Rw7G000160

DNA replication factor CDT1 like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011523
Physical Location & Seq
Forward (+)
192359 .. 197526
5168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000160.1

Sequence Viewer

Length: 1296 bp
ATGGATTTCAAGAATATTGCTACTGGAGTTGAGAAATCAGCTTGTCCGTCTCCTGCTCCGGTGAAAATCCCAGCAGTTGGATGTGAATGTCCGACGCCAGAGAAGATAAGCGACCCTTTGCCCACCAATTTACAGCAGGGACAGCTCCAACTTCCGGACAAGAGTGCAGCAGATTTCCTTGATCATATGAATTGTTCGCTAAGGTTGCTTCGTCTGCGTAAAAAGTCAACTACGTTCCGGAATATATCTACTCAGGTGGAAATCCTGGCAAAAAGAAAGTTCTTATACAGGCATCTTGCTCAGATAAAATTTATACTTCCTGAAGCCATAAAGATAGATTGGGTTTTGGTGTCCGACAAGGAAACTCAATTCATGAAGCCGGATATAAACATCAGCTTGCTATTTGATATTGTAAAAGGGCACCGTGAGATATCTGATTTTACAGCTTTGCGCCAAGTTTTTGCTTCTAGGCTTATGAGTTTCTTTGCAATGCATCCTGAGGCTTCTGATGTTCCGGAGGCCATATTGCCAGAGCCTTTTAGCAAAAGAAGTCAGATACCTGTCCTGAAGCAATTGTCTACAGATTCTTCGATGGAACCTAAACCAACTTCAATTGAAACTGAGCTGTTGTCAGAAAAAGTCTGTCCATATCCCTATATCAGTAGACACTTTTCGCGGAATAATGTTATTGCTAAAACAGAAAAAACCCAAGTCTTATCATCTCCACCACCTCTGCCATCGGCTGATGGTATGAATAACCAAAGTATTAAAAGTGGGCTGCAGGAAGAGTTTCTTGTTGTGTCTTACGATCCTGAGCAAGACATCAAAAATTGGCAGCGGAAAGAATCATGCTCCAAATCCAGTATTATTGACCACTCAATACATCTGAATCACCCTCAGCCTTCTATTGGTTCCAGCATACCTGATAGCCCTCTTGTGAAGCTCACCTCATCTGCCAATAGTTTGATGATAGAAACACCTCAACCATTGACACCAAGGAGATTGATGCCCAGTTGTGATGCCAAGCATGAGACCTTGAACACCCAAAAATCAACATCTTGTTATAAGCCTGCAAAAAGAGTTCTAGACTTCTCTGACCTGGAAGATGATAAAAGTGCATTGGACTACACTGCAGATGAGTCAGGATGCTACAATATTGTACACCAAGACATCCCTAAAGCTATAGGAAAAACTGTCGGAGATAGATACCTCACTTGTTCTCCAGCAAGGCAAGAGGTAGAACGGGTCCTTGGTTGCTCTAATGAGGATGCAAGAAGACTCAAACAAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDT1 CDT1_C

Protein Analysis

431

Amino Acids

48.3

Weight (kDa)

