Rh6BG332800

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010527
Physical Location & Seq
Forward (+)
56544238 .. 56565117
20880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG332800.1

Sequence Viewer

Length: 795 bp
ATGAGGGACTTTCCTTCTTGTTTTGGTGAAAATGGTGTTCAAGTTGCTGATTTTTCATCGTCCTCATCATCAAGAGCTGCAAAAACTGCTCATCAAAACTTGGTCTCATGTGTTTATCAGTGTAAGTTGCGAGGCCGTTTGTGTTTGATTACAGTTACATGGACCAAGAATTTGATGGGTCAGGGCCTAAGCGTGGAGATTGATGATGCAGCCAATTTTTGCCTCTGTAAGGTGGATATAAAGCCATGGCTGTTCTCCAAGAGAAAAGGATGCAGAAATTTAGAGGTTGATTCTAGTAAAATTGACATCTTTTGGGATTTAACCAATGCTAAATTTGGTTCTGGGCCTGAGCCATTAGAGAGGTTTTACTTGGCTGTTATGTTCAACCAAGAAATGGTTCTTCTTCTTGGAGATTTGAAGAGAGAGGGTCTTGGTTTCAAAGACCCGATTCATGGTTCCAATGCTGTTTTTGTTGCTAAAAGGGAACACATTTTTGGGAAGAAACTTTATGTTGCAAAGGCTCAGTTTTGTGACAAGGGGAAAACACATGATGTCACAATCGAGTGTGAGACTGTTGGGCTGAATGAGCCTTACCTTGTGATCTGTGTCGACAGTAAGATTGTGATGAAGGTGAAGAAGCTGAACTGGAAATTTAGGGGAAACCACACCATCTTGGTTGATGGGTTGAGGATTGAAGTGTTCTGGGATGTGCACAATTGGCTCTTTGACTCCAATCGGCAACTGGAACACACTCATGGAATAAGTGGGAATTGCTTGAGCAACTGCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

264

Amino Acids

29.91

Weight (kDa)

