Rh7BG002500

DNA replication factor CDT1 like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
178368 .. 185773
7406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG002500.1

Sequence Viewer

Length: 1695 bp
ATGGATTTCAAGATTGCTACTGGAGTTGAGAAATCAGCTTGTCCGTCTCCTGCTCCGGTGAAAATCCCAGCAGTTGAATGTGAATGTCCGACGCCAGAGAAGATAAGCGACCCTTTGCCCACCAATTTACAGCTCCAACTTCCGGACAAGGGTGCAGCAGATTTCCTTGATCATATGAATTGTTCGTTAAGGTTGCTTCGTCTGCGTAAAAAGGCAACTACGTTCCGGAATATATCTACTCAGGTGGAAATCCTGGCAAAAAGAAAGTTCTTATACAGGCATCTTGCTCAGATAAAATTTATACTTCCTGAAGCCATAAAGATAGATTGGGTTTTGGTGTCTGACAACGAAACTCAATTCATGAAGCCGGATATAAACATCAGCTTGCTATTTGATATTGTAAAAGGTCACCGTGAGATATCTGATTTTACAGCTTTGCGCCAAGTTTTTGCTTCTAGGCTTATGAGTTTCTTTGCAATGCATCCTGAGGCTTCTGATGTTCCGGAGGCCATATTGCCAGAGCCTTTTAGCAAAAGAAGTCAGATACCTGTCCTGAAGCAATTGTCTACAGATTTTTCGATGGAACCTAAACCAACTTCAATTGAAACTGAGCTGTTGTCAGAAAAAGTCTGTCCATATCCATATATCAGTAGACATTTTTCGCGGAATAATGTTATTGCTAAAACAGAAAAAACCCAAGTCTTATCATCTCCACTACCTCTGCCATCGGCTGATGGTATGAATAACCAAAGTATTAAAAGTGGGCTGCAGAAAGAGTTTCTTGTTGTGTCTTACGATCCTGAGCAAGACATCAAAAATTGGCAGCGGAAAGAATCATGCTCCAAATCCAGTATTATTGACCACTCAATACATCTGAATCACCCTCAGCCTTCTATTGGTTCCAGCATACCTGATAGCCCTCTTGTGAAGCTCACCTCATCCGCCAATAGTTTGATGATAGAAACACCTCAACCATTGACACCAAGGAGATCGATGCCCAGTTGTGATCCCAAGCATGAGACCTTGAACACCCAAAAATCAACATCTTGTTATAAGCCTGCAAAAAGAGTTCTAGACTTCTCTGACCTAGAAGGTGATAAAAGTGCATTGGACTACACTGCAGATGAGTCAGGATGCTACAATATTGTACACCAAGACATCCCTAAAGCTATAGGAAAAACTGTCGGAGATAGATACCTCACTTGTTCTCCAGCAAGGCAAGAGGTAGAACGGGTCCTTGGTTGCTCTAATGAGGATTGCAAGAAGACTCAAACAAGCTCATTGATGCGCCTGCAGATGTCTACTCGCCTAGCTGACATAGTTACTCTAATTTATGGTGTATTGAAGTCTTTTAACTGGTCTCCTATCACCAAAGAGGAGCTTGTGCACAAGATAATTATGAATAGTCTTGATATTACTGAAAGAAAAGAAGTTGAAGAACAGTTTGGGCTTCTTGAAAGGCATGTTCCAGATTGGATCCAGAGCAAGTTGCTTTCTAGTGGGGATATTATGTACACCGTCAAGAAAGTGCCAAATTTGGACTCAGTTCTATCAAAGCTCAAGCATCTGACTGTTTCAGACCAAAAGTCAAGCTATATACTTGAAGAAGATACGTTGGTCCTGGTGTTGATGTGGTTCATCTTTTACAATAGCTCGCGGTATTTAACAGAATTTTGCAAGAGGCATCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

564

Amino Acids

63.98

Weight (kDa)

