FvH4_2g23350

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010527
Physical Location & Seq
Forward (+)
19125759 .. 19127544
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23350.t5

Sequence Viewer

Length: 774 bp
ATGGGTCAGGGCCTCAGCGTGGAGATTGATGATGCAGCCAATTTTTGCCTCTGTAAGGTGGATATAAAGCCATGGCTGTTCTCCAAGAGAAAAGGGTGCAGAAATCTGGAGGTTGATTCTAGTAAAATCGACATCTTTTGGGATTTAACCAATGCTAAATTTGGTTCTGGGCCTGAGCCATTAGAGAAGTTTTACCTGGCTGTTATGTTCAACCAAGAAATGGTTCTTCATCTTGGAGATTTGAAAAGAGAGGTTCTTGGTGTCAAAGACCCAATTCATGGTTCCAATGCTGTCTTTGTTGCTAAAAGGGAACACATTTTTGGGAAGAAACTTTATGGTGCGAAGGCTCAGTTCTGTGACAAGGGGAAAACCCATGATGTTACAATTGAGTGTGAGACTGTAGGGCTGAATGAGCCTTACCTTGTGATCTGTGTTGACAGTAAGACTGTGATGAAGGTGAAGAAGCTGAACTGGAAGTTCAGGGGAAATCACACCATTTTGGTTGATGGGTTGAGAATTGAAGTGTTCTGGGATGTGCACAATTGGCTCTTTGGGAATTCTATGGGCGATGCAGTGTTCATGTTCCAAACTTGCCTCAGTAACAATGCTGATAAGCTGTGGAGTACTGGTAATACTACTAGCGAGTCAGTTTTGGATTCATCTTCTGTGTTAACTTGGTCTTCGTCTTCCTCCTCTCGGCAACTGAGAGAGAGCAACAACCAGTTGCAGGGTCTTGGTTTCTCCCTGGTTTTGCATGCTTGGAAGAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

258

Amino Acids

28.95

Weight (kDa)

