Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010527

Physical Location & Seq

Genomic Coordinates Forward (+)

21392078 .. 21393197

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCTTACGATGAGGGACTTCCCTTCTTGTTTTGGTGAAAATGGGGTTCAAATTGCAGATTTTTCGTCATCATCTTCCTCGTCGAGAGCCACAAAAACTGCCCAGAACTTGGTATCCTGCGTCTACCAATGCAAATTAAAGAGCAGATTGTGTTTGATCAATCTGACATGGACCAAGAATCTGATGGGGCAAAGCCTCGCCATCGAAATCGATGATGCAGCCGGTCATTGCCTCTGCAGAGTTGAGATTAAGCCATGGATTTTCTCCAAGAGGAAAGGGTTGAAGAATTTGGAGGTGGACTCTACGAAAATCGACATCTTTTGGGATTTAACAAATGCCAAATTTGGTTCAGGACCTGAGCCATTGGAGAAGTTTTATCTAGCTCTTATGTTTGATCAAGAAATGGTTCTGTTTCTTGGGGACTTGAGGAGGGAGGATTTCAAAAGCCCTGCTGAGTCCAATTCCAAGTTAAAATCCAAATCCAAAGCCGAGTTCGTAGCGAAAAGAGAGCACATTTTTGGGAAAAAATTTTATGGAGCAAAGGCACAGTTTTGTGATTTGGGCAAAACCCATGATTTGAAAATTGAGTGTGAAACTGCCGGGGGCCTCCATGAGCCATATCTTGTAATCAGCATTGACAGCAAGACTGTGTTGCAGGTAAAGAGGTTGAACTGGAAGTTTAGAGGCAATCACACAATTGTGGTAGATGGGATGAAAGTTGAGGTGTTTTGGGATGTGCACAATTGGCTGTTTGGGAATCCAATGGGAGATGCAGTTTTCATGTTCCAAACTTGCATCAATGTTGCAGCAGATGAAAGCAAGAAGTTATGGACTGGTTTGCCAGTTCTGATCGATCCTTCTGTGTTGAGTTGGTCATCCTCCTCTCAGGAGTTAAGAGATAATCAGTTGCAGGATTTTGGGTTCTCACTGATCTTGCATGCTTGGAAGAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

319

Amino Acids

36.06

Weight (kDa)

