Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003590

Physical Location & Seq

Genomic Coordinates Forward (+)

7795229 .. 7798455

Gene Structure 3227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11520.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGTCTTGTCTTCACTCAAATTCTCTAAACTGACCCTTGGCACAGTGGCTCCACAATTCACAGGAGTTTCAATCGTTGAAGGTGAAAGTGAGGCAGGAGGAATCACTATGGAGTTGGAGGTTCAGTGGGATGGTAATCCAAACATTGTGCTTGATATTAAAACCAGAGTTGGTCTTGCACTACCTGTACAGGTGAAAAATATTGGATTCACTGGGGTTTTCAGGTTAATCTTCAAACCACTAGTCGGCGACTTCCCTTGTTTTGGAGCTGTTTGTTATTCCTTAAGAGAAAAGAAAAAGCTGGATTTTGTATTTAAAATTTCTGGTGGTGATATATCATCTATTCCCGGCGTTTCTGATGCTATTGAGGAAACGATACGAGATGCTATTGAAGATTGTATAACTTGGCCAGTACGTAATATTATACCGATAATACCTGGAGATTATAGTGCCTTGGAGTTGAAGCCAGTCGGAATGTTAGATGTGAAGCTTGTGGAAGCTAAGGAGTTGACAAACAAGGACCTTGTTGGAAAATCAGATCCTTTTGCTGTCATATTCATACGTCCACTTCGTGACAGAATGAAAACCAGCAAAGTCATTGACAACGATTTGAATCCAATCTGGAATGAGCACTTTGAGTTCATTGTTGAAGATACATCGACTCAAAACTTGACGATAAGAGTTTTTGACGACGAAGGACTTCAGGCTGCAGAGCTCATTGGCTGTGCTCAAGTGCAACTGAGTCAGCTTGAGCCTGGTAAAGTGAAGGATCTGTGGTTAAAGTTGGTGAAGGATTTGGAGATCCAGAGAGATGCTAAATACAGGGGTCAGGTGCACTTGGAGCTGTTATACTGTCCTTTTGGTACAGACGGTAACATCGTAGGCCCGTTCGACCACGACTTTGCGTTGACCTCTTTGGAAAAGGCTCTTAAGATTGAACCCAGTGGAGCAGATAACTTAGAAAAAATGAAAAAAGCAGCTGCCCAGAAGAAGAAGGATGTGTTTGTGAGAGGAGTGCTATCTGTCACAGTGATATCTGCAGAAGACTTACCAGTTGTGGATTTTATGGGGAAGGCCGACCCTTTTGTTGTTCTTATTATGAAGAAATCTGAAGCCAAAGCCAAAACTAGGGTTGTAATGAACAATTTGAATCCAGTTTGGAATCAAACATTTGACTTCATGGTGGAGGATGCATTGCATGAAATGTTAATGGTTGAAGTTTGGGACCATGACACTTTTGGAAAGGATAGAATAGGAAGAGTTATCATGACACTAACCAGGGTGTTGATGGAAGGGGAATATCAAGACTGTTATCAGCTAGACATTGCTAAATCTGGAAGGATTTATTTGAACCTCAAGTGGGTTGCACAACATAAAGTCCGTGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

464

Amino Acids

51.88

Weight (kDa)

5.27

Isoelectric Point (pI)

