RLG00000012179

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010527
Physical Location & Seq
Reverse (-)
16027483 .. 16028430
948 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012179

Sequence Viewer

Length: 948 bp
ATGAGGGACTTTCCTTCTTGTTTTGGTGAAAATGGTGTTCAAGTTGCTGATTTTTCATCGTCCTCATCATCAAGAGCTGCAAAAACTGCTCATCAAAACTTGGTCTCATGTGTTTATCAGTGTAAGTTGCGAGGCCGTTTGTGTTTGATTACAGTTACATGGACCAAGAATTTGATGGGTCAGGGCCTAAGCGTGGAGATTGATGATGCAGCCAATTTTTGCCTCTGTAAGGTGGATATAAAGCCATGGCTGTTCTCCAAGAGAAAAGGATGCAGAAATTTAGAGGTTGATTCTAGTAAAATTGACATCTTTTGGGATTTAACCAATGCTAGATTTGGTTCTGGGCCTGAGCCATTAGAGAGGTTTTACTTGGCTGTTATGTTCAACCAAGAAATGGTTCTTCTTCTTGGAGATTTGAAGAGAGAGGGTCTTGGTTTCAAAGACCCGATTCATGGTTCTAATGCTGTTTTTGTTGCTAAAAGGGAACACATTTTTGGGAAGAAACTTTATGTTGCAAAGGCTCAGTTTTGTGACAAGGGGAAAACACATGATGTCACAATTGAGTGTGACACTGTTGGGCTGAATGAGCCTTACCTTGTGATCTGTGTCGACAGTAAGATTGTGATGAAGGTGAAGAAGCTGAACTGGAAATTTAGGGGAAACCACACCATCTTGGTTGATGGGTTGAGGATTGAAGTGTTCTGGGATGTGCACAATTGGCTCTTTGGTAATTCTATGGGCAATGCAGTGTTCATGTTCCAAACTTGCCTCAGTAATAATGCTGATAAGCTATGGAGTACTGGTAGTACTACTAGTGAGTCGGTTTTGGATTCGTCTTCTGTGTTGACTTGGTCTTCGTCTTCCTCCTCTCGGCAATTAAGAGAGAGCAGCAACCAGTTACAGGGTCTTGGTTTCTCACTGATTTTGCATGCTTGGAAGAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

316

Amino Acids

35.38

Weight (kDa)

