Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016264

Physical Location & Seq

Genomic Coordinates Reverse (-)

18841062 .. 18842914

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTTACGTTGCGGTGTCAACCGATTCAGGAAGCATAGCCTTGGGGAGGAGGGACATTCTGATTGCCTGGAGAGGAACCAAGTTGAATTCTGAACTTGATGTCGACAAGGTCACCAAACTACGCTCGGCTCCTCAAATTTTTGGACACGAGAATGCTGCCGCTATGGTGCACTCTGGATGGTTTGATTATTACACCCATGTTGACTCTAGGGCACCCAAGAACAAAACTACTAGTTGCAGAGATCAGGTCCTAGCAGCAGTTAGAACCCTGGTGAATGAATACGCTGAAAAGGAGGATTTCGAACTCAGCATTACTATAACTGGCCGCGGTACTGGTGCTGCATTTGCAATTTTTAGTGGGATGGATATTGTCTGCAACTCGTACAATTCTCCTACGACTGATACCGAAAAGGCATGTCTGGTCACGGCGATTGTCTTTGGCGCCCCCCGTGTTGGAAATGAAGCCTTTGCGACATTGCAGTCCACACAGGACATGCTTCAGATCTTGCGGGTCACAAATGAACTAGATCCAATGCCTAAACTTTTGCCTGCTCTGGAATATTATAAAAAGATTGGAGAAGAGGTGAGACTTAACACAATCAATTCGCCCTTCTTGAAGAGTCCAAAAGATCACGCACACGAGTTGGAGGTTCACTTGCACGGGATTGCGGCACAACAAGGGGTCAACGGCGCTTTCAATTCGACTGGAGTCCGCGATCTCCTGATGGTGAACAAAACATTGGACGGTCTTAAGGATGATCATAAGGTAGTCCCTGCCATCTGGGTTTTACATAAGTTCATGGTTCAAGATGACAATGGCAAATGGGCGATGAAGGATGATCCCGTCGATGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

287

Amino Acids

31.56

Weight (kDa)

