Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000319.1

Orthogroup ID

OG0003590

Physical Location & Seq

Genomic Coordinates Reverse (-)

15910 .. 21133

Gene Structure 5224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000319.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

atggggttcttctttggactgctcgtcggcattgccatcggaattgggttgatcatggcttttgctcggagcgagagtaggcgatccaaacgtcgctctgaattggcagcatcggagctgataaggagcaatgtggaaccaatactcaaacaatataccccggctgccttggattcactcaaattctccacattaaccctgggcactgtggctccacaatttacaggaatttcccttgttgaaagtgaatgtggagctgggggagtcactatggagtttgagatacaatgggatggtgatccagatattgtaattgatatcaatacccatgttggtcttgcactacctgtacagaaaaagctggactttgtgtttaaagtctcaggtagtgaaatatcagcaattccaggagtttccgaggctcttgaggaaacaatacgagatgctattgaagattgtattacttggccagttcgtaacattattcccattgtacctggcgattacagtgacttggagttgaagcccgttggaacattagaagtgaagcttgtagaagccaaggagttaacgaataaggacatagtaggaaaatcagatccttttgctgtgattttcatacgtccacttcctgacagaacaaaaaccagcaaagttattgacaacgatttaaacccaatatggaatgagcactatgagttcatagttgaagatcaatcaactcaacgcttgacagtaagaattttcgatgatgaaggacttcaggctgcagaattcattggctgttgtcaaattccactgagttcgcttgagcctggtaaagtgaaggatgtgtggttaaaacttttgaaggatttggagatccagagagataccaagtaccggggtcaggtgcacttggagctgttatactgcccttatggtacagatgggaacattgtaaacccgttcatttggagatccagagagataccaagtaccggggtgcacttggagctgttatactgcccttatggtacagatgggaacattgtaaacccgtttgaccatgacttctccttgacctctttggaaaaggctttgaagattgaaaatataacaaaagcagagttgagaaaaatatctaccaagaagaagaaggaaatgtttataagaggagtactatctgtaacagttatatctgcagaagacctaccaatagtagattttatggggaaggcagacccgtatgttgtccttgttttgaagaaatctgaagcaaagcaaaagaccagggtcataacgaacaacttgaatccagtttggaatcagacatttgacttcatggtggaggatgcattacatgaaatgttaattgtcgaagtttgggaccatgacacttttgggaaggatagaatagggagagtgatcatgacactcaccagggtcttaatggaaggagaatatcaggaatgctatcccatagacattgccaaatctggaaggattactctgagtctcaaatgggttgcgcagcataaagtccgtgattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

511

Amino Acids

57.46

Weight (kDa)

