FvH4_5g18520

DNA replication factor CDT1 like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
10654785 .. 10659920
5136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18520.t1

Sequence Viewer

Length: 1620 bp
ATGGATTTCCACTGTGAAAAGATTCTCACCGGAGTTGAGAATTCAGCTACTCCGGTGAAAATCACATCAAACAAGATTGAATGTCCGACGCCGGAGAAGCTCAGCGACCCTTTGCCCACCAATTTTCTGGACGGGAAAGCACAGCTTCCAAAAAATTACAGGACTACAGCAGATTTTCTTGATCATATGAACTGCTCACTGCGGCTGCTTTGTCTGCGCAAAAGGTCAACTACGTTTCAGAATGTATCTACGCAGGTGGAAATCCTGGCCAAAAGAAAGTTCTTGTACAGGCATCTTGCTCAGATTAAATTTATACTTCCTGAAGCGATAAAGATAGATTGGGTTTTGGTGTCTGACAAGGAAACTCAGTTCATGAAGCCGGATATGAACATCAGCTTGCTATTTGATATTGTAAAAGGCCACCATGAAATATCTGATTTTATAGCTTTGCGCCAAGTTTTTGCTTCTAGGCTTATGAGTTTCTTTGCAATGCATCCTGAGACTTCTGATGTTCCAGAGGCCATATTGCCAGAGCCTTTTAGCAAAAGAAGTCAGAGACCTGTCCTGAAGCAATTGTCTGCAGATTATTTGACAGAACCTCAACCAGCTTCAAATGAAACTGAGCTGTTGTCAGAAAAAGTATGTCTGTATCCATATATCAGCAGACACTTTTCGCGGAATAATATTGTTTCTGAAACAGAAAAAGCACAAGTCTTATGTTCTCCACTACCTCTGCCATCAGCTGATGGTATGAATAACCAAGGTATTAAGGATGGGCTGCAGAAACAGTTTCTTGTTCTGTCTCATGATCCTGAGCAAGACATAAAAAATTGGAAGCCGAAAGAACCGTGCTCCAAACCTAGTATTATTGACCACTCAATACATCTGAACCATCCTCAGCCTCCTATTGGTTCTAGTGTACCTGATAGCCCTCTTGTGAAGCTCACCTCATCTGCCAATAGTTTGATGGTAGAAACTCCTCAACCATTGCCACCAAGGAGATCAATGCCCAGTTGTGATGCCAAGCATGAGACCTTGGACACCCAAAAATCAACATCTTGTAATAAGCCTGCAAAAAGAGTTCTTGACTTCTCAGACCTAGAAGGTGATAAAAGTGCAGTGGACTCCACTGTAGATGAGTCAACAGGCTACAAAATTGTACACCAAGACATCCCTAAAGCTACAGGAAAAACTGTCGAAGATAGACACCTCACTTGTTCTCCAGCATCGCAAGAGGTAAAACGTGTCCTTGGTTTCTCAAATGAGGATTGCAAGAAGACTCAAACAAGCTCATCAATGCGCCTGCAGATGTCTACTCGCCTAGCTGAAATTGTTACTCTAATTTATGGTGTTTTGAAGTCTTTTAACTGGTCTTCTATCACCAAAGAGGAGCTTGTGCACAAGATAATTATGAATAGTCTTGATGTTGTTGAAAGGAAAGAAGTTGAAGAACAGTTTGAGCTTCTTGAAAGGCATGTTCCAGATTGGATCCAGAGCAAGTTGCTTTCTAGTGGGGATATTATGTACACCGTCAAGAAGGTTCCAAATTTGGACTCAGTTCTGTCAAAGCTTAAGCATCAGATAGTTTCAGACCAAAAGGTGGAAGCATCTGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

60.81

Weight (kDa)