8.55

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 31 - 246 1.7e-92 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AccI GTMKAC 1 cut(s) 609
AcsI RAATTY 4 cut(s) 169, 277, 332, 650
AfiI CCNNNNNNNGG 4 cut(s) 193, 229, 394, 452
AgsI TTSAA 5 cut(s) 41, 385, 418, 439, 695
AjuI GAANNNNNNNTTGG 4 cut(s) 381, 413, 477, 509
AluBI AGCT 2 cut(s) 77, 640
AluI AGCT 2 cut(s) 77, 640
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 2 cut(s) 109, 563
Alw44I GTGCAC 1 cut(s) 710
AoxI GGCC 3 cut(s) 133, 184, 344
ApaLI GTGCAC 1 cut(s) 710
ApeKI GCWGC 2 cut(s) 77, 209
ApoI RAATTY 4 cut(s) 169, 277, 332, 650
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 162, 184, 344
AsuHPI GGTGA 2 cut(s) 38, 643
AvaII GGWCC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 2 cut(s) 64, 221
BccI CCATC 3 cut(s) 169, 674, 677
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 109, 563
BfaI CTAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 78, 210
BlsI GCNGC 2 cut(s) 79, 211
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 162, 184, 344
BmiI GGNNCC 1 cut(s) 457
BmsI GCATC 2 cut(s) 196, 260
Bpu10I CCTNAGC 2 cut(s) 188, 348
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 229, 394, 452
Bse1I ACTGG 2 cut(s) 650, 747
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 275, 712
BseLI CCNNNNNNNGG 4 cut(s) 193, 229, 394, 452
BseMII CTCAG 2 cut(s) 339, 536
BseNI ACTGG 2 cut(s) 650, 747
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 2 cut(s) 64, 221
BshFI GGCC 3 cut(s) 135, 186, 346
BsiHKAI GWGCWC 1 cut(s) 714
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 4 cut(s) 193, 229, 394, 452
BsmAI GTCTC 2 cut(s) 109, 563
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 3 cut(s) 135, 186, 346
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 1 cut(s) 600
Bsp19I CCATGG 1 cut(s) 245
BspANI GGCC 3 cut(s) 135, 186, 346
BspCNI CTCAG 2 cut(s) 340, 535
BspLI GGNNCC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 109
BsrI ACTGG 2 cut(s) 650, 747
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 3 cut(s) 154, 574, 614
Bst6I CTCTTC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 86
BstDEI CTNAG 3 cut(s) 188, 348, 522
BstDSI CCRYGG 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 275, 712
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 2 cut(s) 109, 563
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 3 cut(s) 86, 586, 718
BstSLI GKGCMC 1 cut(s) 714
BstV1I GCAGC 2 cut(s) 64, 221
BsuRI GGCC 3 cut(s) 135, 186, 346
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 275, 712
BtsIMutI CAGTG 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 162, 184, 344
CviAII CATG 6 cut(s) 108, 159, 246, 452, 548, 755
DdeI CTNAG 3 cut(s) 188, 348, 522
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 6 cut(s) 111, 162, 249, 455, 551, 758
FaiI YATR 9 cut(s) 109, 160, 239, 247, 380, 453, 510, 549, 756
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 107, 158, 245, 451, 547, 754
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 78, 210
FokI GGATG 2 cut(s) 282, 719
Fsp4HI GCNGC 2 cut(s) 78, 210
FspBI CTAG 1 cut(s) 294
GluI GCNGC 2 cut(s) 78, 210
HaeIII GGCC 3 cut(s) 135, 186, 346
Hin1II CATG 6 cut(s) 111, 162, 249, 455, 551, 758
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 3 cut(s) 290, 448, 728
HphI GGTGA 2 cut(s) 38, 643
Hpy166II GTNNAC 2 cut(s) 610, 712
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 2 cut(s) 610, 712
HpyAV CCTTC 2 cut(s) 24, 622
HpyCH4III ACNGT 3 cut(s) 154, 574, 614
HpyCH4V TGCA 5 cut(s) 80, 209, 273, 515, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 586, 718
HpyF3I CTNAG 3 cut(s) 188, 348, 522
Hsp92II CATG 6 cut(s) 111, 162, 249, 455, 551, 758
Kzo9I GATC 1 cut(s) 600
LpnPI CCDG 6 cut(s) 167, 327, 360, 631, 688, 728
Lsp1109I GCAGC 2 cut(s) 64, 221
LweI GCATC 2 cut(s) 196, 260
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 154, 530, 553
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 5 cut(s) 392, 395, 430, 511, 646
MfeI CAATTG 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 9 cut(s) 169, 214, 277, 300, 332, 650, 715, 769, 790
MlyI GAGTC 1 cut(s) 722
MnlI CCTC 7 cut(s) 73, 125, 233, 277, 354, 418, 681
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 3 cut(s) 320, 789, 793
MslI CAYNNNNRTG 1 cut(s) 753
MunI CAATTG 1 cut(s) 715
MwoI GCNNNNNNNGC 3 cut(s) 86, 586, 718
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 600
NlaIII CATG 6 cut(s) 111, 162, 249, 455, 551, 758
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 530, 553
PacI TTAATTAA 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 290, 448
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 2 cut(s) 79, 211
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 3 cut(s) 162, 184, 344
RseI CAYNNNNRTG 1 cut(s) 753
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 3 cut(s) 320, 789, 793
SatI GCNGC 2 cut(s) 78, 210
Sau3AI GATC 1 cut(s) 600
Sau96I GGNCC 3 cut(s) 162, 184, 344
SchI GAGTC 1 cut(s) 722
SduI GDGCHC 1 cut(s) 714
SetI ASST 7 cut(s) 79, 234, 288, 365, 597, 633, 642
SfaNI GCATC 2 cut(s) 196, 260
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 9 cut(s) 169, 214, 277, 300, 332, 650, 715, 769, 790
SspMI CTAG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 3 cut(s) 154, 574, 614
TaqI TCGA 2 cut(s) 561, 609
TasI AATT 9 cut(s) 169, 214, 277, 300, 332, 650, 715, 769, 790
TfiI GAWTC 2 cut(s) 290, 448
Tru1I TTAA 3 cut(s) 320, 789, 793
Tru9I TTAA 3 cut(s) 320, 789, 793
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 2 cut(s) 530, 553
TseI GCWGC 2 cut(s) 77, 209
Tsp45I GTSAC 2 cut(s) 530, 553
TspDTI ATGAA 3 cut(s) 45, 440, 641
TspRI CASTG 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 394
VneI GTGCAC 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 162
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 4 cut(s) 169, 277, 332, 650
XcmI CCANNNNNNNNNTGG 2 cut(s) 172, 739
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.