Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016264

Physical Location & Seq

Genomic Coordinates Forward (+)

16962007 .. 16976626

Gene Structure 14620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTTTCAGATCTTGCGGGTCACAAGTGAAGCAGATCCAGTGACTAATTCGGAGCCTTCTCGGGGATATGAACATATTGGAGTAGAGGTGAAAATTAACACAGTCAATTCGCCCTACTTGAAGAATCCAATAGATACCGTACATGAGTTGGAGGTTTATTTGCATGGGGTTGCAGCACATCCAGGGACAACTGTGGCATTGGAAGATATCCGCCGTACAGTGATGGTGAACAAAACATTGGACGGTCTTAAGGATGATGAAACTATAGTTCCCCCCATCCGGATTTTAAATAAGTTCATGGCTCAAGATGAGAGAGGAGCCTGGGAGCTGAAGGATGTTCCCGTTGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

4.88

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22960 FvH4_2g22990
rosa_chinensis	RchiOBHm_Chr6g0289981
rosa_laevigata	RLG00000012253 RLG00000012254 RLG00000012255
rosa_multiflora	Rmu_sc0002902.1_g000066 Rmu_sc0003927.1_g000011
rosa_roxburghii	Rroxscaffold_7G00177450
rosa_rugosa	Rorug06G0208200
rosa_samantha	Rh6AG319600 Rh6BG326700 Rh6CG332500 Rh6DG318400
rosa_wichuraiana	Rw6G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	279
AciI	CCGC	2 cut(s)	16, 211
AclWI	GGATC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	141, 217
AfiI	CCNNNNNNNGG	2 cut(s)	62, 279
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	181, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
AlwI	GGATC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	100, 238
AvaI	CYCGRG	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	2 cut(s)	217, 284
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	183, 322
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	183, 322
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	54, 319
BmrFI	CCNGG	2 cut(s)	183, 322
BpuEI	CTTGAG	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	182, 321
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 279
Bse1I	ACTGG	1 cut(s)	38
BseAI	TCCGGA	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	183, 322
BseDI	CCNNGG	2 cut(s)	182, 321
BseGI	GGATG	4 cut(s)	178, 259, 276, 340
BseLI	CCNNNNNNNGG	2 cut(s)	62, 279
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	62, 279
BsmFI	GGGAC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	9, 34
BspACI	CCGC	2 cut(s)	16, 211
BspEI	TCCGGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	54, 319
BspPI	GGATC	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	182, 321
BssMI	GATC	2 cut(s)	9, 34
Bst2UI	CCWGG	2 cut(s)	183, 322
Bst4CI	ACNGT	5 cut(s)	103, 139, 193, 220, 245
BstAFI	CTTAAG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	178, 259, 276, 340
BstKTI	GATC	2 cut(s)	12, 37
BstMBI	GATC	2 cut(s)	9, 34
BstNI	CCWGG	2 cut(s)	183, 322
BstSCI	CCNGG	2 cut(s)	181, 320
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	9, 34
BstYI	RGATCY	2 cut(s)	9, 34
BtsCI	GGATG	4 cut(s)	178, 259, 276, 340
BtsIMutI	CAGTG	2 cut(s)	45, 225
Csp6I	GTAC	2 cut(s)	140, 216
CviAII	CATG	3 cut(s)	143, 164, 298
CviJI	RGCY	4 cut(s)	55, 302, 320, 328
CviKI_1	RGCY	4 cut(s)	55, 302, 320, 328
CviQI	GTAC	2 cut(s)	140, 216
DpnI	GATC	2 cut(s)	11, 36
DpnII	GATC	2 cut(s)	9, 34
DraI	TTTAAA	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	181, 320
EcoRV	GATATC	1 cut(s)	208
FaeI	CATG	3 cut(s)	146, 167, 301
FaiI	YATR	6 cut(s)	69, 75, 144, 165, 266, 299
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	142, 163, 297
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	4 cut(s)	165, 263, 266, 347
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	3 cut(s)	146, 167, 301
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	100, 238
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	9, 52
Hpy188III	TCNNGA	2 cut(s)	280, 305
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	66, 325
HpyCH4III	ACNGT	5 cut(s)	103, 139, 193, 220, 245
HpyCH4V	TGCA	2 cut(s)	163, 173
Hsp92II	CATG	3 cut(s)	146, 167, 301
Kpn2I	TCCGGA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	9, 34
LmnI	GCTCC	3 cut(s)	52, 317, 325
LpnPI	CCDG	6 cut(s)	51, 168, 195, 293, 307, 334
Lsp1109I	GCAGC	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	19, 40
MalI	GATC	2 cut(s)	11, 36
MboI	GATC	2 cut(s)	9, 34
MboII	GAAGA	2 cut(s)	133, 215
MflI	RGATCY	2 cut(s)	9, 34
MluCI	AATT	3 cut(s)	46, 93, 106
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	79, 145, 308
MroI	TCCGGA	1 cut(s)	279
MseI	TTAA	3 cut(s)	96, 249, 287
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	183, 322
MvaI	CCWGG	2 cut(s)	183, 322
NdeII	GATC	2 cut(s)	9, 34
NlaIII	CATG	3 cut(s)	146, 167, 301
NlaIV	GGNNCC	2 cut(s)	54, 319
NmuCI	GTSAC	2 cut(s)	19, 40
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	181, 320
PspGI	CCWGG	2 cut(s)	181, 320
PspN4I	GGNNCC	2 cut(s)	54, 319
PsuI	RGATCY	2 cut(s)	9, 34
RsaI	GTAC	2 cut(s)	141, 217
RsaNI	GTAC	2 cut(s)	140, 216
SaqAI	TTAA	3 cut(s)	96, 249, 287
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	9, 34
ScrFI	CCNGG	2 cut(s)	183, 322
SetI	ASST	3 cut(s)	90, 156, 330
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	248, 303
SmoI	CTYRAG	2 cut(s)	248, 303
Sse9I	AATT	3 cut(s)	46, 93, 106
SsiI	CCGC	2 cut(s)	16, 211
StyD4I	CCNGG	2 cut(s)	181, 320
TaaI	ACNGT	5 cut(s)	103, 139, 193, 220, 245
TasI	AATT	3 cut(s)	46, 93, 106
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	96, 249, 287
Tru9I	TTAA	3 cut(s)	96, 249, 287
TscAI	CASTG	2 cut(s)	45, 225
TseFI	GTSAC	2 cut(s)	19, 40
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	2 cut(s)	19, 40
TspDTI	ATGAA	3 cut(s)	84, 273, 286
TspRI	CASTG	2 cut(s)	45, 225
Vha464I	CTTAAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.