Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016264

Physical Location & Seq

Genomic Coordinates Reverse (-)

51452793 .. 51457425

Gene Structure 4633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGACTGACTTTTCCAAAAACTGGGAAAAACTGTCTGGTGACAATCTCTGGAGTGATCTAAAAGATCCTCTCCACGTCGATCTCCGCCGCTATATCATTCATTACGGTGAAAGGGCTGGAGCTATTGACGATGTCTTCATTGATGGCAAGCTCGTTTCCCCGATAAATCCCAAGTCCATCGGATATCCTAGATATAAATATGTGTATGGAGCGCCAAAACTGCGATCTCGCCCATCCTACCTGTTGGCTTACATTGCGGTGTCAGACAATGAAGGAACTAAAGCCTTGGGGAGGAGGGACATTCTGATTGCTTGGAGAGGAACCAAGTTGGAGGCTGAAGTTGCTGTCGACAAAAACACCGAACTACGCCCGGCTCCTAAAATTGTTGGAAACCAGTATGCTGGCGCTACGGTGCACGGTGGTTGGTATGATTATTACACTCATGCTGACGTTAGGACCCCCAAGAACCAACGTACTAGTTGCCAAGATCAGGTTGGAGAGGCCGTTAGAAAACTGATAGATCAATACGGTAACGAGGGTCAAGAACTCAGCATTACTATAACTGGCCGCGGCACTGGTACTGCATTTGCAATTTTAAATGGGATGGATATTGTTTGCAACAAACTCAATTATCCTACAAAACAACCCAAGAGCCCATGTCTGGTCACGGCGATTGTCTTTGGCTGTCCCTTTGTTGGAAACGAAGCCTTTAAGAATGCGGAGAACGATGAGAGCATGTTTCAGATCTTGCGGGTCACAAATGAACCAGATCCAGTGACTAATTCGGAGCCTTCTCCGGAATATGAACATATTGGAGTAGAGGTGAAAATTAACACAGTCAATTCGCCCTACTTGAAGAATCCAATAGATACCGTACATGAGTTGGAGCCTTGGAGGTTTACTTGCATGCGGTTGCAGCGCACCCAGGGACAACTGTGGCATTGGAAGATATCCACCATTTTAAATAAGTTCATGGTTCAAAATGAGAGAGGCGCCTGGGAGCTGAAGGATGTTCCCGTTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

342

Amino Acids

38.7

Weight (kDa)