5.72

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	22 - 184	3.2e-21	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22960 FvH4_2g22990
rosa_chinensis	RchiOBHm_Chr6g0289981
rosa_laevigata	RLG00000012253 RLG00000012254 RLG00000012255
rosa_multiflora	Rmu_sc0002902.1_g000066 Rmu_sc0003927.1_g000011
rosa_roxburghii	Rroxscaffold_7G00177450
rosa_rugosa	Rorug06G0208200
rosa_samantha	Rh6AG319600 Rh6BG326700 Rh6CG332500 Rh6DG318400
rosa_wichuraiana	Rw6G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AasI	GACNNNNNNGTC	1 cut(s)	481
AccB1I	GGYRCC	2 cut(s)	214, 443
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	2 cut(s)	330, 717
AciI	CCGC	7 cut(s)	14, 162, 328, 330, 511, 671, 715
AclWI	GGATC	2 cut(s)	524, 836
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	88, 138
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	2 cut(s)	334, 386
AfiI	CCNNNNNNNGG	2 cut(s)	48, 455
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	4 cut(s)	88, 619, 700, 809
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	68, 270
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	583
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	524, 836
AoxI	GGCC	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	3 cut(s)	158, 257, 341
ApoI	RAATTY	2 cut(s)	88, 138
AspLEI	GCGC	2 cut(s)	446, 695
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	4 cut(s)	106, 286, 598, 742
AsuII	TTCGAA	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	2 cut(s)	174, 217
BanI	GGYRCC	2 cut(s)	214, 443
BauI	CACGAG	2 cut(s)	149, 641
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	145, 269, 328
BccI	CCATC	4 cut(s)	174, 358, 721, 788
BceAI	ACGGC	2 cut(s)	444, 706
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	70, 272
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	1 cut(s)	583
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	4 cut(s)	210, 234, 254, 527
BfoI	RGCGCY	2 cut(s)	447, 696
BfrI	CTTAAG	1 cut(s)	752
BglII	AGATCT	1 cut(s)	504
BisI	GCNGC	6 cut(s)	159, 162, 258, 328, 342, 672
BlsI	GCNGC	6 cut(s)	160, 163, 259, 329, 343, 673
Bme1390I	CCNGG	2 cut(s)	70, 272
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	4 cut(s)	79, 132, 216, 445
BmrFI	CCNGG	2 cut(s)	70, 272
BoxI	GACNNNNGTC	1 cut(s)	710
BpmI	CTGGAG	2 cut(s)	91, 729
Bpu14I	TTCGAA	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	42, 270, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 455
Bse1I	ACTGG	3 cut(s)	328, 340, 712
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	70, 272
BseDI	CCNNGG	3 cut(s)	42, 270, 328
BseGI	GGATG	4 cut(s)	185, 369, 763, 844
BseLI	CCNNNNNNNGG	2 cut(s)	48, 455
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	3 cut(s)	328, 340, 712
BseRI	GAGGAG	2 cut(s)	64, 123
BseSI	GKGCMC	2 cut(s)	174, 217
BseXI	GCAGC	3 cut(s)	145, 269, 328
Bsh1236I	CGCG	2 cut(s)	330, 717
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	2 cut(s)	214, 443
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	68, 758
BslI	CCNNNNNNNGG	2 cut(s)	48, 455
BsmAI	GTCTC	1 cut(s)	583
BsmFI	GGGAC	2 cut(s)	68, 758
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	174, 217
Bsp143I	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
BspACI	CCGC	7 cut(s)	14, 162, 328, 330, 511, 671, 715
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	2 cut(s)	330, 717
BspLI	GGNNCC	4 cut(s)	79, 132, 216, 445
BspPI	GGATC	2 cut(s)	524, 836
BspT104I	TTCGAA	1 cut(s)	303
BspT107I	GGYRCC	2 cut(s)	214, 443
BspTI	CTTAAG	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	328, 340, 712
BssECI	CCNNGG	3 cut(s)	42, 270, 328
BssMI	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	2 cut(s)	149, 641
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	2 cut(s)	149, 641
Bst2UI	CCWGG	2 cut(s)	70, 272
Bst4CI	ACNGT	1 cut(s)	749
Bst6I	CTCTTC	2 cut(s)	576, 614
BstACI	GRCGYC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	328
BstEII	GGTNACC	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	4 cut(s)	185, 369, 763, 844
BstFNI	CGCG	2 cut(s)	330, 717
BstH2I	RGCGCY	2 cut(s)	447, 696
BstHHI	GCGC	2 cut(s)	446, 695
BstKTI	GATC	7 cut(s)	247, 507, 532, 634, 721, 763, 844
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 347
BstNI	CCWGG	2 cut(s)	70, 272
BstNSI	RCATGY	2 cut(s)	420, 499
BstPAI	GACNNNNGTC	1 cut(s)	710
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	68, 270
BstSLI	GKGCMC	2 cut(s)	174, 217
BstUI	CGCG	2 cut(s)	330, 717
BstV1I	GCAGC	3 cut(s)	145, 269, 328
BstX2I	RGATCY	2 cut(s)	504, 529
BstYI	RGATCY	2 cut(s)	504, 529
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	845
BtsCI	GGATG	4 cut(s)	185, 369, 763, 844
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	2 cut(s)	446, 695
Cfr13I	GGNCC	1 cut(s)	250
Cfr42I	CCGCGG	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	333, 385
CviAII	CATG	4 cut(s)	200, 417, 496, 802
CviJI	RGCY	5 cut(s)	5, 41, 131, 327, 467
CviKI_1	RGCY	5 cut(s)	5, 41, 131, 327, 467
CviQI	GTAC	2 cut(s)	333, 385
DdeI	CTNAG	1 cut(s)	308
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	7 cut(s)	246, 506, 531, 633, 720, 762, 843
