Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016264

Physical Location & Seq

Genomic Coordinates Reverse (-)

18861503 .. 18863302

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCAAGCTCATTGCCGCGAAAAAAACCCCAGTTCGTCGGTCTTCCCCGATATGGAAAGGCAAATTTATTCGAGGAGGTGGGATTGGTGAAAGGCAATCCATACTCGTACGACGTCAAGAACTATGTGTATGGATCACCAAAACTGCCACATCGCACATCCAACTTGATGGCTTACGTTGCGGTGTCAACCGATTCAGGAAGCATAGCCTTGGGGAGGAGGGACATTCTGATTGCCTGGAGAGGAACCAAGTTGAATTCTGAACTTGATGTCGACAAGGTCACCAAACTACGCTCGGCTCCTCAAATTTTTGGACACGAGAATGCTGCCGCTATGGTGCACTCTGGATGGTTTGATTATTACACCCATGTTGACTCTAGGGCACCCAAGAACAAAACTACTAGTTGCAGAGATCAGGTCCTAGCAGCAGTTAGAACCCTGGTGAATGAATACGCTGAAAAGGAGGATTTCGAACTCAGCATTACTATAACTGGCCGCGGTACTGGTGCTGCATTTGCAATTTTTAGTGGGATGGATATTGTCTGCAACTCGTACAATTCTCCTACGACTGATACCGAAAAGGCATGTCTGGTCACGGCGATTGTCTTTGCGCCCCCCGTGTTGGAAATGAAGCCTTTGCGACATTGCAGTCCACACAGGACATGCTTCAGATCTTGCGGGTCACAAATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

232

Amino Acids

25.51

Weight (kDa)