6.67

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	103 - 262	2.4e-21	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22960 FvH4_2g22990
rosa_chinensis	RchiOBHm_Chr6g0289981
rosa_laevigata	RLG00000012253 RLG00000012254 RLG00000012255
rosa_multiflora	Rmu_sc0002902.1_g000066 Rmu_sc0003927.1_g000011
rosa_roxburghii	Rroxscaffold_7G00177450
rosa_rugosa	Rorug06G0208200
rosa_samantha	Rh6AG319600 Rh6BG326700 Rh6CG332500 Rh6DG318400
rosa_wichuraiana	Rw6G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	992
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	570
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	8 cut(s)	85, 88, 257, 568, 570, 719, 751, 910
AclWI	GGATC	2 cut(s)	59, 764
AcoI	YGGCCR	1 cut(s)	565
AcuI	CTGAAG	2 cut(s)	357, 1025
AcyI	GRCGYC	1 cut(s)	993
AfaI	GTAC	3 cut(s)	475, 580, 876
AfiI	CCNNNNNNNGG	5 cut(s)	21, 291, 490, 661, 695
AgsI	TTSAA	2 cut(s)	856, 980
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	924, 995
AluBI	AGCT	3 cut(s)	122, 151, 1003
AluI	AGCT	3 cut(s)	122, 151, 1003
Alw21I	GWGCWC	1 cut(s)	417
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	59, 764
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	2 cut(s)	501, 565
ApaLI	GTGCAC	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	916
AspLEI	GCGC	4 cut(s)	214, 407, 921, 995
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	50, 119, 835
AvaII	GGWCC	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	928
BccI	CCATC	4 cut(s)	137, 185, 241, 598
BceAI	ACGGC	2 cut(s)	488, 684
BciT130I	CCWGG	2 cut(s)	926, 997
BcnI	CCSGG	1 cut(s)	371
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	189, 477
BfoI	RGCGCY	3 cut(s)	215, 408, 996
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	4 cut(s)	88, 568, 571, 917
BlsI	GCNGC	4 cut(s)	89, 569, 572, 918
Bme1390I	CCNGG	3 cut(s)	371, 926, 997
Bme18I	GGWCC	1 cut(s)	456
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	6 cut(s)	322, 375, 458, 789, 888, 994
BmrFI	CCNGG	3 cut(s)	371, 926, 997
BmrI	ACTGGG	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	127
BpmI	CTGGAG	2 cut(s)	70, 138
BpuMI	CCSGG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	993
BsaJI	CCNNGG	6 cut(s)	285, 568, 890, 924, 925, 996
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 807, 837
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 291, 490, 661, 695
Bse1I	ACTGG	5 cut(s)	26, 394, 568, 580, 773
Bse3DI	GCAATG	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	2 cut(s)	926, 997
BseDI	CCNNGG	6 cut(s)	285, 568, 890, 924, 925, 996
BseGI	GGATG	3 cut(s)	233, 609, 1015
BseLI	CCNNNNNNNGG	5 cut(s)	21, 291, 490, 661, 695
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	562
BseNI	ACTGG	5 cut(s)	26, 394, 568, 580, 773
BseRI	GAGGAG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	928
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	503, 567
BshNI	GGYRCC	1 cut(s)	992
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	371, 797
BslFI	GGGAC	3 cut(s)	311, 672, 942
BslI	CCNNNNNNNGG	5 cut(s)	21, 291, 490, 661, 695
BsmFI	GGGAC	3 cut(s)	311, 672, 942
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	503, 567
Bsp1286I	GDGCHC	2 cut(s)	417, 656
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
BspACI	CCGC	8 cut(s)	85, 88, 257, 568, 570, 719, 751, 910
BspANI	GGCC	2 cut(s)	503, 567
BspCNI	CTCAG	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	6 cut(s)	322, 375, 458, 789, 888, 994
BspPI	GGATC	2 cut(s)	59, 764
BspT107I	GGYRCC	1 cut(s)	992
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	5 cut(s)	26, 394, 568, 580, 773