7.04

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 48 - 330 2.2e-104 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 220, 278
AcsI RAATTY 2 cut(s) 158, 556
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
AgsI TTSAA 3 cut(s) 211, 244, 521
AjnI CCWGG 2 cut(s) 195, 744
AjuI GAANNNNNNNTTGG 6 cut(s) 207, 239, 265, 297, 303, 335
AluBI AGCT 2 cut(s) 466, 616
AluI AGCT 2 cut(s) 466, 616
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 389
Alw44I GTGCAC 1 cut(s) 536
AoxI GGCC 2 cut(s) 10, 170
ApaLI GTGCAC 1 cut(s) 536
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 158, 556
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 10, 170
AsuHPI GGTGA 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 540
BbsI GAAGAC 2 cut(s) 672, 678
Bbv12I GWGCWC 1 cut(s) 540
BbvCI CCTCAGC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 500
BciT130I CCWGG 2 cut(s) 197, 746
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 120, 639
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 197, 746
BmgT120I GGNCC 2 cut(s) 10, 170
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 2 cut(s) 197, 746
BmsI GCATC 2 cut(s) 22, 559
BpiI GAAGAC 2 cut(s) 672, 678
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 2 cut(s) 14, 174
BsaJI CCNNGG 2 cut(s) 71, 744
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
Bse1I ACTGG 3 cut(s) 476, 631, 721
BseBI CCWGG 2 cut(s) 197, 746
BseDI CCNNGG 2 cut(s) 71, 744
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
BseMII CTCAG 5 cut(s) 28, 165, 362, 610, 695
BseNI ACTGG 3 cut(s) 476, 631, 721
BseRI GAGGAG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 2 cut(s) 12, 172
BsiHKAI GWGCWC 1 cut(s) 540
BslI CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 2 cut(s) 12, 172
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 71
BspANI GGCC 2 cut(s) 12, 172
BspCNI CTCAG 5 cut(s) 27, 166, 361, 609, 696
BspLI GGNNCC 1 cut(s) 283
BsrI ACTGG 3 cut(s) 476, 631, 721
BssECI CCNNGG 2 cut(s) 71, 744
BssMI GATC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 197, 746
Bst4CI ACNGT 3 cut(s) 400, 440, 448
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 5 cut(s) 14, 174, 348, 596, 704
BstDSI CCRYGG 1 cut(s) 71
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 538
BstKTI GATC 1 cut(s) 429
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 412, 544
BstNI CCWGG 2 cut(s) 197, 746
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 2 cut(s) 195, 744
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 2 cut(s) 672, 678
BsuRI GGCC 2 cut(s) 12, 172
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 10, 170
Csp6I GTAC 1 cut(s) 624
CviAII CATG 5 cut(s) 72, 278, 374, 580, 755
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 5 cut(s) 14, 174, 348, 596, 704
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 195, 744
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 5 cut(s) 75, 281, 377, 583, 758
FaiI YATR 9 cut(s) 65, 73, 206, 279, 336, 375, 563, 581, 756
FatI CATG 5 cut(s) 71, 277, 373, 579, 754
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 120, 639
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 12, 172
Hin1II CATG 5 cut(s) 75, 281, 377, 583, 758
HincII GTYRAC 2 cut(s) 436, 672
HindII GTYRAC 2 cut(s) 436, 672
HinfI GANTC 3 cut(s) 116, 644, 656
HpaI GTTAAC 1 cut(s) 672
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 3 cut(s) 436, 538, 672
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 3 cut(s) 436, 538, 672
HpyAV CCTTC 2 cut(s) 337, 448
HpyCH4III ACNGT 3 cut(s) 400, 440, 448
HpyCH4V TGCA 6 cut(s) 35, 99, 538, 572, 727, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 544
HpyF3I CTNAG 5 cut(s) 14, 174, 348, 596, 704
Hsp92II CATG 5 cut(s) 75, 281, 377, 583, 758
KspAI GTTAAC 1 cut(s) 672
Kzo9I GATC 1 cut(s) 426
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 22, 559
MaeI CTAG 2 cut(s) 120, 639
MaeIII GTNAC 3 cut(s) 356, 379, 599
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 6 cut(s) 218, 337, 472, 654, 672, 678
MfeI CAATTG 2 cut(s) 384, 541
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 7 cut(s) 40, 158, 273, 384, 516, 541, 556
MlyI GAGTC 1 cut(s) 653
MnlI CCTC 7 cut(s) 23, 59, 103, 244, 605, 700, 703
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 2 cut(s) 146, 671
MspR9I CCNGG 2 cut(s) 197, 746
MunI CAATTG 2 cut(s) 384, 541
MvaI CCWGG 2 cut(s) 197, 746
MwoI GCNNNNNNNGC 2 cut(s) 412, 544
NcoI CCATGG 1 cut(s) 71
NdeII GATC 1 cut(s) 426
NlaIII CATG 5 cut(s) 75, 281, 377, 583, 758
NlaIV GGNNCC 1 cut(s) 283
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 1 cut(s) 758
PaeI GCATGC 1 cut(s) 758
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 116, 656
PflMI CCANNNNNTGG 2 cut(s) 220, 278
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 195, 744
PspGI CCWGG 2 cut(s) 195, 744
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 2 cut(s) 10, 170
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
SaqAI TTAA 2 cut(s) 146, 671
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 2 cut(s) 10, 170
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 2 cut(s) 197, 746
SduI GDGCHC 1 cut(s) 540
SetI ASST 8 cut(s) 60, 114, 198, 255, 423, 459, 468, 618
SfaNI GCATC 2 cut(s) 22, 559
SfcI CTRYAG 1 cut(s) 399
SphI GCATGC 1 cut(s) 758
Sse9I AATT 7 cut(s) 40, 158, 273, 384, 516, 541, 556
SspMI CTAG 2 cut(s) 120, 639
StyD4I CCNGG 2 cut(s) 195, 744
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 400, 440, 448
TaqI TCGA 1 cut(s) 129
TasI AATT 7 cut(s) 40, 158, 273, 384, 516, 541, 556
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 2 cut(s) 116, 656
Tru1I TTAA 2 cut(s) 146, 671
Tru9I TTAA 2 cut(s) 146, 671
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 5 cut(s) 218, 266, 467, 568, 648
TspRI CASTG 1 cut(s) 579
Van91I CCANNNNNTGG 2 cut(s) 220, 278
VneI GTGCAC 1 cut(s) 536
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 2 cut(s) 158, 556
XceI RCATGY 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 120, 639
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.