6.64

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDT1 PF08839 49 - 115 1.7e-08 DNA replication factor CDT1 like
CDT1_C PF16679 427 - 500 1.7e-09 DNA replication factor Cdt1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc16I TGCGCA 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 1600
AccI GTMKAC 1 cut(s) 1313
AccII CGCG 1 cut(s) 676
AciI CCGC 2 cut(s) 202, 676
AclWI GGATC 3 cut(s) 803, 1483, 1496
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 40, 308, 1546
AcuI CTGAAG 2 cut(s) 342, 587
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 4 cut(s) 287, 921, 1161, 1526
AfiI CCNNNNNNNGG 2 cut(s) 908, 1600
AflII CTTAAG 1 cut(s) 1571
AflIII ACRYGT 1 cut(s) 1243
AgsI TTSAA 6 cut(s) 80, 612, 1357, 1433, 1448, 1469
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
Alw21I GWGCWC 2 cut(s) 854, 1401
Alw26I GTCTC 4 cut(s) 494, 550, 807, 1025
Alw44I GTGCAC 1 cut(s) 1397
AlwI GGATC 3 cut(s) 803, 1483, 1496
AoxI GGCC 3 cut(s) 267, 418, 519
ApaLI GTGCAC 1 cut(s) 1397
ApeKI GCWGC 2 cut(s) 205, 778
ApoI RAATTY 3 cut(s) 40, 308, 1546
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 3 cut(s) 219, 453, 1302
AsuHPI GGTGA 5 cut(s) 19, 67, 937, 1118, 1372
BaeGI GKGCMC 1 cut(s) 1401
BalI TGGCCA 1 cut(s) 269
BamHI GGATCC 1 cut(s) 1488
BbsI GAAGAC 2 cut(s) 1283, 1365
Bbv12I GWGCWC 2 cut(s) 854, 1401
BbvCI CCTCAGC 1 cut(s) 897
BbvI GCAGC 2 cut(s) 192, 765
BccI CCATC 5 cut(s) 740, 745, 767, 900, 961
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 4 cut(s) 494, 550, 807, 1025
BfaI CTAG 6 cut(s) 468, 861, 915, 1100, 1322, 1509
BfmI CTRYAG 6 cut(s) 165, 579, 779, 1131, 1182, 1304
BfrI CTTAAG 1 cut(s) 1571
BfuAI ACCTGC 1 cut(s) 244
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 3 cut(s) 203, 206, 779
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 3 cut(s) 204, 207, 780
Bme1390I CCNGG 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 1490, 1542
BmrFI CCNGG 1 cut(s) 266
BmrI ACTGGG 1 cut(s) 1005
BmsI GCATC 6 cut(s) 301, 502, 1009, 1235, 1585, 1616
BmuI ACTGGG 1 cut(s) 1005
BpiI GAAGAC 2 cut(s) 1283, 1365
BpmI CTGGAG 1 cut(s) 1206
Bpu10I CCTNAGC 2 cut(s) 813, 897
Bpu1102I GCTNAGC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 2 cut(s) 550, 1025
BsaJI CCNNGG 4 cut(s) 760, 995, 1035, 1249
BsaWI WCCGGW 2 cut(s) 29, 52
BsaXI ACNNNNNCTCC 2 cut(s) 1204, 1234
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1600
Bse1I ACTGG 2 cut(s) 1011, 1373
Bse3DI GCAATG 2 cut(s) 495, 986
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 4 cut(s) 760, 995, 1035, 1249
BseGI GGATG 4 cut(s) 493, 778, 892, 1170
BseLI CCNNNNNNNGG 2 cut(s) 908, 1600
BseMI GCAATG 2 cut(s) 495, 986
BseNI ACTGG 2 cut(s) 1011, 1373
BseRI GAGGAG 2 cut(s) 969, 1403
BseSI GKGCMC 1 cut(s) 1401
BseXI GCAGC 2 cut(s) 192, 765
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 676
BshFI GGCC 3 cut(s) 269, 420, 521
BsiHKAI GWGCWC 2 cut(s) 854, 1401
BsiSI CCGG 4 cut(s) 30, 53, 92, 380
BslI CCNNNNNNNGG 2 cut(s) 908, 1600
BsmAI GTCTC 4 cut(s) 494, 550, 807, 1025
BsnI GGCC 3 cut(s) 269, 420, 521
Bso31I GGTCTC 2 cut(s) 550, 1025
Bsp1286I GDGCHC 2 cut(s) 854, 1401
Bsp1407I TGTACA 3 cut(s) 285, 1159, 1524
Bsp143I GATC 4 cut(s) 181, 808, 1001, 1488
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 2 cut(s) 202, 676
BspANI GGCC 3 cut(s) 269, 420, 521
BspFNI CGCG 1 cut(s) 676
BspHI TCATGA 2 cut(s) 372, 805
BspLI GGNNCC 2 cut(s) 1490, 1542
BspMAI CTGCAG 3 cut(s) 583, 783, 1308