9.1

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	78 - 207	3.4e-11	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22960 FvH4_2g22990
rosa_chinensis	RchiOBHm_Chr6g0289981
rosa_laevigata	RLG00000012253 RLG00000012254 RLG00000012255
rosa_multiflora	Rmu_sc0002902.1_g000066 Rmu_sc0003927.1_g000011
rosa_roxburghii	Rroxscaffold_7G00177450
rosa_rugosa	Rorug06G0208200
rosa_samantha	Rh6AG319600 Rh6BG326700 Rh6CG332500 Rh6DG318400
rosa_wichuraiana	Rw6G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	648
AatII	GACGTC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	19, 498
AciI	CCGC	6 cut(s)	17, 182, 330, 496, 498, 678
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	3 cut(s)	64, 256, 306
AcuI	CTGAAG	1 cut(s)	652
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	110, 502, 554
AfiI	CCNNNNNNNGG	3 cut(s)	53, 216, 622
AgsI	TTSAA	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	2 cut(s)	236, 438
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	342
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	493
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	326, 425, 509
ApoI	RAATTY	3 cut(s)	64, 256, 306
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	4 cut(s)	100, 129, 274, 454
AsuII	TTCGAA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	2 cut(s)	342, 385
BanI	GGYRCC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	313, 437, 496
BccI	CCATC	3 cut(s)	163, 342, 526
BceAI	ACGGC	1 cut(s)	612
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	238, 440
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	4 cut(s)	378, 402, 422, 694
BglII	AGATCT	1 cut(s)	671
BisI	GCNGC	6 cut(s)	17, 327, 330, 426, 496, 510
BlsI	GCNGC	6 cut(s)	18, 328, 331, 427, 497, 511
Bme1390I	CCNGG	2 cut(s)	238, 440
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	3 cut(s)	247, 300, 384
BmrFI	CCNGG	2 cut(s)	238, 440
BmrI	ACTGGG	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	210, 438, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 216, 622
Bse1I	ACTGG	3 cut(s)	31, 496, 508
Bse3DI	GCAATG	2 cut(s)	11, 643
BseBI	CCWGG	2 cut(s)	238, 440
BseDI	CCNNGG	3 cut(s)	210, 438, 496
BseGI	GGATG	3 cut(s)	158, 353, 537
BseLI	CCNNNNNNNGG	3 cut(s)	53, 216, 622
BseMI	GCAATG	2 cut(s)	11, 643
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	3 cut(s)	31, 496, 508
BseRI	GAGGAG	3 cut(s)	89, 232, 291
BseSI	GKGCMC	2 cut(s)	342, 385
BseXI	GCAGC	3 cut(s)	313, 437, 496
Bsh1236I	CGCG	2 cut(s)	19, 498
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	342
BsiWI	CGTACG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	53, 216, 622
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	342, 385
Bsp143I	GATC	3 cut(s)	134, 412, 671
BspACI	CCGC	6 cut(s)	17, 182, 330, 496, 498, 678
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	489
BspFNI	CGCG	2 cut(s)	19, 498
BspLI	GGNNCC	3 cut(s)	247, 300, 384
BspPI	GGATC	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	11, 643
BsrI	ACTGG	3 cut(s)	31, 496, 508
BssECI	CCNNGG	3 cut(s)	210, 438, 496
BssMI	GATC	3 cut(s)	134, 412, 671
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	238, 440
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	496
BstEII	GGTNACC	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	158, 353, 537
BstFNI	CGCG	2 cut(s)	19, 498
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	3 cut(s)	137, 415, 674
BstMBI	GATC	3 cut(s)	134, 412, 671
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 515
BstNI	CCWGG	2 cut(s)	238, 440
BstNSI	RCATGY	2 cut(s)	588, 666
BstPI	GGTNACC	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	236, 438
BstSLI	GKGCMC	2 cut(s)	342, 385
BstUI	CGCG	2 cut(s)	19, 498
BstV1I	GCAGC	3 cut(s)	313, 437, 496
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	495
BtgI	CCRYGG	1 cut(s)	496
BtgZI	GCGATG	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	158, 353, 537
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	418
Cfr42I	CCGCGG	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	109, 501, 553
CviAII	CATG	3 cut(s)	368, 585, 663
CviJI	RGCY	6 cut(s)	9, 173, 209, 299, 495, 634
CviKI_1	RGCY	6 cut(s)	9, 173, 209, 299, 495, 634
CviQI	GTAC	3 cut(s)	109, 501, 553
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	3 cut(s)	136, 414, 673
DpnII	GATC	3 cut(s)	134, 412, 671
DrdI	GACNNNNNNGTC	1 cut(s)	648
DseDI	GACNNNNNNGTC	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	652
Eco91I	GGTNACC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	236, 438
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	371, 588, 666
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	367, 584, 662
FauI	CCCGC	1 cut(s)	671
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	17, 327, 330, 426, 496, 510
FokI	GGATG	3 cut(s)	145, 360, 544
Fsp4HI	GCNGC	6 cut(s)	17, 327, 330, 426, 496, 510
FspBI	CTAG	4 cut(s)	378, 402, 422, 694
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	6 cut(s)	17, 327, 330, 426, 496, 510
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	613
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	371, 588, 666
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	3 cut(s)	189, 274, 373
HindII	GTYRAC	3 cut(s)	189, 274, 373
HinfI	GANTC	2 cut(s)	194, 374
HphI	GGTGA	4 cut(s)	100, 129, 274, 454
Hpy166II	GTNNAC	5 cut(s)	189, 274, 340, 373, 653
Hpy188I	TCNGA	3 cut(s)	231, 262, 671
Hpy188III	TCNNGA	3 cut(s)	118, 198, 345
Hpy8I	GTNNAC	5 cut(s)	189, 274, 340, 373, 653
Hpy99I	CGWCG	2 cut(s)	41, 116
HpyCH4IV	ACGT	2 cut(s)	114, 177
HpyCH4V	TGCA	6 cut(s)	340, 408, 512, 518, 546, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 515
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	2 cut(s)	114, 177
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	371, 588, 666
HspAI	GCGC	1 cut(s)	611
KspI	CCGCGG	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	134, 412, 671
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	3 cut(s)	313, 437, 496
MaeI	CTAG	4 cut(s)	378, 402, 422, 694
MaeII	ACGT	2 cut(s)	114, 177
MaeIII	GTNAC	3 cut(s)	280, 592, 681
MalI	GATC	3 cut(s)	136, 414, 673
MboI	GATC	3 cut(s)	134, 412, 671
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	2 cut(s)	342, 385
MluCI	AATT	5 cut(s)	64, 256, 306, 519, 556
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	186, 603
MnlI	CCTC	7 cut(s)	67, 70, 210, 213, 236, 312, 457
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	498
MspR9I	CCNGG	2 cut(s)	238, 440
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	238, 440
MvnI	CGCG	2 cut(s)	19, 498
MwoI	GCNNNNNNNGC	2 cut(s)	179, 515
NdeII	GATC	3 cut(s)	134, 412, 671
NlaIII	CATG	3 cut(s)	371, 588, 666
NlaIV	GGNNCC	3 cut(s)	247, 300, 384
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	3 cut(s)	280, 592, 681
NspI	RCATGY	2 cut(s)	588, 666
NspV	TTCGAA	1 cut(s)	471
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	194
Pfl23II	CGTACG	1 cut(s)	108
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	6 cut(s)	18, 328, 331, 427, 497, 511
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	236, 438
PspEI	GGTNACC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	236, 438
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	247, 300, 384
PspPI	GGNCC	1 cut(s)	418
PspPPI	RGGWCCY	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	3 cut(s)	110, 502, 554
RsaNI	GTAC	3 cut(s)	109, 501, 553
RseI	CAYNNNNRTG	1 cut(s)	321
SacII	CCGCGG	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	272
SatI	GCNGC	6 cut(s)	17, 327, 330, 426, 496, 510
Sau3AI	GATC	3 cut(s)	134, 412, 671
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	238, 440
SduI	GDGCHC	2 cut(s)	342, 385
SetI	ASST	6 cut(s)	11, 81, 117, 180, 282, 420
Sfr303I	CCGCGG	1 cut(s)	499
SfuI	TTCGAA	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	321
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	5 cut(s)	64, 256, 306, 519, 556
SsiI	CCGC	6 cut(s)	17, 182, 330, 496, 498, 678
SspMI	CTAG	4 cut(s)	378, 402, 422, 694
StyD4I	CCNGG	2 cut(s)	236, 438
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	117, 180
TaqI	TCGA	3 cut(s)	72, 273, 471
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	64, 256, 306, 519, 556
TauI	GCSGC	3 cut(s)	19, 332, 498
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	3 cut(s)	280, 592, 681
TseI	GCWGC	3 cut(s)	326, 425, 509
Tsp45I	GTSAC	3 cut(s)	280, 592, 681
TspDTI	ATGAA	2 cut(s)	462, 644
Tth111I	GACNNNGTC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	418
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	3 cut(s)	64, 256, 306
XceI	RCATGY	2 cut(s)	588, 666
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	4 cut(s)	378, 402, 422, 694
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.