Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005913.1

Orthogroup ID

OG0010527

Physical Location & Seq

Genomic Coordinates Forward (+)

53564 .. 54337

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005913.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgggtcagggcctaagcgtggagattgatgatgcagccaatttttgcctctgtaaggtggatataaagccatggctgttttccaagagaaaaggatgcagaaatttagaggttgattctagtaaaattgacatcttttgggatttaaccaatgctaaatttggttctgggcccgagccattagagaggttttacttggctgttatgttcaaccaagaaatggttcttcttcttggagatttgaagagagagggtcttggtttcaaagacccgattcatggttccaatgctgtttttgttgctaaaagggaacacatttttgggaagaaactttatgttgcaaaggctcagttttgtgacaaggggaaaacacatgatgtcacaattgagtgtgacactgttgggctgaatgagccgtaccttgtgatctgtgtcgacagtaagattgtgatgaaggtgaagaagctgaactggaaatttaggggaaaccacaccatcttggttgatgggttgaggattgaagtgttctgggatgtgcacaattggctctttggtaattctatgggcaatgcagtgttcatgttccaaacttgcctcagtaataatgctgataagctatggagtactggtagtactactagtgagtcggttttggattcgtcttctgtgttgacttggtcttcgtcttcctcctctcggcaattaagagagagcagcaaccagttacagggtcttggtttctcactggttttgcatgcttggaagaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

257

Amino Acids

28.94

Weight (kDa)

