Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027493.1

Orthogroup ID

OG0010527

Physical Location & Seq

Genomic Coordinates Forward (+)

2424 .. 3371

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgagggactttccttcttgttttggtgaaaatggtgttcaagttgctgatttttcatcgtcctcatcatcaagagctgcaaaaactgctcatcaaaacttggtctcatgtgtttatcagtgtaagttgcgaggccgtttgtgtttgattacagttacatggaccaagaatttgatgggtcagggcctaagcgtggagattgatgatgcagccaatttttgcctctgtaaggtggatataaagccatggctgttctccaagagaaaaggatgcagaaatttagaggttgattctagtaaaattgacatcttttgggatttaaccaatgctaaatttggttctgggcccgagccattagagaggttttacttggctgttatgttcaaccaagaaatggttcttcttcttggagatttgaagagagagggtcttggtttcaaagacccgattcatggttccaatgctgtttttgttgctaaaagggaacacatttttgggaagaaactttatgttgcaaaggctcagttttgtgacaaggggaaaacacatgatgtcacaattgagtgtgacactgttgggctgaatgagccgtaccttgtgatctgtgtcgacagtaagattgtgatgaaggtgaagaagctgaactggaaatttaggggaaaccacaccatcttggttgatgggttgaggattgaagtgttctgggatgtgcacaattggctctttggtaattctatgggcaatgcagtgttcatgttccaaacttgcctcagtaataatgctgataagctatggagtgctggtagtactactagtgagtcggttttggattcgtcttctgtgttgacttggtcttcgtcttcctcctctcggcaattaagagagagcagcaaccagttgcagggtcttggtttctcactggttttgcatgcttggaagaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

315

Amino Acids

35.31

Weight (kDa)

