FvH4_2g28810

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
22477222 .. 22482172
4951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28810.t1

Sequence Viewer

Length: 1599 bp
ATGGGGTTCATCGTGGGATTGATCGTCGGCATTGCTATCGGAATCGGGTTGATCATGGCTTTTGCTCGGGGCGAGAGCAGACGATCCAAACATCGTTCTGATTTGTTGACTTGGCTTAACCAACATCTTGATAAGATCTGGCCATACATTAATGAAGCGGCATCAGAGCTGATAAAAAGCAATGTGGAACCAATACTTGAACAATATACCCCGGCTATCTTGGATTCACTCAAATTCTCGACATTGACCCTTGGCAATGTTGCTCCACAATTTACAGGAATTTCCCTTGTTGAAAGTGAATGTGGACCTGGGGGAATCACCATCGAGTTTGAGATACAGTGGGATGGTGATCCAGATATTGTACTTGATATCAATACCAGAGTTGGTCTTGCACTACCTGTACAGGTGAAAGATATTGGATTCACTGGGGTTTTCAGGGTAATTTTGAAACCGCTAATTGACCAGTTTCCTTGTTTTGGAGCTATTTCATATTCCCTAAGAGAAAAGAGAAAGCTGGACTTTGTGTTCAAAGTCTCTGGTAGTGAAATATCATCAATCCCAGGAATTTCCGAGGCTCTTGAGGAAACAATACGAGATGCTATTGAAGATTGTATTATTTGGCCAGTTCGTAACATTATTCCCATTATACCTGGCGATTACAGTGACTTGGAGTTGAAGCCTGTTGGAACTTTAGAAGTGAAGCTTGTGGAAGCCAAGGAGTTACCAAATATGGACATCGTAGGAAAATCAGATCCTTTTGCTGTGATATTCATACGTCCACTTCCTGACAGAACAAAAACCAGCAAAGTCATTGACAATGATTTAAATCCAATTTGGAATGAGCACTTTGAGTTCATAGTTGAAGATGATACAACTCAACGGTTGACAGTAAGAATTTACGATGATGAAGGACTTCAGGCTGCAGAGTTCATTGGCTGTTGTCAAATTTCACTGAGTACACTCGAGCCTGGTAAAGTGAAGGATGTATGGTTAAAACTTTTGAAGGATTTGGACATCCAGAGAGATACTAAGTACCGGGGTCAGGTGCACTTGGAGCTGTTATACTGCCCGTTTGGTACAGATGGGAACATTGTAAACCCGTTCGACCATGACTTCTCCTTGACCTCTTTGGAAAAGGCTTTGAAGATTGATAATATAACAAAAGCAGACTTGAGAGAAATGGCCGCTAAGAAGAAGAAGGAAATGTTTATAAGAGGAGTACTATCTGTAACAGTTATATCTGCAGAAGACCTACCGATAGTAGATTTTATGGGGAAGGCTGACCCGTATGTTGTCCTTCTTATGAAGAAATCTGAAGCAAAGCAAAAGACCAGGGTTATAACAAACAACTTGAATCCAGTTTGGAATCAGACATTTGACTTCATGGTGGAGGATGCATTACATGAAATGGTAATCATCGAAGTTTGGGACCATGACACTTTTGGGAAGGATAGAATTGGGAGAGTGATCATGACACTCACCAGGGTCTTAATGGAAGGAGAATATCAGGAGAGTTATAACATAGATCTTGCCAAATCTGGAAGGATAACTTTGAGTTTCAAATGGGTTCCGCAGCATAAAGTCCGTGATTCTTCTTGA

Protein Analysis

533

Amino Acids

60.04

Weight (kDa)

