Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016264

Physical Location & Seq

Genomic Coordinates Reverse (-)

51943023 .. 51945821

Gene Structure 2799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG319600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCATTTATTCGATAAAGTGGGATTGGTGAAAGGCAATTATCGACCCACATACATAGTGGAGAAATATGTGTATGGAGCGCCAAAACTGCGATCTCGTCCATCCTACCTGTTGGCTTACATTGCGGTGTCAGACAATGAAGGAACTAAAGCCTTGGGGAGGAGGGACATTCTGATTGCTTGGAGAGGAACCAAGTTGGAGGCTGAAGTTGCTGTCGACAAAAACACCGAACTACGCCCGGCTCCTAAAATTGTTGGAAACCAGTATGCTGGCGCTATGGTGCACGGTGGTTGGTATGATTATTACACTCATGCTGACGTTAGGACCCCCAAGAACCAACGTACTAGTTGCCAAGATCAGGTTGGAGAGGCCGTTAGAAAACTGATAGATCAATACGGTAACGAGGGTCAAGAACTCAGCATTACTATAACTGGCCGCGGCACTGGTACTGCATTTGCAATTTTAAATGGGATGGATATTGTTTGCAACAAACTCAATTATCCTACAAAACAACCCAAGAGCCCATGTCTGGTCACGGCGATTGTCTTTGGCTGTCCCTTTGTTGGAAACGAAGCCTTTAAGAATGCGGAGAACGATGAGAGCATGTTTCAGATCTTGCGGGTCACAAATGAACCAGATCCAGTGACTAATTCGGAGCCTTCTCCGGAATATGAACATATTGGAGTAGAGGTGAAAATTAACACAGTCAATTCGCCCTACTTGAAGAATCCAATAGATACCGTACATGAGTTGGAGCCTTGGAGGTTTACTTGCATGCGGTTGCAGCGCACCCAGGGACAACTGTGGCATTGGAAGATATCCACCGTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

277

Amino Acids

31.24

Weight (kDa)