7.56

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDT1 PF08839 68 - 116 2.9e-07 DNA replication factor CDT1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
AccB1I GGYRCC 1 cut(s) 420
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 2 cut(s) 578, 664
AccII CGCG 1 cut(s) 676
AccIII TCCGGA 3 cut(s) 154, 237, 514
AciI CCGC 2 cut(s) 676, 838
AclWI GGATC 1 cut(s) 803
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 342, 587
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 1161
AfiI CCNNNNNNNGG 3 cut(s) 77, 154, 908
AgsI TTSAA 4 cut(s) 10, 612, 617, 1039
AjnI CCWGG 2 cut(s) 264, 1098
AjuI GAANNNNNNNTTGG 2 cut(s) 1233, 1265
AluBI AGCT 8 cut(s) 41, 145, 396, 446, 625, 943, 1181, 1289
AluI AGCT 8 cut(s) 41, 145, 396, 446, 625, 943, 1181, 1289
Alw26I GTCTC 2 cut(s) 54, 1025
AlwI GGATC 1 cut(s) 803
Aor13HI TCCGGA 3 cut(s) 154, 237, 514
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 3 cut(s) 167, 778, 835
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 1246
AsuHPI GGTGA 3 cut(s) 73, 884, 937
AvaII GGWCC 1 cut(s) 1246
AxyI CCTNAGG 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 1282
BbvCI CCTCAGC 1 cut(s) 897
BbvI GCAGC 3 cut(s) 179, 765, 847
BccI CCATC 3 cut(s) 586, 740, 745
BciT130I CCWGG 2 cut(s) 266, 1100
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 54, 1025
BfaI CTAG 2 cut(s) 468, 1085
BfmI CTRYAG 4 cut(s) 579, 779, 1131, 1182
BisI GCNGC 3 cut(s) 168, 779, 836
BlsI GCNGC 3 cut(s) 169, 780, 837
Bme1390I CCNGG 2 cut(s) 266, 1100
Bme18I GGWCC 1 cut(s) 1246
BmgT120I GGNCC 1 cut(s) 1246
BmiI GGNNCC 4 cut(s) 422, 597, 913, 1247
BmrFI CCNGG 2 cut(s) 266, 1100
BmrI ACTGGG 1 cut(s) 1005
BmsI GCATC 6 cut(s) 301, 502, 996, 1009, 1136, 1258
BmuI ACTGGG 1 cut(s) 1005
BpiI GAAGAC 1 cut(s) 1282
BpmI CTGGAG 2 cut(s) 45, 1206
Bpu10I CCTNAGC 3 cut(s) 200, 813, 897
BsaHI GRCGYC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 2 cut(s) 995, 1249
BsaWI WCCGGW 4 cut(s) 58, 154, 237, 514
BsaXI ACNNNNNCTCC 2 cut(s) 1204, 1234
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 154, 908
Bse1I ACTGG 3 cut(s) 28, 861, 1011
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 495
BseAI TCCGGA 3 cut(s) 154, 237, 514
BseBI CCWGG 2 cut(s) 266, 1100
BseDI CCNNGG 2 cut(s) 995, 1249
BseGI GGATG 5 cut(s) 86, 493, 1151, 1170, 1273
BseLI CCNNNNNNNGG 3 cut(s) 77, 154, 908
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 6 cut(s) 266, 314, 489, 612, 804, 911
BseNI ACTGG 3 cut(s) 28, 861, 1011
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 3 cut(s) 179, 765, 847
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 676
BshFI GGCC 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 420
BsiSI CCGG 5 cut(s) 59, 155, 238, 380, 515
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 3 cut(s) 77, 154, 908
BsmAI GTCTC 2 cut(s) 54, 1025
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 1025
Bsp1286I GDGCHC 1 cut(s) 423
Bsp13I TCCGGA 3 cut(s) 154, 237, 514
Bsp1407I TGTACA 1 cut(s) 1159
Bsp143I GATC 2 cut(s) 181, 808
BspACI CCGC 2 cut(s) 676, 838
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 6 cut(s) 265, 313, 490, 613, 805, 910
BspEI TCCGGA 3 cut(s) 154, 237, 514
BspFNI CGCG 1 cut(s) 676
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 422, 597, 913, 1247
BspMAI CTGCAG 2 cut(s) 783, 1135
BspPI GGATC 1 cut(s) 803
BspT107I GGYRCC 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 495
BsrGI TGTACA 1 cut(s) 1159
BsrI ACTGG 3 cut(s) 28, 861, 1011
BssECI CCNNGG 2 cut(s) 995, 1249
BssMI GATC 2 cut(s) 181, 808
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 2 cut(s) 995, 1249
Bst2UI CCWGG 2 cut(s) 266, 1100
Bst4CI ACNGT 2 cut(s) 425, 1195
Bst6I CTCTTC 1 cut(s) 780
BstACI GRCGYC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 1159
BstC8I GCNNGC 2 cut(s) 398, 1071
BstDEI CTNAG 7 cut(s) 200, 252, 300, 498, 621, 813, 897
BstF5I GGATG 5 cut(s) 86, 493, 1151, 1170, 1273
BstFNI CGCG 1 cut(s) 676
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 2 cut(s) 184, 811
BstMAI GTCTC 2 cut(s) 54, 1025
BstMBI GATC 2 cut(s) 181, 808
BstMWI GCNNNNNNNGC 3 cut(s) 142, 205, 214
BstNI CCWGG 2 cut(s) 266, 1100
BstSCI CCNGG 2 cut(s) 264, 1098
BstSFI CTRYAG 4 cut(s) 579, 779, 1131, 1182
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 3 cut(s) 179, 765, 847
BstV2I GAAGAC 1 cut(s) 1282
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 5 cut(s) 86, 493, 1151, 1170, 1273
BtsI GCAGTG 1 cut(s) 1128
BtsIMutI CAGTG 1 cut(s) 1128
Cac8I GCNNGC 2 cut(s) 398, 1071
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 1246
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 1160
CviAII CATG 3 cut(s) 373, 849, 1028
CviQI GTAC 1 cut(s) 1160
DdeI CTNAG 7 cut(s) 200, 252, 300, 498, 621, 813, 897
DpnI GATC 2 cut(s) 183, 810
DpnII GATC 2 cut(s) 181, 808