5.03

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 37 - 215 1.9e-13 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 229 - 333 4.6e-26 C2 domain
C2 PF00168 406 - 507 2.2e-27 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1211, 1340, 1518
AciI CCGC 4 cut(s) 158, 452, 1185, 1571
AclWI GGATC 3 cut(s) 78, 344, 746
AcoI YGGCCR 3 cut(s) 140, 620, 1182
AcsI RAATTY 5 cut(s) 233, 279, 564, 894, 945
AcuI CTGAAG 2 cut(s) 899, 1335
AfaI GTAC 6 cut(s) 363, 402, 958, 1034, 1078, 1221
AfiI CCNNNNNNNGG 2 cut(s) 476, 1042
AjnI CCWGG 6 cut(s) 307, 559, 649, 967, 1331, 1481
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 5 cut(s) 169, 482, 514, 703, 1057
AluI AGCT 5 cut(s) 169, 482, 514, 703, 1057
Alw21I GWGCWC 2 cut(s) 846, 1050
Alw26I GTCTC 1 cut(s) 538
Alw44I GTGCAC 1 cut(s) 1046
AlwI GGATC 3 cut(s) 78, 344, 746
Ama87I CYCGRG 2 cut(s) 66, 962
AoxI GGCC 3 cut(s) 140, 620, 1182
ApaLI GTGCAC 1 cut(s) 1046
ApeKI GCWGC 2 cut(s) 920, 1573
ApoI RAATTY 5 cut(s) 233, 279, 564, 894, 945
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 912
AspS9I GGNCC 2 cut(s) 305, 1429
AsuC2I CCSGG 2 cut(s) 212, 1037
AsuHPI GGTGA 4 cut(s) 310, 359, 418, 1471
AvaI CYCGRG 2 cut(s) 66, 962
AvaII GGWCC 2 cut(s) 305, 1429
BaeGI GKGCMC 1 cut(s) 1050
BalI TGGCCA 2 cut(s) 142, 622
BbsI GAAGAC 1 cut(s) 1254
Bbv12I GWGCWC 2 cut(s) 846, 1050
BbvI GCAGC 2 cut(s) 907, 1585
BccI CCATC 3 cut(s) 329, 338, 1076
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 6 cut(s) 309, 561, 651, 969, 1333, 1483
BclI TGATCA 2 cut(s) 51, 1467
BcnI CCSGG 2 cut(s) 212, 1037
BcoDI GTCTC 1 cut(s) 538
BfmI CTRYAG 2 cut(s) 921, 1242
BglII AGATCT 2 cut(s) 135, 1525
BisI GCNGC 4 cut(s) 159, 921, 1185, 1574
BlsI GCNGC 4 cut(s) 160, 922, 1186, 1575
BmcAI AGTACT 1 cut(s) 1221
Bme1390I CCNGG 8 cut(s) 212, 309, 561, 651, 969, 1037, 1333, 1483
Bme18I GGWCC 2 cut(s) 305, 1429
BmeT110I CYCGRG 2 cut(s) 66, 962
BmgT120I GGNCC 2 cut(s) 305, 1429
BmiI GGNNCC 3 cut(s) 189, 1430, 1569
BmrFI CCNGG 8 cut(s) 212, 309, 561, 651, 969, 1037, 1333, 1483
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 3 cut(s) 170, 586, 1384
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 1254
BpuEI CTTGAG 2 cut(s) 599, 1192
BpuMI CCSGG 2 cut(s) 212, 1037
BsaBI GATNNNNATC 2 cut(s) 348, 825
BsaJI CCNNGG 9 cut(s) 210, 250, 308, 559, 570, 714, 1036, 1332, 1482
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 1042
Bse1I ACTGG 4 cut(s) 430, 463, 623, 1358
Bse3DI GCAATG 3 cut(s) 30, 187, 262
Bse8I GATNNNNATC 2 cut(s) 348, 825
BseBI CCWGG 6 cut(s) 309, 561, 651, 969, 1333, 1483
BseDI CCNNGG 9 cut(s) 210, 250, 308, 559, 570, 714, 1036, 1332, 1482