BssECI	CCNNGG	6 cut(s)	285, 568, 890, 924, 925, 996
BssMI	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
BssNI	GRCGYC	1 cut(s)	993
BssT1I	CCWWGG	2 cut(s)	285, 890
Bst2UI	CCWGG	2 cut(s)	926, 997
Bst4CI	ACNGT	8 cut(s)	33, 107, 412, 419, 530, 838, 874, 936
BstACI	GRCGYC	1 cut(s)	993
BstC8I	GCNNGC	3 cut(s)	149, 403, 908
BstDEI	CTNAG	1 cut(s)	548
BstDSI	CCRYGG	1 cut(s)	568
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	233, 609, 1015
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	3 cut(s)	215, 408, 996
BstHHI	GCGC	4 cut(s)	214, 407, 921, 995
BstKTI	GATC	8 cut(s)	58, 67, 82, 227, 490, 523, 747, 772
BstMBI	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 254, 341, 916
BstNI	CCWGG	2 cut(s)	926, 997
BstNSI	RCATGY	2 cut(s)	739, 910
BstSCI	CCNGG	3 cut(s)	369, 924, 995
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	928
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	3 cut(s)	64, 744, 769
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	3 cut(s)	64, 744, 769
BsuRI	GGCC	2 cut(s)	503, 567
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	233, 609, 1015
BtsIMutI	CAGTG	2 cut(s)	573, 780
Cac8I	GCNNGC	3 cut(s)	149, 403, 908
CfoI	GCGC	4 cut(s)	214, 407, 921, 995
Cfr13I	GGNCC	1 cut(s)	456
Cfr42I	CCGCGG	1 cut(s)	571
Csp6I	GTAC	3 cut(s)	474, 579, 875
CviAII	CATG	6 cut(s)	443, 657, 736, 878, 907, 973
CviQI	GTAC	3 cut(s)	474, 579, 875
DdeI	CTNAG	1 cut(s)	548
DinI	GGCGCC	1 cut(s)	994
DpnI	GATC	8 cut(s)	57, 66, 81, 226, 489, 522, 746, 771
DpnII	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
DraI	TTTAAA	2 cut(s)	597, 963
EaeI	YGGCCR	1 cut(s)	565
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	285, 890
Eco24I	GRGCYC	1 cut(s)	656
Eco32I	GATATC	2 cut(s)	185, 951
Eco47I	GGWCC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	357, 1025
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	924, 995
EcoRV	GATATC	2 cut(s)	185, 951
EcoT14I	CCWWGG	2 cut(s)	285, 890
EcoT38I	GRGCYC	1 cut(s)	656
EgeI	GGCGCC	1 cut(s)	994
EheI	GGCGCC	1 cut(s)	994
ErhI	CCWWGG	2 cut(s)	285, 890
FaeI	CATG	6 cut(s)	446, 660, 739, 881, 910, 976
FaqI	GGGAC	3 cut(s)	311, 672, 942
FatI	CATG	6 cut(s)	442, 656, 735, 877, 906, 972
FauI	CCCGC	1 cut(s)	744
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	88, 568, 571, 917
FokI	GGATG	3 cut(s)	220, 616, 1022
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	4 cut(s)	88, 568, 571, 917
FspBI	CTAG	2 cut(s)	189, 477
GlaI	GCGC	4 cut(s)	213, 406, 920, 994
GluI	GCNGC	4 cut(s)	88, 568, 571, 917
GsuI	CTGGAG	2 cut(s)	70, 138
HaeII	RGCGCY	3 cut(s)	215, 408, 996
HaeIII	GGCC	2 cut(s)	503, 567
HapII	CCGG	2 cut(s)	371, 797
HhaI	GCGC	4 cut(s)	214, 407, 921, 995
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	6 cut(s)	446, 660, 739, 881, 910, 976
Hin6I	GCGC	4 cut(s)	212, 405, 919, 993
HinP1I	GCGC	4 cut(s)	212, 405, 919, 993
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	859
HpaII	CCGG	2 cut(s)	371, 797
HphI	GGTGA	3 cut(s)	50, 119, 835
Hpy166II	GTNNAC	3 cut(s)	349, 415, 900
Hpy188I	TCNGA	5 cut(s)	182, 265, 306, 744, 787
Hpy188III	TCNNGA	3 cut(s)	49, 542, 797
Hpy8I	GTNNAC	3 cut(s)	349, 415, 900
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	266, 801, 1000
HpyCH4III	ACNGT	8 cut(s)	33, 107, 412, 419, 530, 838, 874, 936
HpyCH4IV	ACGT	3 cut(s)	75, 450, 472
HpyCH4V	TGCA	6 cut(s)	415, 584, 590, 618, 906, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 254, 341, 916
HpyF3I	CTNAG	1 cut(s)	548
HpySE526I	ACGT	3 cut(s)	75, 450, 472