7.54

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDT1 PF08839 64 - 113 4.7e-07 DNA replication factor CDT1 like
CDT1_C PF16679 424 - 496 1.5e-08 DNA replication factor Cdt1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1053
AccI GTMKAC 3 cut(s) 566, 652, 1301
AccII CGCG 2 cut(s) 664, 1657
AccIII TCCGGA 3 cut(s) 142, 225, 502
AciI CCGC 4 cut(s) 664, 826, 942, 1657
AclWI GGATC 4 cut(s) 791, 1001, 1471, 1484
AcsI RAATTY 3 cut(s) 296, 1534, 1670
AcuI CTGAAG 2 cut(s) 330, 575
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 1149, 1514
AfiI CCNNNNNNNGG 3 cut(s) 142, 149, 896
AgsI TTSAA 9 cut(s) 10, 77, 600, 605, 1027, 1345, 1436, 1457, 1604
AhdI GACNNNNNGTC 1 cut(s) 1585
AjnI CCWGG 2 cut(s) 252, 1620
AjuI GAANNNNNNNTTGG 4 cut(s) 1221, 1253, 1428, 1460
Alw21I GWGCWC 1 cut(s) 1389
Alw26I GTCTC 3 cut(s) 51, 1013, 1365
Alw44I GTGCAC 1 cut(s) 1385
AlwI GGATC 4 cut(s) 791, 1001, 1471, 1484
Aor13HI TCCGGA 3 cut(s) 142, 225, 502
AoxI GGCC 1 cut(s) 507
ApaLI GTGCAC 1 cut(s) 1385
ApeKI GCWGC 3 cut(s) 155, 766, 823
ApoI RAATTY 3 cut(s) 296, 1534, 1670
AspLEI GCGC 2 cut(s) 441, 1290
AspS9I GGNCC 2 cut(s) 1234, 1618
AsuHPI GGTGA 6 cut(s) 70, 401, 872, 925, 1106, 1360
AvaII GGWCC 2 cut(s) 1234, 1618
AxyI CCTNAGG 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 1389
BaeI ACNNNNGTAYC 2 cut(s) 1602, 1635
BamHI GGATCC 1 cut(s) 1476
BbsI GAAGAC 1 cut(s) 1271
Bbv12I GWGCWC 1 cut(s) 1389
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 3 cut(s) 167, 753, 835
BccI CCATC 3 cut(s) 574, 728, 733
BciT130I CCWGG 2 cut(s) 254, 1622
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 51, 1013, 1365
BfaI CTAG 5 cut(s) 456, 1073, 1088, 1310, 1497
BfmI CTRYAG 5 cut(s) 567, 767, 1119, 1170, 1292
BisI GCNGC 3 cut(s) 156, 767, 824
BlsI GCNGC 3 cut(s) 157, 768, 825
Bme1390I CCNGG 2 cut(s) 254, 1622
Bme18I GGWCC 2 cut(s) 1234, 1618
BmeRI GACNNNNNGTC 1 cut(s) 1585
BmgT120I GGNCC 2 cut(s) 1234, 1618
BmiI GGNNCC 4 cut(s) 585, 901, 1235, 1478
BmrFI CCNGG 2 cut(s) 254, 1622
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 6 cut(s) 289, 490, 984, 1124, 1275, 1573
BmuI ACTGGG 1 cut(s) 993
BpiI GAAGAC 1 cut(s) 1271
BpmI CTGGAG 2 cut(s) 42, 1194
Bpu10I CCTNAGC 2 cut(s) 801, 885
BpuEI CTTGAG 1 cut(s) 1544
Bsa29I ATCGAT 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 2 cut(s) 1013, 1365
BsaJI CCNNGG 2 cut(s) 983, 1237
BsaWI WCCGGW 4 cut(s) 55, 142, 225, 502
BsaXI ACNNNNNCTCC 2 cut(s) 1192, 1222
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 149, 896
Bse1I ACTGG 4 cut(s) 25, 849, 999, 1361
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 483
BseAI TCCGGA 3 cut(s) 142, 225, 502
BseBI CCWGG 2 cut(s) 254, 1622
BseCI ATCGAT 1 cut(s) 992
BseDI CCNNGG 2 cut(s) 983, 1237
BseGI GGATG 4 cut(s) 481, 938, 1139, 1158
