RchiOBHm_Chr6g0290771

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010527
Physical Location & Seq
Forward (+)
53760266 .. 53761635
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26088

Sequence Viewer

Length: 774 bp
ATGGGTCAGGGCCTAAGCGTGGAGATTGATGATGCAGCCAATTTTTGCCTCTGTAAGGTGGATATAAAGCCATGGCTGTTCTCCAAGAGAAAAGGATGCAGAAATTTAGAGGTTGATTCTAGTAAAATTGACATCTTTTGGGATTTAACCAATGCTAAATTTGGTTCTGGGCCTGAGCCATTAGAGAGGTTTTACTTGGCTGTTATGTTCAACCAAGAAATGGTTCTTCTTCTTGGAGATTTGAAGAGAGAGGGTCTTGGTTTCAAAGACCCGATTCATGGTTCCAATGCTGTTTTTGTTGCTAAAAGGGAACACATTTTTGGGAAGAAACTTTATGTTGCAAAGGCTCAGTTTTGTGACAAGGGGAAAACACATGATGTCACAATTGAGTGTGACACTGTTGGGCTGAATGAGCCGTACCTTGTGATCTGTGTCGACAGTAAGATTGTGATGAAGGTGAAGAAGCTGAACTGGAAATTTAGGGGAAACCACACCATCTTGGTTGATGGGTTGAGGATTGAAGTGTTCTGGGATGTGCACAATTGGCTCTTTGGTAATTCTATGGGCAATGCAGTGTTCATGTTCCAAACTTGCCTCAGTAATAATGCTGATAAGCTATGGAGTACTGGTAGTACTACTAGTGAGTCGGTTTTGGATTCGTCTTCTGTGTGGACTTGGTCTTCGTCTTCCTCCTCTCGGCAATTAAGAGAGAGCAGCAACCAGTTACAGGGTCTTGGTTTCTCACTGGTTTTGCATGCTTGGAAGAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

257

Amino Acids

29.02

Weight (kDa)