BseGI GGATG 4 cut(s) 349, 988, 1014, 1399
BseJI GATNNNNATC 2 cut(s) 348, 825
BseLI CCNNNNNNNGG 2 cut(s) 476, 1042
BseMI GCAATG 3 cut(s) 30, 187, 262
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 4 cut(s) 430, 463, 623, 1358
BseRI GAGGAG 1 cut(s) 1230
BseSI GKGCMC 1 cut(s) 1050
BseXI GCAGC 2 cut(s) 907, 1585
BshFI GGCC 3 cut(s) 142, 622, 1184
BsiHKAI GWGCWC 2 cut(s) 846, 1050
BsiHKCI CYCGRG 2 cut(s) 66, 962
BsiSI CCGG 2 cut(s) 212, 1036
BslFI GGGAC 1 cut(s) 1442
BslI CCNNNNNNNGG 2 cut(s) 476, 1042
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 1442
BsnI GGCC 3 cut(s) 142, 622, 1184
BsoBI CYCGRG 2 cut(s) 66, 962
Bsp1286I GDGCHC 2 cut(s) 846, 1050
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
BspACI CCGC 4 cut(s) 158, 452, 1185, 1571
BspANI GGCC 3 cut(s) 142, 622, 1184
BspCNI CTCAG 1 cut(s) 945
BspHI TCATGA 1 cut(s) 1470
BspLI GGNNCC 3 cut(s) 189, 1430, 1569
BspMAI CTGCAG 2 cut(s) 925, 1246
BspPI GGATC 3 cut(s) 78, 344, 746
BsrDI GCAATG 3 cut(s) 30, 187, 262
BsrGI TGTACA 1 cut(s) 400
BsrI ACTGG 4 cut(s) 430, 463, 623, 1358
BssECI CCNNGG 9 cut(s) 210, 250, 308, 559, 570, 714, 1036, 1332, 1482
BssMI GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
BssT1I CCWWGG 2 cut(s) 250, 714
Bst2UI CCWGG 6 cut(s) 309, 561, 651, 969, 1333, 1483
Bst4CI ACNGT 5 cut(s) 339, 662, 882, 889, 1234
BstAUI TGTACA 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 497, 953, 1029, 1188
BstF5I GGATG 4 cut(s) 349, 988, 1014, 1399
BstKTI GATC 8 cut(s) 24, 54, 86, 138, 352, 754, 1470, 1528
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
BstMWI GCNNNNNNNGC 1 cut(s) 1054
BstNI CCWGG 6 cut(s) 309, 561, 651, 969, 1333, 1483
BstSCI CCNGG 8 cut(s) 210, 307, 559, 649, 967, 1035, 1331, 1481
BstSFI CTRYAG 2 cut(s) 921, 1242
BstSLI GKGCMC 1 cut(s) 1050
BstV1I GCAGC 2 cut(s) 907, 1585
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 3 cut(s) 135, 751, 1525
BstYI RGATCY 3 cut(s) 135, 751, 1525
BsuRI GGCC 3 cut(s) 142, 622, 1184
BtsCI GGATG 4 cut(s) 349, 988, 1014, 1399
BtsIMutI CAGTG 4 cut(s) 344, 423, 667, 950
CciI TCATGA 1 cut(s) 1470
Cfr13I GGNCC 2 cut(s) 305, 1429
Csp6I GTAC 6 cut(s) 362, 401, 957, 1033, 1077, 1220
CviAII CATG 6 cut(s) 55, 1109, 1384, 1403, 1433, 1471
CviQI GTAC 6 cut(s) 362, 401, 957, 1033, 1077, 1220
DdeI CTNAG 4 cut(s) 497, 953, 1029, 1188
DpnI GATC 8 cut(s) 23, 53, 85, 137, 351, 753, 1469, 1527
DpnII GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
DraI TTTAAA 1 cut(s) 825
EaeI YGGCCR 3 cut(s) 140, 620, 1182
Eco130I CCWWGG 2 cut(s) 250, 714
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 305, 1429
