG	5 cut(s)	465, 1148, 1163, 1385, 1572
GlaI	GCGC	2 cut(s)	449, 1364
GluI	GCNGC	3 cut(s)	165, 842, 899
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	2 cut(s)	42, 1269
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	4 cut(s)	152, 235, 377, 578
HgaI	GACGC	2 cut(s)	100, 1651
HhaI	GCGC	2 cut(s)	450, 1365
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	373, 915, 1094, 1339, 1396, 1541
Hin6I	GCGC	2 cut(s)	448, 1363
HinP1I	GCGC	2 cut(s)	448, 1363
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	8 cut(s)	647, 908, 952, 1202, 1342, 1599, 1650, 1685
HpaII	CCGG	4 cut(s)	152, 235, 377, 578
HphI	GGTGA	5 cut(s)	410, 947, 1000, 1181, 1435
Hpy166II	GTNNAC	8 cut(s)	225, 642, 728, 1008, 1225, 1377, 1462, 1590
Hpy8I	GTNNAC	8 cut(s)	225, 642, 728, 1008, 1225, 1377, 1462, 1590
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	975, 1160
HpyCH4III	ACNGT	4 cut(s)	161, 422, 1518, 1717
HpyCH4IV	ACGT	2 cut(s)	230, 1592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 211
HpyF3I	CTNAG	6 cut(s)	249, 297, 495, 684, 876, 960
HpySE526I	ACGT	2 cut(s)	230, 1592
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	6 cut(s)	373, 915, 1094, 1339, 1396, 1541
HspAI	GCGC	2 cut(s)	448, 1363
Kpn2I	TCCGGA	3 cut(s)	151, 234, 577
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	178, 871, 1064, 1551
LmnI	GCTCC	4 cut(s)	58, 147, 920, 1453
Lsp1109I	GCAGC	3 cut(s)	176, 828, 910
LweI	GCATC	6 cut(s)	298, 499, 1059, 1072, 1199, 1748
MaeI	CTAG	5 cut(s)	465, 1148, 1163, 1385, 1572
MaeII	ACGT	2 cut(s)	230, 1592
MaeIII	GTNAC	3 cut(s)	416, 1396, 1633
MalI	GATC	4 cut(s)	180, 873, 1066, 1553
MboI	GATC	4 cut(s)	178, 871, 1064, 1551
MboII	GAAGA	3 cut(s)	642, 1351, 1523
MfeI	CAATTG	2 cut(s)	635, 675
MflI	RGATCY	1 cut(s)	1551
MhlI	GDGCHC	1 cut(s)	1464
MlyI	GAGTC	3 cut(s)	1211, 1336, 1679
MmeI	TCCRAC	5 cut(s)	55, 113, 169, 375, 1240
Mph1103I	ATGCAT	1 cut(s)	492
MroI	TCCGGA	3 cut(s)	151, 234, 577
MseI	TTAA	4 cut(s)	197, 831, 1358, 1428
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	4 cut(s)	152, 235, 377, 578
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	2 cut(s)	635, 675
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	739
MwoI	GCNNNNNNNGC	2 cut(s)	139, 211
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	4 cut(s)	178, 871, 1064, 1551
NlaIII	CATG	6 cut(s)	373, 915, 1094, 1339, 1396, 1541
NlaIV	GGNNCC	3 cut(s)	976, 1310, 1553
NmuCI	GTSAC	2 cut(s)	416, 1633
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	1541
NspV	TTCGAA	1 cut(s)	1648
PagI	TCATGA	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	2 cut(s)	1645, 1659
PfeI	GAWTC	5 cut(s)	647, 908, 952, 1599, 1650
PflMI	CCANNNNNTGG	2 cut(s)	74, 1732
PkrI	GCNGC	3 cut(s)	166, 843, 900
PleI	GAGTC	3 cut(s)	1210, 1336, 1679
PpsI	GAGTC	3 cut(s)	1210, 1336, 1679
PpuMI	RGGWCCY	1 cut(s)	1309
PshBI	ATTAAT	1 cut(s)	1358
PsiI	TTATAA	1 cut(s)	1128
Psp5II	RGGWCCY	1 cut(s)	1309
Psp6I	CCWGG	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	976, 1310, 1553
PspPI	GGNCC	1 cut(s)	1309
PspPPI	RGGWCCY	1 cut(s)	1309
PstI	CTGCAG	3 cut(s)	846, 1198, 1371
PsuI	RGATCY	1 cut(s)	1551
RsaI	GTAC	2 cut(s)	1224, 1589
RsaNI	GTAC	2 cut(s)	1223, 1588
SaqAI	TTAA	4 cut(s)	197, 831, 1358, 1428
SatI	GCNGC	3 cut(s)	165, 842, 899
Sau3AI	GATC	4 cut(s)	178, 871, 1064, 1551
Sau96I	GGNCC	1 cut(s)	1309
SchI	GAGTC	3 cut(s)	1211, 1336, 1679
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	1464
SfaNI	GCATC	6 cut(s)	298, 499, 1059, 1072, 1199, 1748
SfcI	CTRYAG	5 cut(s)	642, 842, 1194, 1245, 1367
SfuI	TTCGAA	1 cut(s)	1648
SinI	GGWCC	1 cut(s)	1309
SmlI	CTYRAG	1 cut(s)	1703
SmoI	CTYRAG	1 cut(s)	1703
SsiI	CCGC	2 cut(s)	739, 901
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	5 cut(s)	465, 1148, 1163, 1385, 1572
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	1058, 1312
TaaI	ACNGT	4 cut(s)	161, 422, 1518, 1717
TaiI	ACGT	2 cut(s)	233, 1595
TaqI	TCGA	3 cut(s)	653, 1067, 1648
TaqII	GACCGA	1 cut(s)	1629
TatI	WGTACW	2 cut(s)	1222, 1587
TfiI	GAWTC	5 cut(s)	647, 908, 952, 1599, 1650
Tru1I	TTAA	4 cut(s)	197, 831, 1358, 1428
Tru9I	TTAA	4 cut(s)	197, 831, 1358, 1428
TscAI	CASTG	1 cut(s)	1198
TseFI	GTSAC	2 cut(s)	416, 1633
TseI	GCWGC	3 cut(s)	164, 841, 898
Tsp45I	GTSAC	2 cut(s)	416, 1633
TspDTI	ATGAA	8 cut(s)	200, 358, 386, 501, 548, 830, 1352, 1490
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	1198
Van91I	CCANNNNNTGG	2 cut(s)	74, 1732
VneI	GTGCAC	1 cut(s)	1460
VpaK11BI	GGWCC	1 cut(s)	1309
VspI	ATTAAT	1 cut(s)	1358
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	2 cut(s)	305, 1678
XbaI	TCTAGA	1 cut(s)	1147
XceI	RCATGY	1 cut(s)	1541
XmiI	GTMKAC	3 cut(s)	641, 727, 1376
XspI	CTAG	5 cut(s)	465, 1148, 1163, 1385, 1572
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.