8.58

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 31 - 313 5.6e-105 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AccI GTMKAC 1 cut(s) 609
AcsI RAATTY 3 cut(s) 169, 277, 650
AfaI GTAC 2 cut(s) 799, 808
AfiI CCNNNNNNNGG 6 cut(s) 193, 229, 394, 452, 870, 901
AgsI TTSAA 5 cut(s) 41, 385, 418, 439, 695
AhlI ACTAGT 1 cut(s) 812
AjuI GAANNNNNNNTTGG 4 cut(s) 381, 413, 477, 509
AluBI AGCT 3 cut(s) 77, 640, 790
AluI AGCT 3 cut(s) 77, 640, 790
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 1 cut(s) 109
Alw44I GTGCAC 1 cut(s) 710
AoxI GGCC 3 cut(s) 133, 184, 344
ApaLI GTGCAC 1 cut(s) 710
ApeKI GCWGC 3 cut(s) 77, 209, 888
ApoI RAATTY 3 cut(s) 169, 277, 650
ArsI GACNNNNNNTTYG 4 cut(s) 154, 186, 838, 870
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 162, 184, 344
AsuHPI GGTGA 2 cut(s) 38, 643
AvaII GGWCC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 714
BbsI GAAGAC 3 cut(s) 828, 846, 852
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 3 cut(s) 64, 221, 900
BccI CCATC 3 cut(s) 169, 674, 677
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 109
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 3 cut(s) 294, 330, 813
BisI GCNGC 3 cut(s) 78, 210, 889
BlsI GCNGC 3 cut(s) 79, 211, 890
BmcAI AGTACT 2 cut(s) 799, 808
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 162, 184, 344
BmsI GCATC 2 cut(s) 196, 260
BpiI GAAGAC 3 cut(s) 828, 846, 852
Bpu10I CCTNAGC 2 cut(s) 188, 348
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 229, 394, 452, 870, 901
Bse1I ACTGG 3 cut(s) 650, 805, 895
Bse3DI GCAATG 1 cut(s) 748
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 275, 712
BseLI CCNNNNNNNGG 6 cut(s) 193, 229, 394, 452, 870, 901
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 3 cut(s) 339, 536, 784
BseNI ACTGG 3 cut(s) 650, 805, 895
BseRI GAGGAG 1 cut(s) 856
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 3 cut(s) 64, 221, 900
BshFI GGCC 3 cut(s) 135, 186, 346
BsiHKAI GWGCWC 1 cut(s) 714
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 6 cut(s) 193, 229, 394, 452, 870, 901
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 3 cut(s) 135, 186, 346
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 1 cut(s) 600
Bsp19I CCATGG 1 cut(s) 245
BspANI GGCC 3 cut(s) 135, 186, 346
BspCNI CTCAG 3 cut(s) 340, 535, 783
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 3 cut(s) 650, 805, 895
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 3 cut(s) 154, 574, 614
Bst6I CTCTTC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 930
BstDEI CTNAG 4 cut(s) 188, 348, 522, 770
BstDSI CCRYGG 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 275, 712
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 3 cut(s) 86, 586, 718
BstNSI RCATGY 1 cut(s) 932
BstSLI GKGCMC 1 cut(s) 714
BstV1I GCAGC 3 cut(s) 64, 221, 900
BstV2I GAAGAC 3 cut(s) 828, 846, 852
BsuRI GGCC 3 cut(s) 135, 186, 346
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 275, 712
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 4 cut(s) 125, 570, 753, 917
Cac8I GCNNGC 1 cut(s) 930
Cfr13I GGNCC 3 cut(s) 162, 184, 344
Csp6I GTAC 2 cut(s) 798, 807
CviAII CATG 7 cut(s) 108, 159, 246, 452, 548, 754, 929
CviQI GTAC 2 cut(s) 798, 807
DdeI CTNAG 4 cut(s) 188, 348, 522, 770
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 7 cut(s) 111, 162, 249, 455, 551, 757, 932
FaqI GGGAC 1 cut(s) 20
FatI CATG 7 cut(s) 107, 158, 245, 451, 547, 753, 928
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 3 cut(s) 78, 210, 889
FokI GGATG 2 cut(s) 282, 719
Fsp4HI GCNGC 3 cut(s) 78, 210, 889
FspBI CTAG 3 cut(s) 294, 330, 813
GluI GCNGC 3 cut(s) 78, 210, 889
HaeIII GGCC 3 cut(s) 135, 186, 346
Hin1II CATG 7 cut(s) 111, 162, 249, 455, 551, 757, 932
HincII GTYRAC 2 cut(s) 610, 846
HindII GTYRAC 2 cut(s) 610, 846
HinfI GANTC 4 cut(s) 290, 448, 818, 830
HphI GGTGA 2 cut(s) 38, 643
Hpy166II GTNNAC 3 cut(s) 610, 712, 846
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 3 cut(s) 610, 712, 846
HpyAV CCTTC 2 cut(s) 24, 622
HpyCH4III ACNGT 3 cut(s) 154, 574, 614
HpyCH4V TGCA 7 cut(s) 80, 209, 273, 515, 712, 746, 928
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 586, 718
HpyF3I CTNAG 4 cut(s) 188, 348, 522, 770
Hsp92II CATG 7 cut(s) 111, 162, 249, 455, 551, 757, 932
Kzo9I GATC 1 cut(s) 600
LpnPI CCDG 8 cut(s) 167, 327, 360, 631, 688, 786, 887, 908
Lsp1109I GCAGC 3 cut(s) 64, 221, 900
LweI GCATC 2 cut(s) 196, 260
MaeI CTAG 3 cut(s) 294, 330, 813
MaeIII GTNAC 5 cut(s) 154, 530, 553, 566, 897
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 8 cut(s) 392, 395, 430, 511, 646, 828, 846, 852
MfeI CAATTG 2 cut(s) 558, 715
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 9 cut(s) 169, 214, 277, 300, 558, 650, 715, 730, 875
MlyI GAGTC 1 cut(s) 827
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 2 cut(s) 320, 878
MunI CAATTG 2 cut(s) 558, 715
MwoI GCNNNNNNNGC 3 cut(s) 86, 586, 718
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 600
NlaIII CATG 7 cut(s) 111, 162, 249, 455, 551, 757, 932
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 3 cut(s) 530, 553, 566
NspI RCATGY 1 cut(s) 932
PaeI GCATGC 1 cut(s) 932
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 3 cut(s) 290, 448, 830
PflFI GACNNNGTC 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 3 cut(s) 79, 211, 890
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PspPI GGNCC 3 cut(s) 162, 184, 344
PsyI GACNNNGTC 1 cut(s) 850
RsaI GTAC 2 cut(s) 799, 808
RsaNI GTAC 2 cut(s) 798, 807
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 2 cut(s) 320, 878
SatI GCNGC 3 cut(s) 78, 210, 889
Sau3AI GATC 1 cut(s) 600
Sau96I GGNCC 3 cut(s) 162, 184, 344
ScaI AGTACT 2 cut(s) 799, 808
SchI GAGTC 1 cut(s) 827
SduI GDGCHC 1 cut(s) 714
SetI ASST 8 cut(s) 79, 234, 288, 365, 597, 633, 642, 792
SfaNI GCATC 2 cut(s) 196, 260
SinI GGWCC 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 812
SphI GCATGC 1 cut(s) 932
Sse9I AATT 9 cut(s) 169, 214, 277, 300, 558, 650, 715, 730, 875
SspMI CTAG 3 cut(s) 294, 330, 813
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 3 cut(s) 154, 574, 614
TaqI TCGA 1 cut(s) 609
TasI AATT 9 cut(s) 169, 214, 277, 300, 558, 650, 715, 730, 875
TatI WGTACW 2 cut(s) 797, 806
TfiI GAWTC 3 cut(s) 290, 448, 830
Tru1I TTAA 2 cut(s) 320, 878
Tru9I TTAA 2 cut(s) 320, 878
TscAI CASTG 4 cut(s) 125, 577, 753, 924
TseFI GTSAC 3 cut(s) 530, 553, 566
TseI GCWGC 3 cut(s) 77, 209, 888
Tsp45I GTSAC 3 cut(s) 530, 553, 566
TspDTI ATGAA 4 cut(s) 45, 440, 641, 742
TspRI CASTG 4 cut(s) 125, 577, 753, 924
Tth111I GACNNNGTC 1 cut(s) 850
Van91I CCANNNNNTGG 1 cut(s) 394
VneI GTGCAC 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 162
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 3 cut(s) 169, 277, 650
XceI RCATGY 1 cut(s) 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 294, 330, 813
ZrmI AGTACT 2 cut(s) 799, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.