BseLI CCNNNNNNNGG 3 cut(s) 142, 149, 896
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 7 cut(s) 254, 302, 477, 600, 792, 899, 1557
BseNI ACTGG 4 cut(s) 25, 849, 999, 1361
BseRI GAGGAG 1 cut(s) 1391
BseSI GKGCMC 1 cut(s) 1389
BseXI GCAGC 3 cut(s) 167, 753, 835
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 664, 1657
BshFI GGCC 1 cut(s) 509
BshVI ATCGAT 1 cut(s) 992
BsiHKAI GWGCWC 1 cut(s) 1389
BsiSI CCGG 5 cut(s) 56, 143, 226, 368, 503
BslI CCNNNNNNNGG 3 cut(s) 142, 149, 896
BsmAI GTCTC 3 cut(s) 51, 1013, 1365
BsmBI CGTCTC 1 cut(s) 51
BsnI GGCC 1 cut(s) 509
Bso31I GGTCTC 2 cut(s) 1013, 1365
Bsp1286I GDGCHC 1 cut(s) 1389
Bsp13I TCCGGA 3 cut(s) 142, 225, 502
Bsp1407I TGTACA 2 cut(s) 1147, 1512
Bsp143I GATC 5 cut(s) 169, 796, 989, 1006, 1476
BspACI CCGC 4 cut(s) 664, 826, 942, 1657
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 7 cut(s) 253, 301, 478, 601, 793, 898, 1556
BspDI ATCGAT 1 cut(s) 992
BspEI TCCGGA 3 cut(s) 142, 225, 502
BspFNI CGCG 2 cut(s) 664, 1657
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 4 cut(s) 585, 901, 1235, 1478
BspMAI CTGCAG 3 cut(s) 771, 1123, 1296
BspPI GGATC 4 cut(s) 791, 1001, 1471, 1484
BspTNI GGTCTC 2 cut(s) 1013, 1365
BsrDI GCAATG 1 cut(s) 483
BsrGI TGTACA 2 cut(s) 1147, 1512
BsrI ACTGG 4 cut(s) 25, 849, 999, 1361
BssECI CCNNGG 2 cut(s) 983, 1237
BssMI GATC 5 cut(s) 169, 796, 989, 1006, 1476
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 2 cut(s) 983, 1237
Bst2UI CCWGG 2 cut(s) 254, 1622
Bst4CI ACNGT 5 cut(s) 413, 1183, 1443, 1519, 1573
BstACI GRCGYC 1 cut(s) 92
BstAUI TGTACA 2 cut(s) 1147, 1512
BstC8I GCNNGC 4 cut(s) 386, 1059, 1292, 1655
BstDEI CTNAG 7 cut(s) 240, 288, 486, 609, 801, 885, 1543
BstEII GGTNACC 1 cut(s) 407
BstF5I GGATG 4 cut(s) 481, 938, 1139, 1158
BstFNI CGCG 2 cut(s) 664, 1657
BstHHI GCGC 2 cut(s) 441, 1290
BstKTI GATC 5 cut(s) 172, 799, 992, 1009, 1479
BstMAI GTCTC 3 cut(s) 51, 1013, 1365
BstMBI GATC 5 cut(s) 169, 796, 989, 1006, 1476
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 2 cut(s) 254, 1622
BstNSI RCATGY 1 cut(s) 1466
BstPI GGTNACC 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 252, 1620
BstSFI CTRYAG 5 cut(s) 567, 767, 1119, 1170, 1292
BstSLI GKGCMC 1 cut(s) 1389
BstUI CGCG 2 cut(s) 664, 1657
BstV1I GCAGC 3 cut(s) 167, 753, 835
BstV2I GAAGAC 1 cut(s) 1271
BstX2I RGATCY 1 cut(s) 1476
BstYI RGATCY 1 cut(s) 1476
Bsu15I ATCGAT 1 cut(s) 992
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 992
BtsCI GGATG 4 cut(s) 481, 938, 1139, 1158
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 1 cut(s) 1116
Cac8I GCNNGC 4 cut(s) 386, 1059, 1292, 1655
CciI TCATGA 1 cut(s) 360
CfoI GCGC 2 cut(s) 441, 1290
Cfr13I GGNCC 2 cut(s) 1234, 1618
ClaI ATCGAT 1 cut(s) 992