5.2

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05500 AT1G05500
fragaria_vesca	FvH4_1g02450 FvH4_1g02450 FvH4_2g28810
malus_domestica	MD02G1021500.v1.1 MD15G1128000.v1.1 MD15G1164400.v1.1
prunus_persica	Prupe.1G483300_v2.0.a1 Prupe.7G250200_v2.0.a1 Prupe.7G250200_v2.0.a1
pyrus_communis	pycom02g01890 pycom15g11520 pycom15g14750
rosa_chinensis	RchiOBHm_Chr2g0087411 RchiOBHm_Chr6g0297561
rosa_laevigata	RLG00000011583 RLG00000015864
rosa_multiflora	Rmu_sc0006064.1_g000008 Rmu_ssc0000319.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153570 Rroxscaffold_7G00170360
rosa_rugosa	Rorug01G0475100 Rorug06G0273600
rosa_samantha	Rh2AG028500 Rh2BG028400 Rh2CG028800 Rh2DG028600 Rh3AG112600 Rh6AG384600 Rh6BG392700 Rh6CG398500 Rh6DG385100
rosa_wichuraiana	Rw2G002270 Rw6G033500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1151
Acc16I	TGCGCA	1 cut(s)	1512
AclWI	GGATC	5 cut(s)	78, 293, 593, 856, 954
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	5 cut(s)	182, 228, 741, 773, 792
AcuI	CTGAAG	2 cut(s)	746, 1275
AfaI	GTAC	7 cut(s)	351, 495, 881, 925, 979, 1018, 1161
AfiI	CCNNNNNNNGG	3 cut(s)	882, 889, 980
AgsI	TTSAA	9 cut(s)	242, 452, 523, 710, 850, 1084, 1091, 1246, 1294
AhdI	GACNNNNNGTC	1 cut(s)	23
AjnI	CCWGG	6 cut(s)	198, 406, 496, 814, 1271, 1421
AluBI	AGCT	6 cut(s)	118, 257, 361, 550, 904, 997
AluI	AGCT	6 cut(s)	118, 257, 361, 550, 904, 997
Alw21I	GWGCWC	3 cut(s)	693, 897, 990
Alw26I	GTCTC	2 cut(s)	385, 1502
Alw44I	GTGCAC	2 cut(s)	893, 986
AlwI	GGATC	5 cut(s)	78, 293, 593, 856, 954
AoxI	GGCC	1 cut(s)	467
ApaLI	GTGCAC	2 cut(s)	893, 986
ApeKI	GCWGC	4 cut(s)	107, 164, 767, 1513
ApoI	RAATTY	5 cut(s)	182, 228, 741, 773, 792
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	1513
AspS9I	GGNCC	1 cut(s)	1369
AsuC2I	CCSGG	3 cut(s)	161, 884, 982
AsuHPI	GGTGA	2 cut(s)	308, 1411
AvaII	GGWCC	1 cut(s)	1369
BaeGI	GKGCMC	3 cut(s)	206, 897, 990
BalI	TGGCCA	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	1194
Bbv12I	GWGCWC	3 cut(s)	693, 897, 990
BbvI	GCAGC	4 cut(s)	119, 151, 754, 1525
BccI	CCATC	4 cut(s)	44, 287, 923, 1016
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	6 cut(s)	200, 408, 498, 816, 1273, 1423
BclI	TGATCA	2 cut(s)	51, 1407
BcnI	CCSGG	3 cut(s)	161, 884, 982
BcoDI	GTCTC	2 cut(s)	385, 1502
BfmI	CTRYAG	2 cut(s)	768, 1182
BisI	GCNGC	4 cut(s)	108, 165, 768, 1514
BlsI	GCNGC	4 cut(s)	109, 166, 769, 1515
BmcAI	AGTACT	1 cut(s)	1161
Bme1390I	CCNGG	9 cut(s)	161, 200, 408, 498, 816, 884, 982, 1273, 1423
Bme18I	GGWCC	1 cut(s)	1369
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	1369
BmiI	GGNNCC	3 cut(s)	138, 213, 1370
BmrFI	CCNGG	9 cut(s)	161, 200, 408, 498, 816, 884, 982, 1273, 1423
BmsI	GCATC	3 cut(s)	119, 433, 1324
BoxI	GACNNNNGTC	1 cut(s)	1274
BpiI	GAAGAC	1 cut(s)	1194
BpuEI	CTTGAG	2 cut(s)	446, 830