8.01

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23350 FvH4_2g23350 FvH4_2g23350 FvH4_2g23350 FvH4_2g23350
malus_domestica	MD03G1263000.v1.1 MD11G1283800.v1.1
prunus_persica	Prupe.8G239300_v2.0.a1
pyrus_communis	pycom03g21050 pycom11g25120
rosa_chinensis	RchiOBHm_Chr6g0290771
rosa_laevigata	RLG00000012179
rosa_multiflora	Rmu_sc0005913.1_g000018 Rmu_sc0027493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176740
rosa_rugosa	Rorug06G0214600
rosa_samantha	Rh6AG325200 Rh6BG332800 Rh6CG338500 Rh6DG326000
rosa_wichuraiana	Rw6G028240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	848
AcsI	RAATTY	3 cut(s)	286, 341, 527
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	5 cut(s)	50, 283, 442, 580, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AleI	CACNNNNGTG	1 cut(s)	698
AloI	GAACNNNNNNTCC	4 cut(s)	98, 130, 905, 937
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw21I	GWGCWC	2 cut(s)	513, 741
Alw44I	GTGCAC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	848
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	604
ApaLI	GTGCAC	1 cut(s)	737
ApeKI	GCWGC	2 cut(s)	218, 806
ApoI	RAATTY	3 cut(s)	286, 341, 527
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	3 cut(s)	171, 353, 604
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	171, 353
BaeGI	GKGCMC	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	513, 741
BbvI	GCAGC	2 cut(s)	230, 818
BccI	CCATC	3 cut(s)	178, 209, 701
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciVI	GTATCC	1 cut(s)	124
BclI	TGATCA	2 cut(s)	156, 394
BcnI	CCSGG	1 cut(s)	601
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	646
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	2 cut(s)	219, 807
BlsI	GCNGC	2 cut(s)	220, 808
Bme1390I	CCNGG	1 cut(s)	601
Bme18I	GGWCC	2 cut(s)	171, 353
BmgT120I	GGNCC	3 cut(s)	171, 353, 604
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	3 cut(s)	205, 760, 804
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	445
BpuMI	CCSGG	1 cut(s)	601
Bsa29I	ATCGAT	2 cut(s)	210, 852
BsaJI	CCNNGG	2 cut(s)	254, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	677, 838, 842
Bse3DI	GCAATG	1 cut(s)	226
BseCI	ATCGAT	2 cut(s)	210, 852
BseDI	CCNNGG	2 cut(s)	254, 600
BseGI	GGATG	3 cut(s)	717, 739, 875
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	348, 444, 899
BseNI	ACTGG	3 cut(s)	677, 838, 842
BseRI	GAGGAG	2 cut(s)	442, 871
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	2 cut(s)	230, 818
BshFI	GGCC	1 cut(s)	606
BshVI	ATCGAT	2 cut(s)	210, 852
BsiHKAI	GWGCWC	2 cut(s)	513, 741
BsiSI	CCGG	2 cut(s)	222, 600
BslFI	GGGAC	2 cut(s)	29, 434
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	29, 434
BsnI	GGCC	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	513, 741
Bsp143I	GATC	5 cut(s)	156, 394, 849, 853, 930
Bsp19I	CCATGG	1 cut(s)	254
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	3 cut(s)	349, 445, 898
BspDI	ATCGAT	2 cut(s)	210, 852
BspLI	GGNNCC	1 cut(s)	605
BspMAI	CTGCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	677, 838, 842
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	254, 600
BssMI	GATC	5 cut(s)	156, 394, 849, 853, 930
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	549, 649
BstC8I	GCNNGC	1 cut(s)	939
BstDEI	CTNAG	3 cut(s)	357, 453, 885
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	717, 739, 875
BstKTI	GATC	5 cut(s)	159, 397, 852, 856, 933
BstMBI	GATC	5 cut(s)	156, 394, 849, 853, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	639, 745
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	741
BstV1I	GCAGC	2 cut(s)	230, 818
Bsu15I	ATCGAT	2 cut(s)	210, 852
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	606
BsuTUI	ATCGAT	2 cut(s)	210, 852
BtgI	CCRYGG	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	717, 739, 875
BtsIMutI	CAGTG	1 cut(s)	926
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	939