Eco57I CTGAAG 2 cut(s) 899, 1335
Eco88I CYCGRG 2 cut(s) 66, 962
EcoRII CCWGG 6 cut(s) 307, 559, 649, 967, 1331, 1481
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 250, 714
EcoT22I ATGCAT 1 cut(s) 1399
ErhI CCWWGG 2 cut(s) 250, 714
FaeI CATG 6 cut(s) 58, 1112, 1387, 1406, 1436, 1474
FalI AAGNNNNNCTT 6 cut(s) 503, 535, 687, 719, 1534, 1566
FaqI GGGAC 1 cut(s) 1442
FatI CATG 6 cut(s) 54, 1108, 1383, 1402, 1432, 1470
FbaI TGATCA 2 cut(s) 51, 1467
Fnu4HI GCNGC 4 cut(s) 159, 921, 1185, 1574
FokI GGATG 4 cut(s) 356, 995, 1001, 1406
Fsp4HI GCNGC 4 cut(s) 159, 921, 1185, 1574
GluI GCNGC 4 cut(s) 159, 921, 1185, 1574
HaeIII GGCC 3 cut(s) 142, 622, 1184
HapII CCGG 2 cut(s) 212, 1036
Hin1II CATG 6 cut(s) 58, 1112, 1387, 1406, 1436, 1474
HincII GTYRAC 2 cut(s) 108, 885
HindII GTYRAC 2 cut(s) 108, 885
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 7 cut(s) 42, 224, 315, 420, 1354, 1366, 1589
HpaII CCGG 2 cut(s) 212, 1036
HphI GGTGA 4 cut(s) 310, 359, 418, 1471
Hpy166II GTNNAC 7 cut(s) 108, 305, 779, 885, 959, 1048, 1096
Hpy188I TCNGA 7 cut(s) 41, 100, 166, 571, 751, 1315, 1371
Hpy8I GTNNAC 7 cut(s) 108, 305, 779, 885, 959, 1048, 1096
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 9 cut(s) 902, 973, 997, 1192, 1270, 1307, 1441, 1490, 1536
HpyCH4III ACNGT 5 cut(s) 339, 662, 882, 889, 1234
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 5 cut(s) 392, 923, 1048, 1244, 1397
HpyF10VI GCNNNNNNNGC 1 cut(s) 1054
HpyF3I CTNAG 4 cut(s) 497, 953, 1029, 1188
HpySE526I ACGT 1 cut(s) 775
Hsp92II CATG 6 cut(s) 58, 1112, 1387, 1406, 1436, 1474
Ksp22I TGATCA 2 cut(s) 51, 1467
Kzo9I GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
LmnI GCTCC 3 cut(s) 268, 479, 1054
Lsp1109I GCAGC 2 cut(s) 907, 1585
LweI GCATC 3 cut(s) 170, 586, 1384
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 4 cut(s) 629, 662, 720, 1228
MalI GATC 8 cut(s) 23, 53, 85, 137, 351, 753, 1469, 1527
MboI GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
MboII GAAGA 8 cut(s) 617, 875, 1156, 1204, 1207, 1259, 1318, 1584
MflI RGATCY 3 cut(s) 135, 751, 1525
MhlI GDGCHC 2 cut(s) 846, 1050
MlsI TGGCCA 2 cut(s) 142, 622
MluNI TGGCCA 2 cut(s) 142, 622
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 5 cut(s) 565, 574, 1135, 1208, 1384
Mox20I TGGCCA 2 cut(s) 142, 622
Mph1103I ATGCAT 1 cut(s) 1399
MroXI GAANNNNTTC 1 cut(s) 912
MscI TGGCCA 2 cut(s) 142, 622
MseI TTAA 5 cut(s) 117, 150, 824, 992, 1490
Msp20I TGGCCA 2 cut(s) 142, 622
MspI CCGG 2 cut(s) 212, 1036
MspR9I CCNGG 8 cut(s) 212, 309, 561, 651, 969, 1037, 1333, 1483
MvaI CCWGG 6 cut(s) 309, 561, 651, 969, 1333, 1483