8.17

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	59 - 218	1.9e-21	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22960 FvH4_2g22990
rosa_chinensis	RchiOBHm_Chr6g0289981
rosa_laevigata	RLG00000012253 RLG00000012254 RLG00000012255
rosa_multiflora	Rmu_sc0002902.1_g000066 Rmu_sc0003927.1_g000011
rosa_roxburghii	Rroxscaffold_7G00177450
rosa_rugosa	Rorug06G0208200
rosa_samantha	Rh6AG319600 Rh6BG326700 Rh6CG332500 Rh6DG318400
rosa_wichuraiana	Rw6G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	6 cut(s)	125, 436, 438, 587, 619, 778
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	343, 448, 744, 828
AfiI	CCNNNNNNNGG	4 cut(s)	159, 358, 529, 563
AgsI	TTSAA	1 cut(s)	724
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	792
Alw21I	GWGCWC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	632
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	2 cut(s)	369, 433
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	784
AspLEI	GCGC	3 cut(s)	82, 275, 789
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	40, 703
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	2 cut(s)	109, 466
BceAI	ACGGC	2 cut(s)	356, 552
BciT130I	CCWGG	1 cut(s)	794
BcnI	CCSGG	1 cut(s)	239
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	1 cut(s)	345
BfoI	RGCGCY	2 cut(s)	83, 276
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	3 cut(s)	436, 439, 785
BlsI	GCNGC	3 cut(s)	437, 440, 786
Bme1390I	CCNGG	2 cut(s)	239, 794
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	5 cut(s)	190, 243, 326, 657, 756
BmrFI	CCNGG	2 cut(s)	239, 794
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	5 cut(s)	153, 436, 758, 792, 793
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 675, 705
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 358, 529, 563
Bse1I	ACTGG	4 cut(s)	262, 436, 448, 641
Bse3DI	GCAATG	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	794
BseDI	CCNNGG	5 cut(s)	153, 436, 758, 792, 793
BseGI	GGATG	2 cut(s)	101, 477
BseLI	CCNNNNNNNGG	4 cut(s)	159, 358, 529, 563
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	4 cut(s)	262, 436, 448, 641
BseRI	GAGGAG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	796
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	371, 435
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	239, 665
BslFI	GGGAC	3 cut(s)	179, 540, 810
BslI	CCNNNNNNNGG	4 cut(s)	159, 358, 529, 563
BsmFI	GGGAC	3 cut(s)	179, 540, 810
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	371, 435
Bsp1286I	GDGCHC	2 cut(s)	285, 524
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	5 cut(s)	92, 355, 388, 612, 637
BspACI	CCGC	6 cut(s)	125, 436, 438, 587, 619, 778
BspANI	GGCC	2 cut(s)	371, 435
BspCNI	CTCAG	1 cut(s)	429
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	5 cut(s)	190, 243, 326, 657, 756
BspPI	GGATC	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	4 cut(s)	262, 436, 448, 641
BssECI	CCNNGG	5 cut(s)	153, 436, 758, 792, 793
BssMI	GATC	5 cut(s)	92, 355, 388, 612, 637
BssT1I	CCWWGG	2 cut(s)	153, 758
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	7 cut(s)	287, 398, 706, 742, 804, 826, 831
BstC8I	GCNNGC	2 cut(s)	271, 776
BstDEI	CTNAG	1 cut(s)	416
BstDSI	CCRYGG	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	101, 477
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	2 cut(s)	83, 276
BstHHI	GCGC	3 cut(s)	82, 275, 789
BstKTI	GATC	5 cut(s)	95, 358, 391, 615, 640
BstMBI	GATC	5 cut(s)	92, 355, 388, 612, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 122, 209, 784
BstNI	CCWGG	1 cut(s)	794
BstNSI	RCATGY	2 cut(s)	607, 778
BstSCI	CCNGG	2 cut(s)	237, 792
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	796
BstX2I	RGATCY	2 cut(s)	612, 637
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	2 cut(s)	612, 637
BsuRI	GGCC	2 cut(s)	371, 435
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	101, 477
BtsIMutI	CAGTG	2 cut(s)	441, 648
Cac8I	GCNNGC	2 cut(s)	271, 776
CfoI	GCGC	3 cut(s)	82, 275, 789
Cfr13I	GGNCC	1 cut(s)	324
Cfr42I	CCGCGG	1 cut(s)	439
Csp6I	GTAC	4 cut(s)	342, 447, 743, 827
CviAII	CATG	5 cut(s)	311, 525, 604, 746, 775
CviQI	GTAC	4 cut(s)	342, 447, 743, 827
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	5 cut(s)	94, 357, 390, 614, 639
DpnII	GATC	5 cut(s)	92, 355, 388, 612, 637
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	153, 758
Eco24I	GRGCYC	1 cut(s)	524
Eco32I	GATATC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	792
EcoRV	GATATC	1 cut(s)	819