22.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05500 AT1G05500
fragaria_vesca	FvH4_1g02450 FvH4_1g02450 FvH4_2g28810
malus_domestica	MD02G1021500.v1.1 MD15G1128000.v1.1 MD15G1164400.v1.1
prunus_persica	Prupe.1G483300_v2.0.a1 Prupe.7G250200_v2.0.a1 Prupe.7G250200_v2.0.a1
pyrus_communis	pycom02g01890 pycom15g11520 pycom15g14750
rosa_chinensis	RchiOBHm_Chr2g0087411 RchiOBHm_Chr6g0297561
rosa_laevigata	RLG00000011583 RLG00000015864
rosa_multiflora	Rmu_sc0006064.1_g000008 Rmu_ssc0000319.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153570 Rroxscaffold_7G00170360
rosa_rugosa	Rorug01G0475100 Rorug06G0273600
rosa_samantha	Rh2AG028500 Rh2BG028400 Rh2CG028800 Rh2DG028600 Rh3AG112600 Rh6AG384600 Rh6BG392700 Rh6CG398500 Rh6DG385100
rosa_wichuraiana	Rw2G002270 Rw6G033500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	533, 777, 796
AcoI	YGGCCR	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	20, 318
AcuI	CTGAAG	2 cut(s)	686, 1131
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	3 cut(s)	189, 414, 865
AfiI	CCNNNNNNNGG	4 cut(s)	245, 263, 1128, 1360
AflII	CTTAAG	2 cut(s)	283, 929
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	436, 754, 1277
AluBI	AGCT	9 cut(s)	269, 301, 490, 500, 715, 748, 844, 980, 1318
AluI	AGCT	9 cut(s)	269, 301, 490, 500, 715, 748, 844, 980, 1318
Alw21I	GWGCWC	4 cut(s)	633, 717, 730, 837
Alw44I	GTGCAC	1 cut(s)	833
AlwI	GGATC	3 cut(s)	533, 777, 796
AoxI	GGCC	3 cut(s)	407, 883, 1074
ApaLI	GTGCAC	1 cut(s)	833
ApeKI	GCWGC	3 cut(s)	707, 977, 980
ApoI	RAATTY	2 cut(s)	20, 318
ArsI	GACNNNNNNTTYG	4 cut(s)	228, 260, 884, 916
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	3 cut(s)	520, 884, 1225
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	4 cut(s)	95, 205, 341, 799
AvaII	GGWCC	2 cut(s)	520, 1225
BaeGI	GKGCMC	1 cut(s)	837
BalI	TGGCCA	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	717
BbsI	GAAGAC	2 cut(s)	3, 1050
Bbv12I	GWGCWC	4 cut(s)	633, 717, 730, 837
BbvI	GCAGC	3 cut(s)	694, 967, 989
BccI	CCATC	2 cut(s)	125, 1282
BciT130I	CCWGG	3 cut(s)	438, 756, 1279
BcnI	CCSGG	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	3 cut(s)	242, 1128, 1319
BfmI	CTRYAG	2 cut(s)	708, 1038
BfrI	CTTAAG	2 cut(s)	283, 929
BisI	GCNGC	3 cut(s)	708, 978, 981
BlsI	GCNGC	3 cut(s)	709, 979, 982
Bme1390I	CCNGG	4 cut(s)	348, 438, 756, 1279
Bme18I	GGWCC	2 cut(s)	520, 1225
BmgT120I	GGNCC	3 cut(s)	520, 884, 1225
BmiI	GGNNCC	2 cut(s)	51, 1226
BmrFI	CCNGG	4 cut(s)	348, 438, 756, 1279
BmrI	ACTGGG	2 cut(s)	222, 936
BmsI	GCATC	4 cut(s)	349, 373, 802, 1180
BmuI	ACTGGG	2 cut(s)	222, 936
BpiI	GAAGAC	2 cut(s)	3, 1050
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	3 cut(s)	714, 770, 1340
BpuMI	CCSGG	1 cut(s)	348
BsaAI	YACGTR	2 cut(s)	416, 1389
BsaBI	GATNNNNATC	2 cut(s)	135, 612