7.6

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23350 FvH4_2g23350 FvH4_2g23350 FvH4_2g23350 FvH4_2g23350
malus_domestica	MD03G1263000.v1.1 MD11G1283800.v1.1
prunus_persica	Prupe.8G239300_v2.0.a1
pyrus_communis	pycom03g21050 pycom11g25120
rosa_chinensis	RchiOBHm_Chr6g0290771
rosa_laevigata	RLG00000012179
rosa_multiflora	Rmu_sc0005913.1_g000018 Rmu_sc0027493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176740
rosa_rugosa	Rorug06G0214600
rosa_samantha	Rh6AG325200 Rh6BG332800 Rh6CG338500 Rh6DG326000
rosa_wichuraiana	Rw6G028240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	435
AcsI	RAATTY	3 cut(s)	103, 158, 476
AfaI	GTAC	3 cut(s)	419, 625, 634
AfiI	CCNNNNNNNGG	6 cut(s)	19, 55, 220, 278, 696, 727
AgsI	TTSAA	4 cut(s)	211, 244, 265, 521
AhlI	ACTAGT	1 cut(s)	638
AjuI	GAANNNNNNNTTGG	4 cut(s)	207, 239, 303, 335
AluBI	AGCT	2 cut(s)	466, 616
AluI	AGCT	2 cut(s)	466, 616
Alw21I	GWGCWC	1 cut(s)	540
Alw44I	GTGCAC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	10, 170
ApaI	GGGCCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	35, 714
ApoI	RAATTY	3 cut(s)	103, 158, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	10, 170, 171
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	174, 540
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	654, 672, 678
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	47, 726
BccI	CCATC	2 cut(s)	500, 503
BceAI	ACGGC	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	120, 639
BisI	GCNGC	2 cut(s)	36, 715
BlsI	GCNGC	2 cut(s)	37, 716
BmcAI	AGTACT	2 cut(s)	625, 634
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	10, 170, 171
BmiI	GGNNCC	2 cut(s)	172, 283
BmsI	GCATC	2 cut(s)	22, 86
BpiI	GAAGAC	3 cut(s)	654, 672, 678
Bpu10I	CCTNAGC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 55, 220, 278, 696, 727
Bse1I	ACTGG	4 cut(s)	476, 631, 721, 750
Bse3DI	GCAATG	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	101, 538
BseLI	CCNNNNNNNGG	6 cut(s)	19, 55, 220, 278, 696, 727
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	362, 610
BseNI	ACTGG	4 cut(s)	476, 631, 721, 750
BseRI	GAGGAG	1 cut(s)	682
BseSI	GKGCMC	2 cut(s)	174, 540
BseXI	GCAGC	2 cut(s)	47, 726
BshFI	GGCC	2 cut(s)	12, 172
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	173
BslI	CCNNNNNNNGG	6 cut(s)	19, 55, 220, 278, 696, 727
BsnI	GGCC	2 cut(s)	12, 172
BsoBI	CYCGRG	1 cut(s)	173
Bsp120I	GGGCCC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	174, 540
Bsp143I	GATC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	71
BspANI	GGCC	2 cut(s)	12, 172
BspCNI	CTCAG	2 cut(s)	361, 609
BspLI	GGNNCC	2 cut(s)	172, 283
BsrDI	GCAATG	1 cut(s)	574
BsrI	ACTGG	4 cut(s)	476, 631, 721, 750
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	400, 440
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	3 cut(s)	14, 348, 596
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	101, 538
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 544
BstNSI	RCATGY	1 cut(s)	758
BstSLI	GKGCMC	2 cut(s)	174, 540
BstV1I	GCAGC	2 cut(s)	47, 726
BstV2I	GAAGAC	3 cut(s)	654, 672, 678
BsuRI	GGCC	2 cut(s)	12, 172
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	101, 538
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	396, 579, 743
Cac8I	GCNNGC	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	10, 170, 171
Csp6I	GTAC	3 cut(s)	418, 624, 633
CviAII	CATG	5 cut(s)	72, 278, 374, 580, 755
CviQI	GTAC	3 cut(s)	418, 624, 633
DdeI	CTNAG	3 cut(s)	14, 348, 596
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	5 cut(s)	75, 281, 377, 583, 758
FatI	CATG	5 cut(s)	71, 277, 373, 579, 754
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	36, 715
FokI	GGATG	2 cut(s)	108, 545
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	36, 715
FspBI	CTAG	2 cut(s)	120, 639
GluI	GCNGC	2 cut(s)	36, 715
HaeIII	GGCC	2 cut(s)	12, 172
Hin1II	CATG	5 cut(s)	75, 281, 377, 583, 758
HincII	GTYRAC	2 cut(s)	436, 672
HindII	GTYRAC	2 cut(s)	436, 672
HinfI	GANTC	4 cut(s)	116, 274, 644, 656
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	436, 538, 672
Hpy8I	GTNNAC	3 cut(s)	436, 538, 672
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	2 cut(s)	400, 440
HpyCH4V	TGCA	6 cut(s)	35, 99, 341, 538, 572, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 544
HpyF3I	CTNAG	3 cut(s)	14, 348, 596
Hsp92II	CATG	5 cut(s)	75, 281, 377, 583, 758
Kzo9I	GATC	1 cut(s)	426
LpnPI	CCDG	7 cut(s)	153, 457, 514, 612, 713, 731, 734
Lsp1109I	GCAGC	2 cut(s)	47, 726
LweI	GCATC	2 cut(s)	22, 86
MaeI	CTAG	2 cut(s)	120, 639
MaeIII	GTNAC	4 cut(s)	356, 379, 392, 723
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	8 cut(s)	218, 221, 256, 337, 472, 654, 672, 678
MfeI	CAATTG	2 cut(s)	384, 541
MhlI	GDGCHC	2 cut(s)	174, 540
MluCI	AATT	9 cut(s)	40, 103, 126, 158, 384, 476, 541, 556, 701
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	8 cut(s)	59, 103, 180, 244, 507, 605, 700, 703
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	146, 704
MunI	CAATTG	2 cut(s)	384, 541
MwoI	GCNNNNNNNGC	2 cut(s)	412, 544
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	5 cut(s)	75, 281, 377, 583, 758
NlaIV	GGNNCC	2 cut(s)	172, 283
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	3 cut(s)	356, 379, 392
NspI	RCATGY	1 cut(s)	758
PaeI	GCATGC	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	116, 274, 656
PflFI	GACNNNGTC	1 cut(s)	676
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	37, 716
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	172, 283
PspOMI	GGGCCC	1 cut(s)	170
PspPI	GGNCC	3 cut(s)	10, 170, 171
PsyI	GACNNNGTC	1 cut(s)	676
RsaI	GTAC	3 cut(s)	419, 625, 634
RsaNI	GTAC	3 cut(s)	418, 624, 633
SalI	GTCGAC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	146, 704
SatI	GCNGC	2 cut(s)	36, 715
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	3 cut(s)	10, 170, 171
ScaI	AGTACT	2 cut(s)	625, 634
SchI	GAGTC	1 cut(s)	653
SduI	GDGCHC	2 cut(s)	174, 540
SetI	ASST	7 cut(s)	60, 114, 191, 423, 459, 468, 618
SfaNI	GCATC	2 cut(s)	22, 86
SpeI	ACTAGT	1 cut(s)	638
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	9 cut(s)	40, 103, 126, 158, 384, 476, 541, 556, 701
SspMI	CTAG	2 cut(s)	120, 639
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	400, 440
TaqI	TCGA	1 cut(s)	435
TasI	AATT	9 cut(s)	40, 103, 126, 158, 384, 476, 541, 556, 701
TatI	WGTACW	2 cut(s)	623, 632
TfiI	GAWTC	3 cut(s)	116, 274, 656
Tru1I	TTAA	2 cut(s)	146, 704
Tru9I	TTAA	2 cut(s)	146, 704
TscAI	CASTG	3 cut(s)	403, 579, 750
TseFI	GTSAC	3 cut(s)	356, 379, 392
TseI	GCWGC	2 cut(s)	35, 714
Tsp45I	GTSAC	3 cut(s)	356, 379, 392
TspDTI	ATGAA	3 cut(s)	266, 467, 568
TspRI	CASTG	3 cut(s)	403, 579, 750
Tth111I	GACNNNGTC	1 cut(s)	676
Van91I	CCANNNNNTGG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	536
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	3 cut(s)	103, 158, 476
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	2 cut(s)	120, 639
ZrmI	AGTACT	2 cut(s)	625, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.