8.58

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23350 FvH4_2g23350 FvH4_2g23350 FvH4_2g23350 FvH4_2g23350
malus_domestica	MD03G1263000.v1.1 MD11G1283800.v1.1
prunus_persica	Prupe.8G239300_v2.0.a1
pyrus_communis	pycom03g21050 pycom11g25120
rosa_chinensis	RchiOBHm_Chr6g0290771
rosa_laevigata	RLG00000012179
rosa_multiflora	Rmu_sc0005913.1_g000018 Rmu_sc0027493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176740
rosa_rugosa	Rorug06G0214600
rosa_samantha	Rh6AG325200 Rh6BG332800 Rh6CG338500 Rh6DG326000
rosa_wichuraiana	Rw6G028240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	609
AcsI	RAATTY	4 cut(s)	169, 277, 332, 650
AfaI	GTAC	2 cut(s)	593, 808
AfiI	CCNNNNNNNGG	6 cut(s)	193, 229, 394, 452, 870, 901
AgsI	TTSAA	5 cut(s)	41, 385, 418, 439, 695
AhlI	ACTAGT	1 cut(s)	812
AjuI	GAANNNNNNNTTGG	4 cut(s)	381, 413, 477, 509
AluBI	AGCT	3 cut(s)	77, 640, 790
AluI	AGCT	3 cut(s)	77, 640, 790
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	109
Alw44I	GTGCAC	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	3 cut(s)	133, 184, 344
ApaI	GGGCCC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	3 cut(s)	77, 209, 888
ApoI	RAATTY	4 cut(s)	169, 277, 332, 650
ArsI	GACNNNNNNTTYG	4 cut(s)	154, 186, 838, 870
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	4 cut(s)	162, 184, 344, 345
AsuHPI	GGTGA	2 cut(s)	38, 643
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	2 cut(s)	348, 714
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	3 cut(s)	828, 846, 852
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	64, 221, 900
BccI	CCATC	3 cut(s)	169, 674, 677
BceAI	ACGGC	2 cut(s)	120, 574
BcoDI	GTCTC	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	2 cut(s)	294, 813
BisI	GCNGC	3 cut(s)	78, 210, 889
BlsI	GCNGC	3 cut(s)	79, 211, 890
BmcAI	AGTACT	1 cut(s)	808
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	162, 184, 344, 345
BmiI	GGNNCC	2 cut(s)	346, 457
BmsI	GCATC	2 cut(s)	196, 260
BpiI	GAAGAC	3 cut(s)	828, 846, 852
Bpu10I	CCTNAGC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 229, 394, 452, 870, 901
Bse1I	ACTGG	3 cut(s)	650, 895, 924
Bse3DI	GCAATG	1 cut(s)	748
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	275, 712
BseLI	CCNNNNNNNGG	6 cut(s)	193, 229, 394, 452, 870, 901
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	2 cut(s)	536, 784
BseNI	ACTGG	3 cut(s)	650, 895, 924
BseRI	GAGGAG	1 cut(s)	856
BseSI	GKGCMC	2 cut(s)	348, 714
BseXI	GCAGC	3 cut(s)	64, 221, 900
BshFI	GGCC	3 cut(s)	135, 186, 346
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	6 cut(s)	193, 229, 394, 452, 870, 901
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	135, 186, 346
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	347
Bsp120I	GGGCCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	348, 714
Bsp143I	GATC	1 cut(s)	600
Bsp19I	CCATGG	1 cut(s)	245
BspANI	GGCC	3 cut(s)	135, 186, 346
BspCNI	CTCAG	2 cut(s)	535, 783
BspLI	GGNNCC	2 cut(s)	346, 457
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	3 cut(s)	650, 895, 924
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	154, 574, 614
Bst6I	CTCTTC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	930
BstDEI	CTNAG	3 cut(s)	188, 522, 770
BstDSI	CCRYGG	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	275, 712
BstKTI	GATC	1 cut(s)	603
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	600
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 586, 718
BstNSI	RCATGY	1 cut(s)	932
BstSLI	GKGCMC	2 cut(s)	348, 714
BstV1I	GCAGC	3 cut(s)	64, 221, 900
BstV2I	GAAGAC	3 cut(s)	828, 846, 852
BsuRI	GGCC	3 cut(s)	135, 186, 346
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	275, 712
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	4 cut(s)	125, 570, 753, 917
Cac8I	GCNNGC	1 cut(s)	930
Cfr13I	GGNCC	4 cut(s)	162, 184, 344, 345
Csp6I	GTAC	2 cut(s)	592, 807
CviAII	CATG	7 cut(s)	108, 159, 246, 452, 548, 754, 929
CviQI	GTAC	2 cut(s)	592, 807
DdeI	CTNAG	3 cut(s)	188, 522, 770
DpnI	GATC	1 cut(s)	602
DpnII	GATC	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	7 cut(s)	111, 162, 249, 455, 551, 757, 932
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	7 cut(s)	107, 158, 245, 451, 547, 753, 928
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	3 cut(s)	78, 210, 889
FokI	GGATG	2 cut(s)	282, 719
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	78, 210, 889
FspBI	CTAG	2 cut(s)	294, 813
GluI	GCNGC	3 cut(s)	78, 210, 889
HaeIII	GGCC	3 cut(s)	135, 186, 346
Hin1II	CATG	7 cut(s)	111, 162, 249, 455, 551, 757, 932
HincII	GTYRAC	2 cut(s)	610, 846
HindII	GTYRAC	2 cut(s)	610, 846
HinfI	GANTC	4 cut(s)	290, 448, 818, 830
HphI	GGTGA	2 cut(s)	38, 643
Hpy166II	GTNNAC	3 cut(s)	610, 712, 846
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	3 cut(s)	610, 712, 846
HpyAV	CCTTC	2 cut(s)	24, 622
HpyCH4III	ACNGT	3 cut(s)	154, 574, 614
HpyCH4V	TGCA	8 cut(s)	80, 209, 273, 515, 712, 746, 901, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 586, 718
HpyF3I	CTNAG	3 cut(s)	188, 522, 770
Hsp92II	CATG	7 cut(s)	111, 162, 249, 455, 551, 757, 932
Kzo9I	GATC	1 cut(s)	600
LpnPI	CCDG	8 cut(s)	167, 327, 631, 688, 786, 887, 905, 908
Lsp1109I	GCAGC	3 cut(s)	64, 221, 900
LweI	GCATC	2 cut(s)	196, 260
MaeI	CTAG	2 cut(s)	294, 813
MaeIII	GTNAC	4 cut(s)	154, 530, 553, 566
MalI	GATC	1 cut(s)	602
MboI	GATC	1 cut(s)	600
MboII	GAAGA	8 cut(s)	392, 395, 430, 511, 646, 828, 846, 852
MfeI	CAATTG	2 cut(s)	558, 715
MhlI	GDGCHC	2 cut(s)	348, 714
MlyI	GAGTC	1 cut(s)	827
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	320, 878
MunI	CAATTG	2 cut(s)	558, 715
MwoI	GCNNNNNNNGC	3 cut(s)	86, 586, 718
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	600
NlaIII	CATG	7 cut(s)	111, 162, 249, 455, 551, 757, 932
NlaIV	GGNNCC	2 cut(s)	346, 457
NmeAIII	GCCGAG	1 cut(s)	850
NmuCI	GTSAC	3 cut(s)	530, 553, 566
NspI	RCATGY	1 cut(s)	932
PaeI	GCATGC	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	290, 448, 830
PflFI	GACNNNGTC	1 cut(s)	850
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	3 cut(s)	79, 211, 890
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PspN4I	GGNNCC	2 cut(s)	346, 457
PspOMI	GGGCCC	1 cut(s)	344
PspPI	GGNCC	4 cut(s)	162, 184, 344, 345
PsyI	GACNNNGTC	1 cut(s)	850
RsaI	GTAC	2 cut(s)	593, 808
RsaNI	GTAC	2 cut(s)	592, 807
SalI	GTCGAC	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	320, 878
SatI	GCNGC	3 cut(s)	78, 210, 889
Sau3AI	GATC	1 cut(s)	600
Sau96I	GGNCC	4 cut(s)	162, 184, 344, 345
ScaI	AGTACT	1 cut(s)	808
SchI	GAGTC	1 cut(s)	827
SduI	GDGCHC	2 cut(s)	348, 714
SetI	ASST	8 cut(s)	79, 234, 288, 365, 597, 633, 642, 792
SfaNI	GCATC	2 cut(s)	196, 260
SinI	GGWCC	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	812
SphI	GCATGC	1 cut(s)	932
SspMI	CTAG	2 cut(s)	294, 813
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	3 cut(s)	154, 574, 614
TaqI	TCGA	1 cut(s)	609
TatI	WGTACW	1 cut(s)	806
TfiI	GAWTC	3 cut(s)	290, 448, 830
Tru1I	TTAA	2 cut(s)	320, 878
Tru9I	TTAA	2 cut(s)	320, 878
TscAI	CASTG	4 cut(s)	125, 577, 753, 924
TseFI	GTSAC	3 cut(s)	530, 553, 566
TseI	GCWGC	3 cut(s)	77, 209, 888
Tsp45I	GTSAC	3 cut(s)	530, 553, 566
TspDTI	ATGAA	4 cut(s)	45, 440, 641, 742
TspRI	CASTG	4 cut(s)	125, 577, 753, 924
Tth111I	GACNNNGTC	1 cut(s)	850
Van91I	CCANNNNNTGG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	4 cut(s)	169, 277, 332, 650
XceI	RCATGY	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	294, 813
ZrmI	AGTACT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.