BsaJI	CCNNGG	3 cut(s)	37, 453, 1278
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 263, 1128, 1360
Bse1I	ACTGG	6 cut(s)	217, 410, 467, 942, 1052, 1154
Bse3DI	GCAATG	2 cut(s)	1193, 1323
Bse8I	GATNNNNATC	2 cut(s)	135, 612
BseBI	CCWGG	3 cut(s)	438, 756, 1279
BseDI	CCNNGG	3 cut(s)	37, 453, 1278
BseGI	GGATG	3 cut(s)	136, 1003, 1195
BseJI	GATNNNNATC	2 cut(s)	135, 612
BseLI	CCNNNNNNNGG	4 cut(s)	245, 263, 1128, 1360
BseMI	GCAATG	2 cut(s)	1193, 1323
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	6 cut(s)	217, 410, 467, 942, 1052, 1154
BseRI	GAGGAG	1 cut(s)	1026
BseSI	GKGCMC	1 cut(s)	837
BseXI	GCAGC	3 cut(s)	694, 967, 989
BshFI	GGCC	3 cut(s)	409, 885, 1076
BsiHKAI	GWGCWC	4 cut(s)	633, 717, 730, 837
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	1238
BslI	CCNNNNNNNGG	4 cut(s)	245, 263, 1128, 1360
BsmFI	GGGAC	1 cut(s)	1238
BsnI	GGCC	3 cut(s)	409, 885, 1076
Bsp1286I	GDGCHC	4 cut(s)	633, 717, 730, 837
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	538, 769, 801
BspANI	GGCC	3 cut(s)	409, 885, 1076
BspCNI	CTCAG	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	1266
BspLI	GGNNCC	2 cut(s)	51, 1226
BspMAI	CTGCAG	2 cut(s)	712, 1042
BspPI	GGATC	3 cut(s)	533, 777, 796
BspTI	CTTAAG	2 cut(s)	283, 929
BsrDI	GCAATG	2 cut(s)	1193, 1323
BsrGI	TGTACA	1 cut(s)	187
BsrI	ACTGG	6 cut(s)	217, 410, 467, 942, 1052, 1154
BssECI	CCNNGG	3 cut(s)	37, 453, 1278
BssMI	GATC	3 cut(s)	538, 769, 801
BssT1I	CCWWGG	2 cut(s)	37, 453
Bst2UI	CCWGG	3 cut(s)	438, 756, 1279
Bst4CI	ACNGT	5 cut(s)	46, 854, 872, 1030, 1310
Bst6I	CTCTTC	1 cut(s)	1252
BstAFI	CTTAAG	2 cut(s)	283, 929
BstAUI	TGTACA	1 cut(s)	187
BstBAI	YACGTR	2 cut(s)	416, 1389
BstDEI	CTNAG	3 cut(s)	501, 740, 958
BstF5I	GGATG	3 cut(s)	136, 1003, 1195
BstKTI	GATC	3 cut(s)	541, 772, 804
BstMBI	GATC	3 cut(s)	538, 769, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	3 cut(s)	438, 756, 1279
BstSCI	CCNGG	4 cut(s)	346, 436, 754, 1277
BstSFI	CTRYAG	2 cut(s)	708, 1038
BstSLI	GKGCMC	1 cut(s)	837
BstSNI	TACGTA	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	694, 967, 989
BstV2I	GAAGAC	2 cut(s)	3, 1050
BstX2I	RGATCY	3 cut(s)	538, 769, 801
BstYI	RGATCY	3 cut(s)	538, 769, 801
BsuRI	GGCC	3 cut(s)	409, 885, 1076
BtsCI	GGATG	3 cut(s)	136, 1003, 1195
BtsIMutI	CAGTG	5 cut(s)	51, 131, 210, 949, 1035
CciI	TCATGA	1 cut(s)	1266
Cfr13I	GGNCC	3 cut(s)	520, 884, 1225
Csp6I	GTAC	3 cut(s)	188, 413, 864
CviAII	CATG	4 cut(s)	1180, 1199, 1229, 1267
CviQI	GTAC	3 cut(s)	188, 413, 864
DdeI	CTNAG	3 cut(s)	501, 740, 958
DpnI	GATC	3 cut(s)	540, 771, 803
DpnII	GATC	3 cut(s)	538, 769, 801
DraI	TTTAAA	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	1252
EarI	CTCTTC	1 cut(s)	1252
Ecl136II	GAGCTC	1 cut(s)	715
Eco105I	TACGTA	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	37, 453