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 3 cut(s) 803, 1483, 1496
BspTI CTTAAG 1 cut(s) 1571
BspTNI GGTCTC 2 cut(s) 550, 1025
BsrDI GCAATG 2 cut(s) 495, 986
BsrGI TGTACA 3 cut(s) 285, 1159, 1524
BsrI ACTGG 2 cut(s) 1011, 1373
BssECI CCNNGG 4 cut(s) 760, 995, 1035, 1249
BssMI GATC 4 cut(s) 181, 808, 1001, 1488
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 4 cut(s) 760, 995, 1035, 1249
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 7 cut(s) 14, 789, 849, 1132, 1195, 1455, 1531
BstACI GRCGYC 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 1571
BstAUI TGTACA 3 cut(s) 285, 1159, 1524
BstC8I GCNNGC 3 cut(s) 398, 1071, 1304
BstF5I GGATG 4 cut(s) 493, 778, 892, 1170
BstFNI CGCG 1 cut(s) 676
BstHHI GCGC 3 cut(s) 219, 453, 1302
BstKTI GATC 4 cut(s) 184, 811, 1004, 1491
BstMAI GTCTC 4 cut(s) 494, 550, 807, 1025
BstMBI GATC 4 cut(s) 181, 808, 1001, 1488
BstMWI GCNNNNNNNGC 2 cut(s) 97, 214
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 1478
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 6 cut(s) 165, 579, 779, 1131, 1182, 1304
BstSLI GKGCMC 1 cut(s) 1401
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 2 cut(s) 192, 765
BstV2I GAAGAC 2 cut(s) 1283, 1365
BstX2I RGATCY 1 cut(s) 1488
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 1488
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 3 cut(s) 269, 420, 521
BtgZI GCGATG 1 cut(s) 1212
BtsCI GGATG 4 cut(s) 493, 778, 892, 1170
BtsI GCAGTG 2 cut(s) 197, 1125
BtsIMutI CAGTG 4 cut(s) 10, 197, 1125, 1128
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 3 cut(s) 398, 1071, 1304
CciI TCATGA 2 cut(s) 372, 805
CfoI GCGC 3 cut(s) 219, 453, 1302
CseI GACGC 1 cut(s) 97
Csp6I GTAC 4 cut(s) 286, 920, 1160, 1525
CviAII CATG 5 cut(s) 373, 425, 806, 1028, 1475
CviQI GTAC 4 cut(s) 286, 920, 1160, 1525
DpnI GATC 4 cut(s) 183, 810, 1003, 1490
DpnII GATC 4 cut(s) 181, 808, 1001, 1488
EaeI YGGCCR 1 cut(s) 267
Eco130I CCWWGG 4 cut(s) 760, 995, 1035, 1249
Eco31I GGTCTC 2 cut(s) 550, 1025
Eco57I CTGAAG 2 cut(s) 342, 587
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 4 cut(s) 760, 995, 1035, 1249
EcoT22I ATGCAT 1 cut(s) 495
ErhI CCWWGG 4 cut(s) 760, 995, 1035, 1249
FaeI CATG 5 cut(s) 376, 428, 809, 1031, 1478
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 1377, 1409
FatI CATG 5 cut(s) 372, 424, 805, 1027, 1474
FauNDI CATATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 1313
Fnu4HI GCNGC 3 cut(s) 203, 206, 779
FokI GGATG 4 cut(s) 480, 785, 879, 1157
Fsp4HI GCNGC 3 cut(s) 203, 206, 779
FspBI CTAG 6 cut(s) 468, 861, 915, 1100, 1322, 1509
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 3 cut(s) 218, 452, 1301
GluI GCNGC 3 cut(s) 203, 206, 779
GsuI CTGGAG 1 cut(s) 1206
HaeIII GGCC 3 cut(s) 269, 420, 521
HapII CCGG 4 cut(s) 30, 53, 92, 380
HgaI GACGC 1 cut(s) 97
HhaI GCGC 3 cut(s) 219, 453, 1302
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 5 cut(s) 376, 428, 809, 1031, 1478
Hin6I GCGC 3 cut(s) 217, 451, 1300
HinP1I GCGC 3 cut(s) 217, 451, 1300
HincII GTYRAC 2 cut(s) 228, 1143
HindII GTYRAC 2 cut(s) 228, 1143
HindIII AAGCTT 1 cut(s) 1568
HinfI GANTC 5 cut(s) 22, 1124, 1139, 1279, 1553
HpaII CCGG 4 cut(s) 30, 53, 92, 380
HphI GGTGA 5 cut(s) 19, 67, 937, 1118, 1372
Hpy166II GTNNAC 8 cut(s) 228, 920, 1123, 1143, 1162, 1314, 1399, 1527
Hpy8I GTNNAC 8 cut(s) 228, 920, 1123, 1143, 1162, 1314, 1399, 1527
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 1097, 1531