CseI GACGC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 1148, 1513
CviAII CATG 4 cut(s) 361, 837, 1016, 1463
CviQI GTAC 2 cut(s) 1148, 1513
DdeI CTNAG 7 cut(s) 240, 288, 486, 609, 801, 885, 1543
DpnI GATC 5 cut(s) 171, 798, 991, 1008, 1478
DpnII GATC 5 cut(s) 169, 796, 989, 1006, 1476
DriI GACNNNNNGTC 1 cut(s) 1585
Eam1105I GACNNNNNGTC 1 cut(s) 1585
EciI GGCGGA 1 cut(s) 931
Eco130I CCWWGG 2 cut(s) 983, 1237
Eco31I GGTCTC 2 cut(s) 1013, 1365
Eco32I GATATC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 1234, 1618
Eco57I CTGAAG 2 cut(s) 330, 575
Eco81I CCTNAGG 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 1234
EcoO65I GGTNACC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 252, 1620
EcoRV GATATC 1 cut(s) 420
EcoT14I CCWWGG 2 cut(s) 983, 1237
EcoT22I ATGCAT 1 cut(s) 483
ErhI CCWWGG 2 cut(s) 983, 1237
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 4 cut(s) 364, 840, 1019, 1466
FalI AAGNNNNNCTT 6 cut(s) 97, 129, 765, 797, 1365, 1397
FatI CATG 4 cut(s) 360, 836, 1015, 1462
FauNDI CATATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 3 cut(s) 566, 652, 1301
Fnu4HI GCNGC 3 cut(s) 156, 767, 824
FokI GGATG 4 cut(s) 468, 925, 1145, 1146
Fsp4HI GCNGC 3 cut(s) 156, 767, 824
FspBI CTAG 5 cut(s) 456, 1073, 1088, 1310, 1497
GlaI GCGC 2 cut(s) 440, 1289
GluI GCNGC 3 cut(s) 156, 767, 824
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 2 cut(s) 42, 1194
HaeIII GGCC 1 cut(s) 509
HapII CCGG 5 cut(s) 56, 143, 226, 368, 503
HgaI GACGC 1 cut(s) 100
HhaI GCGC 2 cut(s) 441, 1290
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 4 cut(s) 364, 840, 1019, 1466
Hin6I GCGC 2 cut(s) 439, 1288
HinP1I GCGC 2 cut(s) 439, 1288
HinfI GANTC 5 cut(s) 833, 877, 1127, 1267, 1541
HpaII CCGG 5 cut(s) 56, 143, 226, 368, 503
HphI GGTGA 6 cut(s) 70, 401, 872, 925, 1106, 1360
Hpy166II GTNNAC 6 cut(s) 567, 653, 1150, 1302, 1387, 1515
Hpy8I GTNNAC 6 cut(s) 567, 653, 1150, 1302, 1387, 1515
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 900, 1085
HpyCH4III ACNGT 5 cut(s) 413, 1183, 1443, 1519, 1573
HpyCH4IV ACGT 2 cut(s) 221, 1613
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 7 cut(s) 240, 288, 486, 609, 801, 885, 1543
HpySE526I ACGT 2 cut(s) 221, 1613
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 4 cut(s) 364, 840, 1019, 1466
HspAI GCGC 2 cut(s) 439, 1288
Kpn2I TCCGGA 3 cut(s) 142, 225, 502
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 5 cut(s) 169, 796, 989, 1006, 1476
LmnI GCTCC 4 cut(s) 58, 138, 845, 1378
Lsp1109I GCAGC 3 cut(s) 167, 753, 835
LweI GCATC 6 cut(s) 289, 490, 984, 1124, 1275, 1573
MaeI CTAG 5 cut(s) 456, 1073, 1088, 1310, 1497
MaeII ACGT 2 cut(s) 221, 1613
MaeIII GTNAC 2 cut(s) 407, 1321
MalI GATC 5 cut(s) 171, 798, 991, 1008, 1478
MboI GATC 5 cut(s) 169, 796, 989, 1006, 1476