DpnII	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	576, 614
EarI	CTCTTC	2 cut(s)	576, 614
Eco130I	CCWWGG	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	485
Eco91I	GGTNACC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	68, 270
EcoT14I	CCWWGG	1 cut(s)	42
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	4 cut(s)	203, 420, 499, 805
FaqI	GGGAC	2 cut(s)	68, 758
FatI	CATG	4 cut(s)	199, 416, 495, 801
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	159, 162, 258, 328, 342, 672
FokI	GGATG	4 cut(s)	192, 376, 770, 851
Fsp4HI	GCNGC	6 cut(s)	159, 162, 258, 328, 342, 672
FspBI	CTAG	4 cut(s)	210, 234, 254, 527
GlaI	GCGC	2 cut(s)	445, 694
GluI	GCNGC	6 cut(s)	159, 162, 258, 328, 342, 672
GsuI	CTGGAG	2 cut(s)	91, 729
HaeII	RGCGCY	2 cut(s)	447, 696
HaeIII	GGCC	1 cut(s)	327
HhaI	GCGC	2 cut(s)	446, 695
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	203, 420, 499, 805
Hin6I	GCGC	2 cut(s)	444, 693
HinP1I	GCGC	2 cut(s)	444, 693
HincII	GTYRAC	4 cut(s)	21, 106, 205, 688
HindII	GTYRAC	4 cut(s)	21, 106, 205, 688
HinfI	GANTC	4 cut(s)	26, 206, 622, 711
HphI	GGTGA	4 cut(s)	106, 286, 598, 742
Hpy166II	GTNNAC	8 cut(s)	21, 106, 172, 205, 486, 655, 688, 733
Hpy188I	TCNGA	3 cut(s)	63, 94, 504
Hpy188III	TCNNGA	6 cut(s)	30, 177, 557, 616, 724, 809
Hpy8I	GTNNAC	8 cut(s)	21, 106, 172, 205, 486, 655, 688, 733
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	2 cut(s)	622, 829
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	172, 240, 344, 350, 378, 481, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 347
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	203, 420, 499, 805
HspAI	GCGC	2 cut(s)	444, 693
KasI	GGCGCC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	760
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	3 cut(s)	145, 269, 328
MaeI	CTAG	4 cut(s)	210, 234, 254, 527
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	112, 424, 514
MalI	GATC	7 cut(s)	246, 506, 531, 633, 720, 762, 843
MboI	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
MboII	GAAGA	2 cut(s)	593, 631
MflI	RGATCY	2 cut(s)	504, 529
MhlI	GDGCHC	2 cut(s)	174, 217
MluCI	AATT	6 cut(s)	88, 138, 351, 388, 604, 700
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	3 cut(s)	200, 631, 720
MmeI	TCCRAC	2 cut(s)	436, 627
MnlI	CCTC	7 cut(s)	42, 45, 68, 144, 289, 577, 643
MseI	TTAA	2 cut(s)	594, 753
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	330
MspCI	CTTAAG	1 cut(s)	752
MspR9I	CCNGG	2 cut(s)	70, 272
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	2 cut(s)	70, 272
MvnI	CGCG	2 cut(s)	330, 717
MwoI	GCNNNNNNNGC	2 cut(s)	11, 347
NarI	GGCGCC	1 cut(s)	444
NdeII	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
NlaIII	CATG	4 cut(s)	203, 420, 499, 805
NlaIV	GGNNCC	4 cut(s)	79, 132, 216, 445
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	112, 424, 514
NspI	RCATGY	2 cut(s)	420, 499
NspV	TTCGAA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	6 cut(s)	160, 163, 259, 329, 343, 673
PleI	GAGTC	3 cut(s)	200, 630, 719
PluTI	GGCGCC	1 cut(s)	447
PpsI	GAGTC	3 cut(s)	200, 630, 719
PpuMI	RGGWCCY	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	710
PsiI	TTATAA	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	68, 270
PspEI	GGTNACC	1 cut(s)	112
PspGI	CCWGG	2 cut(s)	68, 270
PspN4I	GGNNCC	4 cut(s)	79, 132, 216, 445
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	504, 529
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	334, 386
RsaNI	GTAC	2 cut(s)	333, 385
RseI	CAYNNNNRTG	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	594, 753
SatI	GCNGC	6 cut(s)	159, 162, 258, 328, 342, 672
Sau3AI	GATC	7 cut(s)	244, 504, 529, 631, 718, 760, 841
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	3 cut(s)	200, 631, 720
ScrFI	CCNGG	2 cut(s)	70, 272
SduI	GDGCHC	2 cut(s)	174, 217
SetI	ASST	6 cut(s)	12, 114, 252, 588, 654, 771
SfoI	GGCGCC	1 cut(s)	445
Sfr303I	CCGCGG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	331
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	6 cut(s)	88, 138, 351, 388, 604, 700
SsiI	CCGC	7 cut(s)	14, 162, 328, 330, 511, 671, 715
SspDI	GGCGCC	1 cut(s)	443
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	4 cut(s)	210, 234, 254, 527
StyD4I	CCNGG	2 cut(s)	68, 270
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	749
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	4 cut(s)	105, 303, 704, 849
TasI	AATT	6 cut(s)	88, 138, 351, 388, 604, 700
TauI	GCSGC	3 cut(s)	164, 330, 674
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	594, 753
Tru9I	TTAA	2 cut(s)	594, 753
TseFI	GTSAC	3 cut(s)	112, 424, 514
TseI	GCWGC	3 cut(s)	158, 257, 341
Tsp45I	GTSAC	3 cut(s)	112, 424, 514
TspDTI	ATGAA	5 cut(s)	294, 477, 537, 790, 848
Tth111I	GACNNNGTC	1 cut(s)	110
Vha464I	CTTAAG	1 cut(s)	752
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	2 cut(s)	88, 138
XceI	RCATGY	2 cut(s)	420, 499
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	4 cut(s)	210, 234, 254, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.