MwoI GCNNNNNNNGC 1 cut(s) 1054
NciI CCSGG 2 cut(s) 212, 1037
NdeII GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
NlaIII CATG 6 cut(s) 58, 1112, 1387, 1406, 1436, 1474
NlaIV GGNNCC 3 cut(s) 189, 1430, 1569
NmuCI GTSAC 1 cut(s) 662
NsiI ATGCAT 1 cut(s) 1399
PaeR7I CTCGAG 1 cut(s) 962
PagI TCATGA 1 cut(s) 1470
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 7 cut(s) 42, 224, 315, 420, 1354, 1366, 1589
PkrI GCNGC 4 cut(s) 160, 922, 1186, 1575
PshBI ATTAAT 1 cut(s) 150
PsiI TTATAA 3 cut(s) 1211, 1340, 1518
Psp6I CCWGG 6 cut(s) 307, 559, 649, 967, 1331, 1481
PspGI CCWGG 6 cut(s) 307, 559, 649, 967, 1331, 1481
PspN4I GGNNCC 3 cut(s) 189, 1430, 1569
PspPI GGNCC 2 cut(s) 305, 1429
PspXI VCTCGAGB 1 cut(s) 962
PstI CTGCAG 2 cut(s) 925, 1246
PsuI RGATCY 3 cut(s) 135, 751, 1525
RsaI GTAC 6 cut(s) 363, 402, 958, 1034, 1078, 1221
RsaNI GTAC 6 cut(s) 362, 401, 957, 1033, 1077, 1220
SaqAI TTAA 5 cut(s) 117, 150, 824, 992, 1490
SatI GCNGC 4 cut(s) 159, 921, 1185, 1574
Sau3AI GATC 8 cut(s) 21, 51, 83, 135, 349, 751, 1467, 1525
Sau96I GGNCC 2 cut(s) 305, 1429
ScaI AGTACT 1 cut(s) 1221
ScrFI CCNGG 8 cut(s) 212, 309, 561, 651, 969, 1037, 1333, 1483
SduI GDGCHC 2 cut(s) 846, 1050
SfaNI GCATC 3 cut(s) 170, 586, 1384
SfcI CTRYAG 2 cut(s) 921, 1242
Sfr274I CTCGAG 1 cut(s) 962
SinI GGWCC 2 cut(s) 305, 1429
SlaI CTCGAG 1 cut(s) 962
SmiI ATTTAAAT 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 578, 962, 1171
SmoI CTYRAG 3 cut(s) 578, 962, 1171
SsiI CCGC 4 cut(s) 158, 452, 1185, 1571
StyD4I CCNGG 8 cut(s) 210, 307, 559, 649, 967, 1035, 1331, 1481
StyI CCWWGG 2 cut(s) 250, 714
SwaI ATTTAAAT 1 cut(s) 825
TaaI ACNGT 5 cut(s) 339, 662, 882, 889, 1234
TaiI ACGT 1 cut(s) 778
TaqI TCGA 5 cut(s) 239, 324, 963, 1104, 1419
TatI WGTACW 4 cut(s) 361, 400, 956, 1219
TauI GCSGC 2 cut(s) 161, 1187
TfiI GAWTC 7 cut(s) 42, 224, 315, 420, 1354, 1366, 1589
Tru1I TTAA 5 cut(s) 117, 150, 824, 992, 1490
Tru9I TTAA 5 cut(s) 117, 150, 824, 992, 1490
TscAI CASTG 4 cut(s) 344, 430, 667, 957
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 2 cut(s) 920, 1573
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 9 cut(s) 168, 477, 760, 844, 919, 921, 1319, 1372, 1419
TspGWI ACGGA 1 cut(s) 1574
TspRI CASTG 4 cut(s) 344, 430, 667, 957
VneI GTGCAC 1 cut(s) 1046
VpaK11BI GGWCC 2 cut(s) 305, 1429
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 5 cut(s) 233, 279, 564, 894, 945
XcmI CCANNNNNNNNNTGG 2 cut(s) 1439, 1489
XhoI CTCGAG 1 cut(s) 962
XmnI GAANNNNTTC 1 cut(s) 912
ZrmI AGTACT 1 cut(s) 1221
Zsp2I ATGCAT 1 cut(s) 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.