BpuMI	CCSGG	3 cut(s)	161, 884, 982
BsaBI	GATNNNNATC	1 cut(s)	297
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 196, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	882, 889, 980
Bse1I	ACTGG	2 cut(s)	470, 1298
Bse3DI	GCAATG	3 cut(s)	30, 136, 1467
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	6 cut(s)	200, 408, 498, 816, 1273, 1423
BseGI	GGATG	3 cut(s)	298, 835, 1339
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	882, 889, 980
BseMI	GCAATG	3 cut(s)	30, 136, 1467
BseMII	CTCAG	3 cut(s)	396, 791, 1484
BseNI	ACTGG	2 cut(s)	470, 1298
BseRI	GAGGAG	1 cut(s)	1170
BseSI	GKGCMC	3 cut(s)	206, 897, 990
BseXI	GCAGC	4 cut(s)	119, 151, 754, 1525
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	1 cut(s)	469
BsiHKAI	GWGCWC	3 cut(s)	693, 897, 990
BsiSI	CCGG	3 cut(s)	161, 883, 981
BslFI	GGGAC	1 cut(s)	1382
BslI	CCNNNNNNNGG	3 cut(s)	882, 889, 980
BsmAI	GTCTC	2 cut(s)	385, 1502
BsmFI	GGGAC	1 cut(s)	1382
BsmI	GAATGC	1 cut(s)	1457
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	4 cut(s)	206, 693, 897, 990
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	3 cut(s)	395, 792, 1485
BspHI	TCATGA	1 cut(s)	1410
BspLI	GGNNCC	3 cut(s)	138, 213, 1370
BspMAI	CTGCAG	2 cut(s)	772, 1186
BspPI	GGATC	5 cut(s)	78, 293, 593, 856, 954
BsrDI	GCAATG	3 cut(s)	30, 136, 1467
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	470, 1298
BssMI	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
BssT1I	CCWWGG	2 cut(s)	168, 561
Bst2UI	CCWGG	6 cut(s)	200, 408, 498, 816, 1273, 1423
Bst4CI	ACNGT	4 cut(s)	208, 509, 736, 1174
BstAUI	TGTACA	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	382, 800, 1493
BstF5I	GGATG	3 cut(s)	298, 835, 1339
BstHHI	GCGC	1 cut(s)	1513
BstKTI	GATC	8 cut(s)	54, 86, 301, 601, 715, 864, 962, 1410
BstMAI	GTCTC	2 cut(s)	385, 1502
BstMBI	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
BstMWI	GCNNNNNNNGC	2 cut(s)	901, 994
BstNI	CCWGG	6 cut(s)	200, 408, 498, 816, 1273, 1423
BstPAI	GACNNNNGTC	1 cut(s)	1274
BstSCI	CCNGG	9 cut(s)	159, 198, 406, 496, 814, 882, 980, 1271, 1421
BstSFI	CTRYAG	2 cut(s)	768, 1182
BstSLI	GKGCMC	3 cut(s)	206, 897, 990
BstV1I	GCAGC	4 cut(s)	119, 151, 754, 1525
BstV2I	GAAGAC	1 cut(s)	1194
BstX2I	RGATCY	3 cut(s)	598, 861, 959
BstYI	RGATCY	3 cut(s)	598, 861, 959
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	298, 835, 1339
BtsIMutI	CAGTG	3 cut(s)	204, 514, 797
CciI	TCATGA	1 cut(s)	1410
CfoI	GCGC	1 cut(s)	1513
Cfr13I	GGNCC	1 cut(s)	1369
Csp6I	GTAC	7 cut(s)	350, 494, 880, 924, 978, 1017, 1160
CviAII	CATG	7 cut(s)	55, 329, 1049, 1324, 1343, 1373, 1411
CviQI	GTAC	7 cut(s)	350, 494, 880, 924, 978, 1017, 1160
DdeI	CTNAG	3 cut(s)	382, 800, 1493
DpnI	GATC	8 cut(s)	53, 85, 300, 600, 714, 863, 961, 1409
DpnII	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
DraI	TTTAAA	2 cut(s)	376, 672