HpyCH4III ACNGT 7 cut(s) 14, 789, 849, 1132, 1195, 1455, 1531
HpyCH4IV ACGT 2 cut(s) 233, 1243
HpyCH4V TGCA 9 cut(s) 488, 493, 581, 781, 1073, 1118, 1272, 1306, 1399
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 214
HpySE526I ACGT 2 cut(s) 233, 1243
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 5 cut(s) 376, 428, 809, 1031, 1478
HspAI GCGC 3 cut(s) 217, 451, 1300
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 4 cut(s) 181, 808, 1001, 1488
LmnI GCTCC 2 cut(s) 857, 1390
Lsp1109I GCAGC 2 cut(s) 192, 765
LweI GCATC 6 cut(s) 301, 502, 1009, 1235, 1585, 1616
MaeI CTAG 6 cut(s) 468, 861, 915, 1100, 1322, 1509
MaeII ACGT 2 cut(s) 233, 1243
MaeIII GTNAC 1 cut(s) 1333
MalI GATC 4 cut(s) 183, 810, 1003, 1490
MboI GATC 4 cut(s) 181, 808, 1001, 1488
MboII GAAGA 4 cut(s) 1211, 1288, 1365, 1460
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 1488
MhlI GDGCHC 2 cut(s) 854, 1401
MlsI TGGCCA 1 cut(s) 269
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 4 cut(s) 1118, 1148, 1273, 1547
MmeI TCCRAC 1 cut(s) 110
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 269
MseI TTAA 4 cut(s) 306, 768, 1365, 1572
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 743
MspCI CTTAAG 1 cut(s) 1571
MspI CCGG 4 cut(s) 30, 53, 92, 380
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 2 cut(s) 97, 214
NdeI CATATG 1 cut(s) 186
NdeII GATC 4 cut(s) 181, 808, 1001, 1488
NlaIII CATG 5 cut(s) 376, 428, 809, 1031, 1478
NlaIV GGNNCC 2 cut(s) 1490, 1542
NsbI TGCGCA 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 495
NspI RCATGY 1 cut(s) 1478
PagI TCATGA 2 cut(s) 372, 805
PaqCI CACCTGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 1600
PkrI GCNGC 3 cut(s) 204, 207, 780
PleI GAGTC 4 cut(s) 1118, 1147, 1273, 1547
PpsI GAGTC 4 cut(s) 1118, 1147, 1273, 1547
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 1490, 1542
PstI CTGCAG 3 cut(s) 583, 783, 1308
PsuI RGATCY 1 cut(s) 1488
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 4 cut(s) 287, 921, 1161, 1526
RsaNI GTAC 4 cut(s) 286, 920, 1160, 1525
SaqAI TTAA 4 cut(s) 306, 768, 1365, 1572
SatI GCNGC 3 cut(s) 203, 206, 779
Sau3AI GATC 4 cut(s) 181, 808, 1001, 1488
SchI GAGTC 4 cut(s) 1118, 1148, 1273, 1547
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 2 cut(s) 854, 1401
SfaNI GCATC 6 cut(s) 301, 502, 1009, 1235, 1585, 1616
SfcI CTRYAG 6 cut(s) 165, 579, 779, 1131, 1182, 1304
SmlI CTYRAG 1 cut(s) 1571
SmoI CTYRAG 1 cut(s) 1571
SsiI CCGC 2 cut(s) 202, 676
SspI AATATT 1 cut(s) 685
SspMI CTAG 6 cut(s) 468, 861, 915, 1100, 1322, 1509
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 4 cut(s) 760, 995, 1035, 1249
TaaI ACNGT 7 cut(s) 14, 789, 849, 1132, 1195, 1455, 1531
TaiI ACGT 2 cut(s) 236, 1246
TaqI TCGA 1 cut(s) 1197
TatI WGTACW 3 cut(s) 285, 1159, 1524
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 4 cut(s) 306, 768, 1365, 1572
Tru9I TTAA 4 cut(s) 306, 768, 1365, 1572
TscAI CASTG 4 cut(s) 17, 204, 1125, 1135
TseI GCWGC 2 cut(s) 205, 778
TspDTI ATGAA 8 cut(s) 203, 361, 389, 401, 441, 630, 767, 1427
TspRI CASTG 4 cut(s) 17, 204, 1125, 1135
Van91I CCANNNNNTGG 1 cut(s) 1600
Vha464I CTTAAG 1 cut(s) 1571
VneI GTGCAC 1 cut(s) 1397
XapI RAATTY 3 cut(s) 40, 308, 1546
XceI RCATGY 1 cut(s) 1478
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 964
XmiI GTMKAC 1 cut(s) 1313
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 6 cut(s) 468, 861, 915, 1100, 1322, 1509
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.