MD14G1246400.v1.1

DNA replication factor CDT1 like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
32400615 .. 32404978
4364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1246400.v1.1.491

Sequence Viewer

Length: 237 bp
ATGAACTCATGCATTTTTATTTTTGAGATCAAGGCTTGTGATGTTCTAGATGCCATTTTGGTAGAGCCTTTTAGCCAAAGACAGCGTGTTGTTGTTGCTCAAACAGAAAAGACCCAACTCTTAGCATCTCCATCCCCCACACCATCTGATGGTGTTAGGAACAACAAAAATGGGCAGAATAAAGTATTTACTATTCAATCTTCCAATTTTAAGAGTAAATCGGAGCTAGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.67

Weight (kDa)

7.77

Isoelectric Point (pI)

64.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
BccI CCATC 3 cut(s) 139, 143, 151
BfaI CTAG 2 cut(s) 47, 227
BmsI GCATC 2 cut(s) 40, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 149
Bsp143I GATC 1 cut(s) 27
BssMI GATC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 131
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 131
CviAII CATG 1 cut(s) 9
CviJI RGCY 4 cut(s) 35, 67, 75, 226
CviKI_1 RGCY 4 cut(s) 35, 67, 75, 226
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 232
EcoRV GATATC 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 1 cut(s) 12
FaiI YATR 1 cut(s) 10
FatI CATG 1 cut(s) 8
FokI GGATG 1 cut(s) 118
FspBI CTAG 2 cut(s) 47, 227
Hin1II CATG 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 148, 223
Hpy188III TCNNGA 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 1 cut(s) 12
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 223
LweI GCATC 2 cut(s) 40, 134
MaeI CTAG 2 cut(s) 47, 227
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 192
MluCI AATT 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 14
MseI TTAA 1 cut(s) 210
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 27
SetI ASST 1 cut(s) 228
SfaNI GCATC 2 cut(s) 40, 134
SgeI CNNG 5 cut(s) 21, 43, 48, 59, 98
Sse9I AATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 47, 227
TasI AATT 1 cut(s) 205
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 149
XbaI TCTAGA 1 cut(s) 46
XspI CTAG 2 cut(s) 47, 227
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.