DriI	GACNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	467
Eam1105I	GACNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	168, 561
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	1369
Eco57I	CTGAAG	2 cut(s)	746, 1275
EcoRI	GAATTC	1 cut(s)	773
EcoRII	CCWGG	6 cut(s)	198, 406, 496, 814, 1271, 1421
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	168, 561
EcoT22I	ATGCAT	1 cut(s)	1339
ErhI	CCWWGG	2 cut(s)	168, 561
FaeI	CATG	7 cut(s)	58, 332, 1052, 1327, 1346, 1376, 1414
FalI	AAGNNNNNCTT	4 cut(s)	350, 382, 534, 566
FaqI	GGGAC	1 cut(s)	1382
FatI	CATG	7 cut(s)	54, 328, 1048, 1323, 1342, 1372, 1410
FbaI	TGATCA	2 cut(s)	51, 1407
Fnu4HI	GCNGC	4 cut(s)	108, 165, 768, 1514
FokI	GGATG	3 cut(s)	305, 842, 1346
Fsp4HI	GCNGC	4 cut(s)	108, 165, 768, 1514
FspI	TGCGCA	1 cut(s)	1512
GlaI	GCGC	1 cut(s)	1512
GluI	GCNGC	4 cut(s)	108, 165, 768, 1514
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	3 cut(s)	161, 883, 981
HhaI	GCGC	1 cut(s)	1513
Hin1II	CATG	7 cut(s)	58, 332, 1052, 1327, 1346, 1376, 1414
Hin6I	GCGC	1 cut(s)	1511
HinP1I	GCGC	1 cut(s)	1511
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	6 cut(s)	173, 264, 1294, 1306, 1495, 1529
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	3 cut(s)	161, 883, 981
HphI	GGTGA	2 cut(s)	308, 1411
Hpy166II	GTNNAC	6 cut(s)	570, 626, 895, 943, 988, 1036
Hpy188I	TCNGA	9 cut(s)	41, 69, 100, 115, 418, 598, 1255, 1311, 1494
Hpy188III	TCNNGA	9 cut(s)	302, 425, 632, 865, 963, 1411, 1448, 1479, 1533
Hpy8I	GTNNAC	6 cut(s)	570, 626, 895, 943, 988, 1036
Hpy99I	CGWCG	2 cut(s)	29, 96
HpyAV	CCTTC	8 cut(s)	749, 820, 844, 1132, 1210, 1381, 1430, 1476
HpyCH4III	ACNGT	4 cut(s)	208, 509, 736, 1174
HpyCH4IV	ACGT	2 cut(s)	91, 622
HpyCH4V	TGCA	6 cut(s)	341, 770, 895, 988, 1184, 1337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	901, 994
HpyF3I	CTNAG	3 cut(s)	382, 800, 1493
HpySE526I	ACGT	2 cut(s)	91, 622
Hsp92II	CATG	7 cut(s)	58, 332, 1052, 1327, 1346, 1376, 1414
HspAI	GCGC	1 cut(s)	1511
Ksp22I	TGATCA	2 cut(s)	51, 1407
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
LmnI	GCTCC	7 cut(s)	69, 115, 126, 217, 254, 901, 994
Lsp1109I	GCAGC	4 cut(s)	119, 151, 754, 1525
LweI	GCATC	3 cut(s)	119, 433, 1324
MaeII	ACGT	2 cut(s)	91, 622
MaeIII	GTNAC	4 cut(s)	265, 476, 509, 1168
MalI	GATC	8 cut(s)	53, 85, 300, 600, 714, 863, 961, 1409
MboI	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
MboII	GAAGA	7 cut(s)	464, 722, 1096, 1144, 1147, 1199, 1258
MflI	RGATCY	3 cut(s)	598, 861, 959
MhlI	GDGCHC	4 cut(s)	206, 693, 897, 990
MlsI	TGGCCA	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	273, 1504
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	5 cut(s)	412, 421, 1075, 1148, 1324
Mox20I	TGGCCA	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	1339