MboII GAAGA 5 cut(s) 112, 1276, 1448, 1616, 1619
MfeI CAATTG 2 cut(s) 560, 600
MflI RGATCY 1 cut(s) 1476
MhlI GDGCHC 1 cut(s) 1389
MlyI GAGTC 3 cut(s) 1136, 1261, 1535
MmeI TCCRAC 3 cut(s) 113, 160, 1165
Mph1103I ATGCAT 1 cut(s) 483
MroI TCCGGA 3 cut(s) 142, 225, 502
MseI TTAA 4 cut(s) 188, 756, 1353, 1664
MspA1I CMGCKG 1 cut(s) 826
MspI CCGG 5 cut(s) 56, 143, 226, 368, 503
MspR9I CCNGG 2 cut(s) 254, 1622
MunI CAATTG 2 cut(s) 560, 600
MvaI CCWGG 2 cut(s) 254, 1622
MvnI CGCG 2 cut(s) 664, 1657
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeI CATATG 1 cut(s) 174
NdeII GATC 5 cut(s) 169, 796, 989, 1006, 1476
NlaIII CATG 4 cut(s) 364, 840, 1019, 1466
NlaIV GGNNCC 4 cut(s) 585, 901, 1235, 1478
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 1466
PagI TCATGA 1 cut(s) 360
PfeI GAWTC 2 cut(s) 833, 877
PkrI GCNGC 3 cut(s) 157, 768, 825
PleI GAGTC 3 cut(s) 1135, 1261, 1535
PpsI GAGTC 3 cut(s) 1135, 1261, 1535
PpuMI RGGWCCY 1 cut(s) 1234
PsiI TTATAA 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1234
Psp6I CCWGG 2 cut(s) 252, 1620
PspEI GGTNACC 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 252, 1620
PspN4I GGNNCC 4 cut(s) 585, 901, 1235, 1478
PspPI GGNCC 2 cut(s) 1234, 1618
PspPPI RGGWCCY 1 cut(s) 1234
PstI CTGCAG 3 cut(s) 771, 1123, 1296
PsuI RGATCY 1 cut(s) 1476
RsaI GTAC 2 cut(s) 1149, 1514
RsaNI GTAC 2 cut(s) 1148, 1513
SaqAI TTAA 4 cut(s) 188, 756, 1353, 1664
SatI GCNGC 3 cut(s) 156, 767, 824
Sau3AI GATC 5 cut(s) 169, 796, 989, 1006, 1476
Sau96I GGNCC 2 cut(s) 1234, 1618
SchI GAGTC 3 cut(s) 1136, 1261, 1535
ScrFI CCNGG 2 cut(s) 254, 1622
SduI GDGCHC 1 cut(s) 1389
SfaNI GCATC 6 cut(s) 289, 490, 984, 1124, 1275, 1573
SfcI CTRYAG 5 cut(s) 567, 767, 1119, 1170, 1292
SinI GGWCC 2 cut(s) 1234, 1618
SmlI CTYRAG 1 cut(s) 1559
SmoI CTYRAG 1 cut(s) 1559
SsiI CCGC 4 cut(s) 664, 826, 942, 1657
SspI AATATT 1 cut(s) 1144
SspMI CTAG 5 cut(s) 456, 1073, 1088, 1310, 1497
StyD4I CCNGG 2 cut(s) 252, 1620
StyI CCWWGG 2 cut(s) 983, 1237
TaaI ACNGT 5 cut(s) 413, 1183, 1443, 1519, 1573
TaiI ACGT 2 cut(s) 224, 1616
TaqI TCGA 2 cut(s) 578, 992
TatI WGTACW 2 cut(s) 1147, 1512
TfiI GAWTC 2 cut(s) 833, 877
Tru1I TTAA 4 cut(s) 188, 756, 1353, 1664
Tru9I TTAA 4 cut(s) 188, 756, 1353, 1664
TscAI CASTG 1 cut(s) 1123
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 155, 766, 823
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 6 cut(s) 191, 349, 377, 755, 1415, 1627
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 1123
VneI GTGCAC 1 cut(s) 1385
VpaK11BI GGWCC 2 cut(s) 1234, 1618
XapI RAATTY 3 cut(s) 296, 1534, 1670
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 1 cut(s) 1466
XmiI GTMKAC 3 cut(s) 566, 652, 1301
XspI CTAG 5 cut(s) 456, 1073, 1088, 1310, 1497
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.