Eco24I	GRGCYC	1 cut(s)	717
Eco32I	GATATC	1 cut(s)	1035
Eco47I	GGWCC	2 cut(s)	520, 1225
Eco53kI	GAGCTC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	686, 1131
EcoICRI	GAGCTC	1 cut(s)	715
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	436, 754, 1277
EcoRV	GATATC	1 cut(s)	1035
EcoT14I	CCWWGG	2 cut(s)	37, 453
EcoT22I	ATGCAT	1 cut(s)	1195
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	2 cut(s)	37, 453
FaeI	CATG	4 cut(s)	1183, 1202, 1232, 1270
FaqI	GGGAC	1 cut(s)	1238
FatI	CATG	4 cut(s)	1179, 1198, 1228, 1266
Fnu4HI	GCNGC	3 cut(s)	708, 978, 981
FokI	GGATG	3 cut(s)	143, 1010, 1202
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	3 cut(s)	708, 978, 981
FspBI	CTAG	3 cut(s)	242, 1128, 1319
GluI	GCNGC	3 cut(s)	708, 978, 981
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	409, 885, 1076
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	4 cut(s)	1183, 1202, 1232, 1270
HincII	GTYRAC	2 cut(s)	510, 909
HindII	GTYRAC	2 cut(s)	510, 909
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	7 cut(s)	102, 207, 613, 661, 742, 1150, 1162
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	4 cut(s)	95, 205, 341, 799
Hpy166II	GTNNAC	4 cut(s)	510, 566, 835, 909
Hpy188I	TCNGA	4 cut(s)	358, 473, 538, 1111
Hpy188III	TCNNGA	6 cut(s)	572, 622, 805, 1267, 1304, 1335
Hpy8I	GTNNAC	4 cut(s)	510, 566, 835, 909
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	8 cut(s)	74, 689, 760, 784, 988, 1066, 1286, 1332
HpyCH4III	ACNGT	5 cut(s)	46, 854, 872, 1030, 1310
HpyCH4IV	ACGT	3 cut(s)	415, 562, 1388
HpyCH4V	TGCA	8 cut(s)	179, 710, 736, 835, 1040, 1193, 1198, 1367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	3 cut(s)	501, 740, 958
HpySE526I	ACGT	3 cut(s)	415, 562, 1388
Hsp92II	CATG	4 cut(s)	1183, 1202, 1232, 1270
Kzo9I	GATC	3 cut(s)	538, 769, 801
LmnI	GCTCC	4 cut(s)	55, 266, 841, 947
Lsp1109I	GCAGC	3 cut(s)	694, 967, 989
LweI	GCATC	4 cut(s)	349, 373, 802, 1180
MaeI	CTAG	3 cut(s)	242, 1128, 1319
MaeII	ACGT	3 cut(s)	415, 562, 1388
MaeIII	GTNAC	3 cut(s)	572, 872, 1024
MalI	GATC	3 cut(s)	540, 771, 803
MboI	GATC	3 cut(s)	538, 769, 801
MboII	GAAGA	9 cut(s)	3, 223, 404, 662, 1000, 1003, 1055, 1114, 1269
MflI	RGATCY	3 cut(s)	538, 769, 801
MhlI	GDGCHC	4 cut(s)	633, 717, 730, 837
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	4 cut(s)	20, 56, 318, 1144
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	2 cut(s)	655, 751
MmeI	TCCRAC	3 cut(s)	96, 451, 508
MnlI	CCTC	8 cut(s)	85, 92, 112, 361, 922, 1004, 1180, 1364
Mox20I	TGGCCA	1 cut(s)	409
Mph1103I	ATGCAT	1 cut(s)	1195
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	7 cut(s)	159, 227, 284, 315, 779, 930, 1208
Msp20I	TGGCCA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	980