MroXI	GAANNNNTTC	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	7 cut(s)	194, 375, 569, 671, 839, 1352, 1430
Msp20I	TGGCCA	1 cut(s)	469
MspI	CCGG	3 cut(s)	161, 883, 981
MspR9I	CCNGG	9 cut(s)	161, 200, 408, 498, 816, 884, 982, 1273, 1423
Mva1269I	GAATGC	1 cut(s)	1457
MvaI	CCWGG	6 cut(s)	200, 408, 498, 816, 1273, 1423
MwoI	GCNNNNNNNGC	2 cut(s)	901, 994
NciI	CCSGG	3 cut(s)	161, 884, 982
NdeII	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
NlaIII	CATG	7 cut(s)	58, 332, 1052, 1327, 1346, 1376, 1414
NlaIV	GGNNCC	3 cut(s)	138, 213, 1370
NmuCI	GTSAC	2 cut(s)	265, 509
NsbI	TGCGCA	1 cut(s)	1512
NsiI	ATGCAT	1 cut(s)	1339
PagI	TCATGA	1 cut(s)	1410
PasI	CCCWGGG	1 cut(s)	199
PctI	GAATGC	1 cut(s)	1457
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	4 cut(s)	173, 1294, 1306, 1529
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	109, 166, 769, 1515
PleI	GAGTC	2 cut(s)	272, 1503
PpsI	GAGTC	2 cut(s)	272, 1503
PshAI	GACNNNNGTC	1 cut(s)	1274
PsiI	TTATAA	1 cut(s)	1151
Psp6I	CCWGG	6 cut(s)	198, 406, 496, 814, 1271, 1421
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	6 cut(s)	198, 406, 496, 814, 1271, 1421
PspN4I	GGNNCC	3 cut(s)	138, 213, 1370
PspPI	GGNCC	1 cut(s)	1369
PstI	CTGCAG	2 cut(s)	772, 1186
PsuI	RGATCY	3 cut(s)	598, 861, 959
RsaI	GTAC	7 cut(s)	351, 495, 881, 925, 979, 1018, 1161
RsaNI	GTAC	7 cut(s)	350, 494, 880, 924, 978, 1017, 1160
SaqAI	TTAA	7 cut(s)	194, 375, 569, 671, 839, 1352, 1430
SatI	GCNGC	4 cut(s)	108, 165, 768, 1514
Sau3AI	GATC	8 cut(s)	51, 83, 298, 598, 712, 861, 959, 1407
Sau96I	GGNCC	1 cut(s)	1369
ScaI	AGTACT	1 cut(s)	1161
SchI	GAGTC	2 cut(s)	273, 1504
ScrFI	CCNGG	9 cut(s)	161, 200, 408, 498, 816, 884, 982, 1273, 1423
SduI	GDGCHC	4 cut(s)	206, 693, 897, 990
SfaNI	GCATC	3 cut(s)	119, 433, 1324
SfcI	CTRYAG	2 cut(s)	768, 1182
SinI	GGWCC	1 cut(s)	1369
SmlI	CTYRAG	2 cut(s)	425, 809
SmoI	CTYRAG	2 cut(s)	425, 809
StyD4I	CCNGG	9 cut(s)	159, 198, 406, 496, 814, 882, 980, 1271, 1421
StyI	CCWWGG	2 cut(s)	168, 561
TaaI	ACNGT	4 cut(s)	208, 509, 736, 1174
TaiI	ACGT	2 cut(s)	94, 625
TaqI	TCGA	2 cut(s)	747, 1359
TatI	WGTACW	2 cut(s)	349, 1159
TfiI	GAWTC	4 cut(s)	173, 1294, 1306, 1529
Tru1I	TTAA	7 cut(s)	194, 375, 569, 671, 839, 1352, 1430
Tru9I	TTAA	7 cut(s)	194, 375, 569, 671, 839, 1352, 1430
TscAI	CASTG	3 cut(s)	211, 514, 804
TseFI	GTSAC	2 cut(s)	265, 509
TseI	GCWGC	4 cut(s)	107, 164, 767, 1513
Tsp45I	GTSAC	2 cut(s)	265, 509
TspDTI	ATGAA	7 cut(s)	607, 691, 766, 768, 940, 1312, 1359
TspGWI	ACGGA	1 cut(s)	1514
TspRI	CASTG	3 cut(s)	211, 514, 804
VneI	GTGCAC	2 cut(s)	893, 986
VpaK11BI	GGWCC	1 cut(s)	1369
XapI	RAATTY	5 cut(s)	182, 228, 741, 773, 792
XcmI	CCANNNNNNNNNTGG	3 cut(s)	196, 1379, 1429
XmnI	GAANNNNTTC	1 cut(s)	759
ZrmI	AGTACT	1 cut(s)	1161
Zsp2I	ATGCAT	1 cut(s)	1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.