EcoT14I	CCWWGG	2 cut(s)	153, 758
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	2 cut(s)	153, 758
FaeI	CATG	5 cut(s)	314, 528, 607, 749, 778
FaqI	GGGAC	3 cut(s)	179, 540, 810
FatI	CATG	5 cut(s)	310, 524, 603, 745, 774
FauI	CCCGC	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	436, 439, 785
FokI	GGATG	2 cut(s)	88, 484
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	3 cut(s)	436, 439, 785
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	3 cut(s)	81, 274, 788
GluI	GCNGC	3 cut(s)	436, 439, 785
HaeII	RGCGCY	2 cut(s)	83, 276
HaeIII	GGCC	2 cut(s)	371, 435
HapII	CCGG	2 cut(s)	239, 665
HhaI	GCGC	3 cut(s)	82, 275, 789
Hin1II	CATG	5 cut(s)	314, 528, 607, 749, 778
Hin6I	GCGC	3 cut(s)	80, 273, 787
HinP1I	GCGC	3 cut(s)	80, 273, 787
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	727
HpaII	CCGG	2 cut(s)	239, 665
HphI	GGTGA	2 cut(s)	40, 703
Hpy166II	GTNNAC	3 cut(s)	217, 283, 768
Hpy188I	TCNGA	4 cut(s)	133, 174, 612, 655
Hpy188III	TCNNGA	2 cut(s)	410, 665
Hpy8I	GTNNAC	3 cut(s)	217, 283, 768
HpyAV	CCTTC	2 cut(s)	134, 669
HpyCH4III	ACNGT	7 cut(s)	287, 398, 706, 742, 804, 826, 831
HpyCH4IV	ACGT	2 cut(s)	318, 340
HpyCH4V	TGCA	7 cut(s)	4, 283, 452, 458, 486, 774, 784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 122, 209, 784
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	2 cut(s)	318, 340
Hsp92II	CATG	5 cut(s)	314, 528, 607, 749, 778
HspAI	GCGC	3 cut(s)	80, 273, 787
Kpn2I	TCCGGA	1 cut(s)	664
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	92, 355, 388, 612, 637
LmnI	GCTCC	4 cut(s)	77, 247, 655, 754
Lsp1109I	GCAGC	1 cut(s)	796
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	318, 340
MaeIII	GTNAC	4 cut(s)	398, 532, 622, 643
MalI	GATC	5 cut(s)	94, 357, 390, 614, 639
MboI	GATC	5 cut(s)	92, 355, 388, 612, 637
MboII	GAAGA	2 cut(s)	736, 826
MflI	RGATCY	2 cut(s)	612, 637
MhlI	GDGCHC	2 cut(s)	285, 524
MluCI	AATT	7 cut(s)	37, 249, 459, 496, 649, 696, 709
MmeI	TCCRAC	5 cut(s)	177, 235, 343, 544, 732
MnlI	CCTC	8 cut(s)	153, 156, 179, 193, 361, 397, 682, 756
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	664
MseI	TTAA	3 cut(s)	464, 579, 699
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	2 cut(s)	239, 665
MspR9I	CCNGG	2 cut(s)	239, 794
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	794
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	88, 122, 209, 784
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	5 cut(s)	92, 355, 388, 612, 637
NlaIII	CATG	5 cut(s)	314, 528, 607, 749, 778
NlaIV	GGNNCC	5 cut(s)	190, 243, 326, 657, 756
NmuCI	GTSAC	3 cut(s)	532, 622, 643
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	607, 778
PaeI	GCATGC	1 cut(s)	778
PasI	CCCWGGG	1 cut(s)	793
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	727
PkrI	GCNGC	3 cut(s)	437, 440, 786
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	792
PspGI	CCWGG	1 cut(s)	792
PspN4I	GGNNCC	5 cut(s)	190, 243, 326, 657, 756
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	612, 637
RsaI	GTAC	4 cut(s)	343, 448, 744, 828
RsaNI	GTAC	4 cut(s)	342, 447, 743, 827
RseI	CAYNNNNRTG	1 cut(s)	125
SacII	CCGCGG	1 cut(s)	439
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	464, 579, 699
SatI	GCNGC	3 cut(s)	436, 439, 785
Sau3AI	GATC	5 cut(s)	92, 355, 388, 612, 637
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	239, 794
SduI	GDGCHC	2 cut(s)	285, 524
SetI	ASST	6 cut(s)	111, 321, 343, 363, 693, 767
Sfr303I	CCGCGG	1 cut(s)	439
SgrBI	CCGCGG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	125
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	778
Sse9I	AATT	7 cut(s)	37, 249, 459, 496, 649, 696, 709
SsiI	CCGC	6 cut(s)	125, 436, 438, 587, 619, 778
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	237, 792
StyI	CCWWGG	2 cut(s)	153, 758
TaaI	ACNGT	7 cut(s)	287, 398, 706, 742, 804, 826, 831
TaiI	ACGT	2 cut(s)	321, 343
TaqI	TCGA	3 cut(s)	12, 43, 216
TasI	AATT	7 cut(s)	37, 249, 459, 496, 649, 696, 709
TauI	GCSGC	2 cut(s)	438, 441
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	3 cut(s)	464, 579, 699
Tru9I	TTAA	3 cut(s)	464, 579, 699
TscAI	CASTG	2 cut(s)	448, 648
TseFI	GTSAC	3 cut(s)	532, 622, 643
TseI	GCWGC	1 cut(s)	784
Tsp45I	GTSAC	3 cut(s)	532, 622, 643
TspDTI	ATGAA	3 cut(s)	153, 645, 687
TspRI	CASTG	2 cut(s)	448, 648
VneI	GTGCAC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	157
XceI	RCATGY	2 cut(s)	607, 778
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 359
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.