MspCI	CTTAAG	2 cut(s)	283, 929
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	4 cut(s)	348, 438, 756, 1279
MvaI	CCWGG	3 cut(s)	438, 756, 1279
MwoI	GCNNNNNNNGC	1 cut(s)	841
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	538, 769, 801
NlaIII	CATG	4 cut(s)	1183, 1202, 1232, 1270
NlaIV	GGNNCC	2 cut(s)	51, 1226
NmuCI	GTSAC	2 cut(s)	572, 1024
NsiI	ATGCAT	1 cut(s)	1195
PagI	TCATGA	1 cut(s)	1266
PcsI	WCGNNNNNNNCGW	2 cut(s)	568, 876
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	5 cut(s)	102, 207, 613, 1150, 1162
PkrI	GCNGC	3 cut(s)	709, 979, 982
PleI	GAGTC	2 cut(s)	655, 750
PpsI	GAGTC	2 cut(s)	655, 750
Ppu21I	YACGTR	2 cut(s)	416, 1389
PpuMI	RGGWCCY	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	436, 754, 1277
PspGI	CCWGG	3 cut(s)	436, 754, 1277
PspN4I	GGNNCC	2 cut(s)	51, 1226
PspPI	GGNCC	3 cut(s)	520, 884, 1225
PspPPI	RGGWCCY	1 cut(s)	520
PstI	CTGCAG	2 cut(s)	712, 1042
PsuI	RGATCY	3 cut(s)	538, 769, 801
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	189, 414, 865
RsaNI	GTAC	3 cut(s)	188, 413, 864
SacI	GAGCTC	1 cut(s)	717
SaqAI	TTAA	7 cut(s)	159, 227, 284, 315, 779, 930, 1208
SatI	GCNGC	3 cut(s)	708, 978, 981
Sau3AI	GATC	3 cut(s)	538, 769, 801
Sau96I	GGNCC	3 cut(s)	520, 884, 1225
SchI	GAGTC	2 cut(s)	655, 751
ScrFI	CCNGG	4 cut(s)	348, 438, 756, 1279
SduI	GDGCHC	4 cut(s)	633, 717, 730, 837
SfaNI	GCATC	4 cut(s)	349, 373, 802, 1180
SfcI	CTRYAG	2 cut(s)	708, 1038
SinI	GGWCC	2 cut(s)	520, 1225
SmlI	CTYRAG	5 cut(s)	283, 729, 749, 929, 1355
SmoI	CTYRAG	5 cut(s)	283, 729, 749, 929, 1355
SnaBI	TACGTA	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	4 cut(s)	20, 56, 318, 1144
SspI	AATATT	2 cut(s)	202, 421
SspMI	CTAG	3 cut(s)	242, 1128, 1319
SstI	GAGCTC	1 cut(s)	717
StyD4I	CCNGG	4 cut(s)	346, 436, 754, 1277
StyI	CCWWGG	2 cut(s)	37, 453
TaaI	ACNGT	5 cut(s)	46, 854, 872, 1030, 1310
TaiI	ACGT	3 cut(s)	418, 565, 1391
TaqI	TCGA	2 cut(s)	659, 891
TasI	AATT	4 cut(s)	20, 56, 318, 1144
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	5 cut(s)	102, 207, 613, 1150, 1162
Tru1I	TTAA	7 cut(s)	159, 227, 284, 315, 779, 930, 1208
Tru9I	TTAA	7 cut(s)	159, 227, 284, 315, 779, 930, 1208
TscAI	CASTG	5 cut(s)	51, 131, 217, 949, 1035
TseFI	GTSAC	2 cut(s)	572, 1024
TseI	GCWGC	3 cut(s)	707, 977, 980
Tsp45I	GTSAC	2 cut(s)	572, 1024
TspDTI	ATGAA	8 cut(s)	547, 596, 631, 983, 1115, 1154, 1168, 1215
TspGWI	ACGGA	1 cut(s)	1370
TspRI	CASTG	5 cut(s)	51, 131, 217, 949, 1035
Vha464I	CTTAAG	2 cut(s)	283, 929
VneI	GTGCAC	1 cut(s)	833
VpaK11BI	GGWCC	2 cut(s)	520, 1225
XapI	RAATTY	2 cut(s)	20, 318
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1235, 1285
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	3 cut(s)	242, 1128, 1319
Zsp2I	ATGCAT	1 cut(s)	1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.