Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011523

Physical Location & Seq

Genomic Coordinates Reverse (-)

23742900 .. 23743271

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1150800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAATGGAGGAGCAAATTCCAATCATCTCACATGCAAAGAGGGATCAGCAGAGGATTTCCGGCCTACCTAAGCTCGTCGACACGATTCATTTCGTATTTCAGTCATTCAACTATTCTGCCATCACAAAAGAAGAGCTTGTGCACAAGCTAATTTGGAATAATTTTGAATTTACCGACACAAGTACGCCATCGTATAAAAGTAAATCATTTCCATTACGGTTCACGAAAGCTCCTGGTGAACCTAACTCCGTTTCTATTATCTTCACAGATGAAGTTGAAGAGCAGCTTACCTTGCTGCTAGATCTGGTTCCAGAATGGATTTCTGAAGAAAAGTCGGAATCCGGAGGAGATTTGCTTTTGATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

124

Amino Acids

14.1

Weight (kDa)

4.78

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21760 FvH4_5g18520 FvH4_5g18520
malus_domestica	MD10G1150800.v1.1 MD14G1246400.v1.1
prunus_persica	Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.8G198500_v2.0.a1
pyrus_communis	pycom05g17860
rosa_chinensis	RchiOBHm_Chr7g0176981
rosa_laevigata	RLG00000005566
rosa_multiflora	Rmu_sc0005310.1_g000033
rosa_roxburghii	Rroxscaffold_3G00276190
rosa_rugosa	Rorug06G0402800
rosa_samantha	Rh7AG002100 Rh7BG002500 Rh7CG001800 Rh7DG002400
rosa_wichuraiana	Rw7G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	344
AclWI	GGATC	2 cut(s)	54, 358
AcsI	RAATTY	2 cut(s)	18, 170
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	112, 170, 281
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	5 cut(s)	76, 139, 151, 233, 289
AluI	AGCT	5 cut(s)	76, 139, 151, 233, 289
Alw21I	GWGCWC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	54, 358
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	286, 298
ApoI	RAATTY	2 cut(s)	18, 170
AsuHPI	GGTGA	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	285, 298
BccI	CCATC	2 cut(s)	131, 199
BciT130I	CCWGG	1 cut(s)	237
BfaI	CTAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	2 cut(s)	287, 299
BlsI	GCNGC	2 cut(s)	288, 300
Bme1390I	CCNGG	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	26, 363
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	285, 298
BshFI	GGCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	63, 345
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	46, 304, 363
BspANI	GGCC	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	54, 358
BspQI	GCTCTTC	2 cut(s)	129, 276
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	3 cut(s)	46, 304, 363
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	129, 276
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	49, 307, 366
BstMBI	GATC	3 cut(s)	46, 304, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	285, 298
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	6 cut(s)	66, 76, 139, 151, 233, 289
CviKI_1	RGCY	6 cut(s)	66, 76, 139, 151, 233, 289
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	48, 306, 365
DpnII	GATC	3 cut(s)	46, 304, 363
Eam1104I	CTCTTC	2 cut(s)	129, 276
EarI	CTCTTC	2 cut(s)	129, 276
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	38
FaiI	YATR	2 cut(s)	36, 198
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 273, 305
FatI	CATG	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	287, 299
Fsp4HI	GCNGC	2 cut(s)	287, 299
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	2 cut(s)	287, 299
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	63, 345
Hin1II	CATG	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	88, 341
HpaII	CCGG	2 cut(s)	63, 345
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	4 cut(s)	82, 145, 225, 242
Hpy188I	TCNGA	2 cut(s)	328, 340
Hpy188III	TCNNGA	3 cut(s)	226, 314, 345
Hpy8I	GTNNAC	4 cut(s)	82, 145, 225, 242
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	38, 145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	3 cut(s)	46, 304, 363
LguI	GCTCTTC	2 cut(s)	129, 276
LmnI	GCTCC	2 cut(s)	13, 238
LpnPI	CCDG	6 cut(s)	76, 222, 249, 293, 327, 358
Lsp1109I	GCAGC	2 cut(s)	285, 298
MaeI	CTAG	1 cut(s)	302
MalI	GATC	3 cut(s)	48, 306, 365
MboI	GATC	3 cut(s)	46, 304, 363
MboII	GAAGA	4 cut(s)	146, 256, 293, 341
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	4 cut(s)	18, 153, 163, 170
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	4 cut(s)	4, 36, 48, 341
MroI	TCCGGA	1 cut(s)	344
MspI	CCGG	2 cut(s)	63, 345
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	3 cut(s)	46, 304, 363
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	38
PciSI	GCTCTTC	2 cut(s)	129, 276
PfeI	GAWTC	2 cut(s)	88, 341
PkrI	GCNGC	2 cut(s)	288, 300
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	2 cut(s)	129, 276
SatI	GCNGC	2 cut(s)	287, 299
Sau3AI	GATC	3 cut(s)	46, 304, 363
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	8 cut(s)	73, 78, 141, 153, 235, 247, 291, 296
Sse9I	AATT	4 cut(s)	18, 153, 163, 170
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	18, 153, 163, 170
TfiI	GAWTC	2 cut(s)	88, 341
TseI	GCWGC	2 cut(s)	286, 298
TspDTI	ATGAA	2 cut(s)	80, 288
TspGWI	ACGGA	1 cut(s)	241
VneI	GTGCAC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	18, 170
XceI	RCATGY	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.