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	6 cut(s)	446, 660, 739, 881, 910, 976
HspAI	GCGC	4 cut(s)	212, 405, 919, 993
KasI	GGCGCC	1 cut(s)	992
Kpn2I	TCCGGA	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
LmnI	GCTCC	6 cut(s)	119, 209, 379, 787, 886, 1000
Lsp1109I	GCAGC	1 cut(s)	928
MaeI	CTAG	2 cut(s)	189, 477
MaeII	ACGT	3 cut(s)	75, 450, 472
MaeIII	GTNAC	5 cut(s)	38, 530, 664, 754, 775
MalI	GATC	8 cut(s)	57, 66, 81, 226, 489, 522, 746, 771
MboI	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
MboII	GAAGA	3 cut(s)	127, 868, 958
MflI	RGATCY	3 cut(s)	64, 744, 769
MhlI	GDGCHC	2 cut(s)	417, 656
MluCI	AATT	6 cut(s)	381, 591, 628, 781, 828, 841
Mly113I	GGCGCC	1 cut(s)	993
MmeI	TCCRAC	5 cut(s)	309, 367, 475, 676, 864
MroI	TCCGGA	1 cut(s)	796
MseI	TTAA	4 cut(s)	596, 711, 831, 962
MslI	CAYNNNNRTG	2 cut(s)	105, 257
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	2 cut(s)	371, 797
MspR9I	CCNGG	3 cut(s)	371, 926, 997
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	2 cut(s)	926, 997
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	4 cut(s)	220, 254, 341, 916
NarI	GGCGCC	1 cut(s)	993
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
NlaIII	CATG	6 cut(s)	446, 660, 739, 881, 910, 976
NlaIV	GGNNCC	6 cut(s)	322, 375, 458, 789, 888, 994
NmuCI	GTSAC	4 cut(s)	38, 664, 754, 775
NspI	RCATGY	2 cut(s)	739, 910
PaeI	GCATGC	1 cut(s)	910
PasI	CCCWGGG	1 cut(s)	925
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	859
PflFI	GACNNNGTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	21
PkrI	GCNGC	4 cut(s)	89, 569, 572, 918
PluTI	GGCGCC	1 cut(s)	996
PpuMI	RGGWCCY	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	924, 995
PspGI	CCWGG	2 cut(s)	924, 995
PspN4I	GGNNCC	6 cut(s)	322, 375, 458, 789, 888, 994
PspPI	GGNCC	1 cut(s)	456
PspPPI	RGGWCCY	1 cut(s)	456
PsuI	RGATCY	3 cut(s)	64, 744, 769
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	3 cut(s)	475, 580, 876
RsaNI	GTAC	3 cut(s)	474, 579, 875
RseI	CAYNNNNRTG	2 cut(s)	105, 257
SacII	CCGCGG	1 cut(s)	571
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	596, 711, 831, 962
SatI	GCNGC	4 cut(s)	88, 568, 571, 917
Sau3AI	GATC	8 cut(s)	55, 64, 79, 224, 487, 520, 744, 769
Sau96I	GGNCC	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	371, 926, 997
SduI	GDGCHC	2 cut(s)	417, 656
SfoI	GGCGCC	1 cut(s)	994
Sfr303I	CCGCGG	1 cut(s)	571
SgrBI	CCGCGG	1 cut(s)	571
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	105, 257
SpeI	ACTAGT	1 cut(s)	476
SphI	GCATGC	1 cut(s)	910
Sse9I	AATT	6 cut(s)	381, 591, 628, 781, 828, 841
SsiI	CCGC	8 cut(s)	85, 88, 257, 568, 570, 719, 751, 910
SspDI	GGCGCC	1 cut(s)	992
SspMI	CTAG	2 cut(s)	189, 477
StyD4I	CCNGG	3 cut(s)	369, 924, 995
StyI	CCWWGG	2 cut(s)	285, 890
TaaI	ACNGT	8 cut(s)	33, 107, 412, 419, 530, 838, 874, 936
TaiI	ACGT	3 cut(s)	78, 453, 475
TaqI	TCGA	2 cut(s)	78, 348
TasI	AATT	6 cut(s)	381, 591, 628, 781, 828, 841
TauI	GCSGC	3 cut(s)	90, 570, 573
TfiI	GAWTC	1 cut(s)	859
Tru1I	TTAA	4 cut(s)	596, 711, 831, 962
Tru9I	TTAA	4 cut(s)	596, 711, 831, 962
TscAI	CASTG	2 cut(s)	580, 780
TseFI	GTSAC	4 cut(s)	38, 664, 754, 775
TseI	GCWGC	1 cut(s)	916
Tsp45I	GTSAC	4 cut(s)	38, 664, 754, 775
TspDTI	ATGAA	6 cut(s)	89, 127, 285, 777, 819, 961
TspRI	CASTG	2 cut(s)	580, 780
Tth111I	GACNNNGTC	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	21
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	456
XagI	CCTNNNNNAGG	1 cut(s)	289
XceI	RCATGY	2 cut(s)	739, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	2 cut(s)	189, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.