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
Eco130I CCWWGG 2 cut(s) 995, 1249
Eco31I GGTCTC 1 cut(s) 1025
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 1246
Eco57I CTGAAG 2 cut(s) 342, 587
Eco81I CCTNAGG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 1246
EcoRII CCWGG 2 cut(s) 264, 1098
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 995, 1249
EcoT22I ATGCAT 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 995, 1249
Esp3I CGTCTC 1 cut(s) 54
FaeI CATG 3 cut(s) 376, 852, 1031
FalI AAGNNNNNCTT 4 cut(s) 100, 132, 777, 809
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 372, 848, 1027
FauNDI CATATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 2 cut(s) 578, 664
Fnu4HI GCNGC 3 cut(s) 168, 779, 836
FokI GGATG 5 cut(s) 93, 480, 1157, 1158, 1280
Fsp4HI GCNGC 3 cut(s) 168, 779, 836
FspBI CTAG 2 cut(s) 468, 1085
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 168, 779, 836
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 2 cut(s) 45, 1206
HaeIII GGCC 1 cut(s) 521
HapII CCGG 5 cut(s) 59, 155, 238, 380, 515
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 453
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 3 cut(s) 376, 852, 1031
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 5 cut(s) 584, 845, 889, 1139, 1278
HpaII CCGG 5 cut(s) 59, 155, 238, 380, 515
HphI GGTGA 3 cut(s) 73, 884, 937
Hpy166II GTNNAC 4 cut(s) 228, 579, 665, 1162
Hpy8I GTNNAC 4 cut(s) 228, 579, 665, 1162
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 912
HpyCH4III ACNGT 2 cut(s) 425, 1195
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 8 cut(s) 167, 488, 493, 781, 1073, 1118, 1133, 1271
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 205, 214
HpyF3I CTNAG 7 cut(s) 200, 252, 300, 498, 621, 813, 897
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 3 cut(s) 376, 852, 1031
HspAI GCGC 1 cut(s) 451
Kpn2I TCCGGA 3 cut(s) 154, 237, 514
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 808
LmnI GCTCC 3 cut(s) 61, 150, 857
Lsp1109I GCAGC 3 cut(s) 179, 765, 847
LweI GCATC 6 cut(s) 301, 502, 996, 1009, 1136, 1258
MaeI CTAG 2 cut(s) 468, 1085
MaeII ACGT 1 cut(s) 233
MalI GATC 2 cut(s) 183, 810
MboI GATC 2 cut(s) 181, 808
MboII GAAGA 5 cut(s) 115, 579, 797, 1115, 1287
MfeI CAATTG 2 cut(s) 572, 612
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 7 cut(s) 127, 190, 308, 368, 572, 612, 829
MlyI GAGTC 2 cut(s) 1148, 1272
MmeI TCCRAC 5 cut(s) 58, 116, 172, 378, 1177
Mph1103I ATGCAT 1 cut(s) 495
MroI TCCGGA 3 cut(s) 154, 237, 514
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 838
MspI CCGG 5 cut(s) 59, 155, 238, 380, 515
MspR9I CCNGG 2 cut(s) 266, 1100
MunI CAATTG 2 cut(s) 572, 612
MvaI CCWGG 2 cut(s) 266, 1100
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 3 cut(s) 142, 205, 214
NdeI CATATG 1 cut(s) 186
NdeII GATC 2 cut(s) 181, 808
NlaIII CATG 3 cut(s) 376, 852, 1031
NlaIV GGNNCC 4 cut(s) 422, 597, 913, 1247
NsiI ATGCAT 1 cut(s) 495
PagI TCATGA 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 584, 845, 889
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 3 cut(s) 169, 780, 837
PleI GAGTC 2 cut(s) 1147, 1272
PpsI GAGTC 2 cut(s) 1147, 1272
PpuMI RGGWCCY 1 cut(s) 1246
PsiI TTATAA 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1246
Psp6I CCWGG 2 cut(s) 264, 1098
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 2 cut(s) 264, 1098
PspN4I GGNNCC 4 cut(s) 422, 597, 913, 1247
PspPI GGNCC 1 cut(s) 1246
PspPPI RGGWCCY 1 cut(s) 1246
PstI CTGCAG 2 cut(s) 783, 1135
RsaI GTAC 1 cut(s) 1161
RsaNI GTAC 1 cut(s) 1160
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 3 cut(s) 168, 779, 836
Sau3AI GATC 2 cut(s) 181, 808
Sau96I GGNCC 1 cut(s) 1246
SchI GAGTC 2 cut(s) 1148, 1272
ScrFI CCNGG 2 cut(s) 266, 1100
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 6 cut(s) 301, 502, 996, 1009, 1136, 1258
SfcI CTRYAG 4 cut(s) 579, 779, 1131, 1182
SinI GGWCC 1 cut(s) 1246
Sse9I AATT 7 cut(s) 127, 190, 308, 368, 572, 612, 829
SsiI CCGC 2 cut(s) 676, 838
SspI AATATT 2 cut(s) 16, 1156
SspMI CTAG 2 cut(s) 468, 1085
StyD4I CCNGG 2 cut(s) 264, 1098
StyI CCWWGG 2 cut(s) 995, 1249
TaaI ACNGT 2 cut(s) 425, 1195
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 590
TasI AATT 7 cut(s) 127, 190, 308, 368, 572, 612, 829
TatI WGTACW 1 cut(s) 1159
TfiI GAWTC 3 cut(s) 584, 845, 889
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 1 cut(s) 1135
TseI GCWGC 3 cut(s) 167, 778, 835
TspDTI ATGAA 4 cut(s) 203, 361, 389, 767
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 1135
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 1246
XapI RAATTY 1 cut(s) 308
XbaI TCTAGA 1 cut(s) 1084
XmiI GTMKAC 2 cut(s) 578, 664
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 468, 1085
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.