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	171, 353, 604
ClaI	ATCGAT	2 cut(s)	210, 852
CseI	GACGC	1 cut(s)	109
CviAII	CATG	6 cut(s)	168, 255, 572, 611, 781, 938
DdeI	CTNAG	3 cut(s)	357, 453, 885
DpnI	GATC	5 cut(s)	158, 396, 851, 855, 932
DpnII	GATC	5 cut(s)	156, 394, 849, 853, 930
Eco130I	CCWWGG	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	171, 353
EcoO109I	RGGNCCY	2 cut(s)	353, 604
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	6 cut(s)	171, 258, 575, 614, 784, 941
FaqI	GGGAC	2 cut(s)	29, 434
FatI	CATG	6 cut(s)	167, 254, 571, 610, 780, 937
FbaI	TGATCA	2 cut(s)	156, 394
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	219, 807
FokI	GGATG	3 cut(s)	724, 746, 862
Fsp4HI	GCNGC	2 cut(s)	219, 807
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	2 cut(s)	219, 807
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	2 cut(s)	222, 600
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	6 cut(s)	171, 258, 575, 614, 784, 941
HinfI	GANTC	4 cut(s)	178, 299, 455, 757
HpaII	CCGG	2 cut(s)	222, 600
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	124, 298, 739
Hpy188I	TCNGA	3 cut(s)	165, 183, 849
Hpy188III	TCNNGA	4 cut(s)	84, 351, 398, 887
Hpy8I	GTNNAC	3 cut(s)	124, 298, 739
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	33, 867
HpyCH4III	ACNGT	2 cut(s)	549, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	639, 745
HpyF3I	CTNAG	3 cut(s)	357, 453, 885
Hsp92II	CATG	6 cut(s)	171, 258, 575, 614, 784, 941
Ksp22I	TGATCA	2 cut(s)	156, 394
Kzo9I	GATC	5 cut(s)	156, 394, 849, 853, 930
LmnI	GCTCC	1 cut(s)	536
Lsp1109I	GCAGC	2 cut(s)	230, 818
LweI	GCATC	3 cut(s)	205, 760, 804
MaeI	CTAG	1 cut(s)	380
MalI	GATC	5 cut(s)	158, 396, 851, 855, 932
MboI	GATC	5 cut(s)	156, 394, 849, 853, 930
MboII	GAAGA	2 cut(s)	66, 295
MfeI	CAATTG	2 cut(s)	696, 742
MhlI	GDGCHC	2 cut(s)	513, 741
MluCI	AATT	9 cut(s)	51, 134, 286, 341, 460, 527, 582, 696, 742
MlyI	GAGTC	2 cut(s)	293, 464
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	5 cut(s)	137, 249, 329, 470, 893
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	2 cut(s)	222, 600
MspR9I	CCNGG	1 cut(s)	601
MunI	CAATTG	2 cut(s)	696, 742
MwoI	GCNNNNNNNGC	2 cut(s)	639, 745
NciI	CCSGG	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	5 cut(s)	156, 394, 849, 853, 930
NlaIII	CATG	6 cut(s)	171, 258, 575, 614, 784, 941
NlaIV	GGNNCC	1 cut(s)	605
NmeAIII	GCCGAG	1 cut(s)	514
NspI	RCATGY	1 cut(s)	941
OliI	CACNNNNGTG	1 cut(s)	698
PaeI	GCATGC	1 cut(s)	941
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	178, 757
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	220, 808
PleI	GAGTC	2 cut(s)	293, 463
PpsI	GAGTC	2 cut(s)	293, 463
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	3 cut(s)	171, 353, 604
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	5 cut(s)	137, 249, 329, 470, 893
SatI	GCNGC	2 cut(s)	219, 807
Sau3AI	GATC	5 cut(s)	156, 394, 849, 853, 930
Sau96I	GGNCC	3 cut(s)	171, 353, 604
SchI	GAGTC	2 cut(s)	293, 464
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	513, 741
SetI	ASST	6 cut(s)	297, 358, 385, 660, 668, 726
SfaNI	GCATC	3 cut(s)	205, 760, 804
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	171, 353
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	9 cut(s)	51, 134, 286, 341, 460, 527, 582, 696, 742
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	549, 649
TaqI	TCGA	5 cut(s)	83, 204, 210, 312, 852
TasI	AATT	9 cut(s)	51, 134, 286, 341, 460, 527, 582, 696, 742
TfiI	GAWTC	2 cut(s)	178, 757
Tru1I	TTAA	5 cut(s)	137, 249, 329, 470, 893
Tru9I	TTAA	5 cut(s)	137, 249, 329, 470, 893
TscAI	CASTG	1 cut(s)	933
TseI	GCWGC	2 cut(s)	218, 806
TspDTI	ATGAA	3 cut(s)	728, 769, 828
TspRI	CASTG	1 cut(s)	933
Van91I	CCANNNNNTGG	1 cut(s)	109
VneI	GTGCAC	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	171, 353
XapI	RAATTY	3 cut(s)	286, 341, 527
XceI	RCATGY	1 cut(s)	941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.