7.6

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 1 - 255 3.1e-91 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AccI GTMKAC 1 cut(s) 435
AcsI RAATTY 3 cut(s) 103, 158, 476
AfaI GTAC 3 cut(s) 419, 625, 634
AfiI CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
AgsI TTSAA 4 cut(s) 211, 244, 265, 521
AhlI ACTAGT 1 cut(s) 638
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 303, 335
AluBI AGCT 2 cut(s) 466, 616
AluI AGCT 2 cut(s) 466, 616
Alw21I GWGCWC 1 cut(s) 540
Alw44I GTGCAC 1 cut(s) 536
AoxI GGCC 2 cut(s) 10, 170
ApaLI GTGCAC 1 cut(s) 536
ApeKI GCWGC 2 cut(s) 35, 714
ApoI RAATTY 3 cut(s) 103, 158, 476
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 10, 170
AsuHPI GGTGA 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 540
BbsI GAAGAC 3 cut(s) 654, 672, 678
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 47, 726
BccI CCATC 2 cut(s) 500, 503
BceAI ACGGC 1 cut(s) 400
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 2 cut(s) 120, 639
BisI GCNGC 2 cut(s) 36, 715
BlsI GCNGC 2 cut(s) 37, 716
BmcAI AGTACT 2 cut(s) 625, 634
BmgT120I GGNCC 2 cut(s) 10, 170
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 22, 86
BpiI GAAGAC 3 cut(s) 654, 672, 678
Bpu10I CCTNAGC 2 cut(s) 14, 174
BsaJI CCNNGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
Bse1I ACTGG 4 cut(s) 476, 631, 721, 750
Bse3DI GCAATG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 101, 538
BseLI CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 3 cut(s) 165, 362, 610
BseNI ACTGG 4 cut(s) 476, 631, 721, 750
BseRI GAGGAG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 2 cut(s) 47, 726
BshFI GGCC 2 cut(s) 12, 172
BsiHKAI GWGCWC 1 cut(s) 540
BslI CCNNNNNNNGG 6 cut(s) 19, 55, 220, 278, 696, 727
BsnI GGCC 2 cut(s) 12, 172
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 71
BspANI GGCC 2 cut(s) 12, 172
BspCNI CTCAG 3 cut(s) 166, 361, 609
BspLI GGNNCC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 4 cut(s) 476, 631, 721, 750
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 400, 440
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 4 cut(s) 14, 174, 348, 596
BstDSI CCRYGG 1 cut(s) 71
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 101, 538
BstKTI GATC 1 cut(s) 429
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 412, 544
BstNSI RCATGY 1 cut(s) 758
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 47, 726
BstV2I GAAGAC 3 cut(s) 654, 672, 678
BsuRI GGCC 2 cut(s) 12, 172
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 2 cut(s) 101, 538
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 396, 579, 743
Cac8I GCNNGC 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 10, 170
Csp6I GTAC 3 cut(s) 418, 624, 633
CviAII CATG 5 cut(s) 72, 278, 374, 580, 755
CviQI GTAC 3 cut(s) 418, 624, 633
DdeI CTNAG 4 cut(s) 14, 174, 348, 596
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 5 cut(s) 75, 281, 377, 583, 758
FatI CATG 5 cut(s) 71, 277, 373, 579, 754
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 36, 715
FokI GGATG 2 cut(s) 108, 545
Fsp4HI GCNGC 2 cut(s) 36, 715
FspBI CTAG 2 cut(s) 120, 639
GluI GCNGC 2 cut(s) 36, 715
HaeIII GGCC 2 cut(s) 12, 172
Hin1II CATG 5 cut(s) 75, 281, 377, 583, 758
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 116, 274, 644, 656
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 3 cut(s) 436, 538, 672
Hpy8I GTNNAC 3 cut(s) 436, 538, 672
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 400, 440
HpyCH4V TGCA 6 cut(s) 35, 99, 341, 538, 572, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 544
HpyF3I CTNAG 4 cut(s) 14, 174, 348, 596
Hsp92II CATG 5 cut(s) 75, 281, 377, 583, 758
Kzo9I GATC 1 cut(s) 426
LpnPI CCDG 8 cut(s) 153, 186, 457, 514, 612, 713, 731, 734
Lsp1109I GCAGC 2 cut(s) 47, 726
LweI GCATC 2 cut(s) 22, 86
MaeI CTAG 2 cut(s) 120, 639
MaeIII GTNAC 4 cut(s) 356, 379, 392, 723
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 8 cut(s) 218, 221, 256, 337, 472, 654, 672, 678
MfeI CAATTG 2 cut(s) 384, 541
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 9 cut(s) 40, 103, 126, 158, 384, 476, 541, 556, 701
MlyI GAGTC 1 cut(s) 653
MnlI CCTC 8 cut(s) 59, 103, 180, 244, 507, 605, 700, 703
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 2 cut(s) 146, 704
MunI CAATTG 2 cut(s) 384, 541
MwoI GCNNNNNNNGC 2 cut(s) 412, 544
NcoI CCATGG 1 cut(s) 71
NdeII GATC 1 cut(s) 426
NlaIII CATG 5 cut(s) 75, 281, 377, 583, 758
NlaIV GGNNCC 1 cut(s) 283
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 3 cut(s) 356, 379, 392
NspI RCATGY 1 cut(s) 758
PaeI GCATGC 1 cut(s) 758
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 116, 274, 656
PflFI GACNNNGTC 1 cut(s) 676
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 37, 716
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 2 cut(s) 10, 170
PsyI GACNNNGTC 1 cut(s) 676
RsaI GTAC 3 cut(s) 419, 625, 634
RsaNI GTAC 3 cut(s) 418, 624, 633
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 146, 704
SatI GCNGC 2 cut(s) 36, 715
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 2 cut(s) 10, 170
ScaI AGTACT 2 cut(s) 625, 634
SchI GAGTC 1 cut(s) 653
SduI GDGCHC 1 cut(s) 540
SetI ASST 7 cut(s) 60, 114, 191, 423, 459, 468, 618
SfaNI GCATC 2 cut(s) 22, 86
SpeI ACTAGT 1 cut(s) 638
SphI GCATGC 1 cut(s) 758
Sse9I AATT 9 cut(s) 40, 103, 126, 158, 384, 476, 541, 556, 701
SspMI CTAG 2 cut(s) 120, 639
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 400, 440
TaqI TCGA 1 cut(s) 435
TasI AATT 9 cut(s) 40, 103, 126, 158, 384, 476, 541, 556, 701
TatI WGTACW 2 cut(s) 623, 632
TfiI GAWTC 3 cut(s) 116, 274, 656
Tru1I TTAA 2 cut(s) 146, 704
Tru9I TTAA 2 cut(s) 146, 704
TscAI CASTG 3 cut(s) 403, 579, 750
TseFI GTSAC 3 cut(s) 356, 379, 392
TseI GCWGC 2 cut(s) 35, 714
Tsp45I GTSAC 3 cut(s) 356, 379, 392
TspDTI ATGAA 3 cut(s) 266, 467, 568
TspRI CASTG 3 cut(s) 403, 579, 750
Tth111I GACNNNGTC 1 cut(s) 676
Van91I CCANNNNNTGG 1 cut(s) 220
VneI GTGCAC 1 cut(s) 536
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 3 cut(s) 103, 158, 476
XceI RCATGY 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 120, 639
ZrmI AGTACT 2 cut(s) 625, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.