Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003590

Physical Location & Seq

Genomic Coordinates Reverse (-)

1127507 .. 1130287

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01890.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTGGCCTTATGTCAATGAGGCAGCGTCCGAGCTGATAAAGACATCCGTGGAGCCAGTTCTGGAGCAGTACAGACCAATCATATTGTCCTCACTCAAATTTTCCAAGTTCACTCTTGGTACGGTGGCACCTCAGTTTACAGGGGTTTCTATAGTTGAAGGTGGAGGTGACAGTATCATTATGGAGTTGGAAATGCAGTGGGATGGAAATCCGAGTATAATACTAGCTATCAAGACTTTAGTTGGCGTAGCACTACCGGTGCAGGTGAAAGATATTGGATTCACGGGGGTATTCAGGCTGATCTTCAAGCCTCTGGTTGACGAGTTTCCGTGCTTTGGAGCTGTTTGCTACTCATTGAGAGAAAAGAAAAAGTTAGATTTTAAGCTTAAAGTTGTGGGTGGCGACATATCTGCATTACCTGGGATATCTGATGCAATTGAGGGGACAATACGGGATGCCGTTGAAGATTCAATTACATGGCCTGTTCGGAAAGTTTTTCCCATTTTGCCAGGGGATTACAGTGATTTGGAGTTAAAGCCAGTCGGAATGCTAGAGGTGAAACTTGTGCAGGCAAAGGAGTTAACAAATAAAGACGTGGTGGGAAAATCAGATCCGTTTGCAAGACTATACATACGACCTTTACCCAACAGAATGAAAAGAAGCAAAACCATTAACAATGATTTGAATCCAATCTGGAATGAGCACTTTGAATTTATTGTTGAAGATGAATCGACTCAACATTTGGTGGTTAAAGTTTATGATGATGAGGGATTTCAAGCATCTGAGCTCATTGGATGTGCTCAAGTACAACTAAGTGAGCTTCAGCCTGGTAAAGTGAAGGATGTGTGGTTGAAGCTGGTTAAAAGCTTGGACGTCCAAAGAGATAATAAAAACCGCGGGCAGGTGCATTTGGAGCTGTTGTATTGTCCATTTGGCATGGAGAATGGCTTCGCCAATCCTTTTACTTCCAACTCCGCAATGACCTCTTTGGAAAAGGTGCTTAAAAGTGGAATGAACGGAACAGATGCTACTGAAAGTGAAAAGGAAGCCGCACAGAAGAAAAGGGAGGTCATAATTAGAGGTGTACTAACTATTACTATGTCATCTGCTGAGGACTTGCCACCTGCTGATCGATCATGGGGAAGGCTGATCCTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0005911 GO:0009506 GO:0009898 GO:0012505 GO:0016020 GO:0016021 GO:0019897 GO:0019898 GO:0030054 GO:0031224 GO:0031226 GO:0031227 GO:0031234 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0055044 GO:0071944 GO:0098552 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

387

Amino Acids

42.93

Weight (kDa)

5.33

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05500 AT1G05500
fragaria_vesca	FvH4_1g02450 FvH4_1g02450 FvH4_2g28810
malus_domestica	MD02G1021500.v1.1 MD15G1128000.v1.1 MD15G1164400.v1.1
prunus_persica	Prupe.1G483300_v2.0.a1 Prupe.7G250200_v2.0.a1 Prupe.7G250200_v2.0.a1
pyrus_communis	pycom02g01890 pycom15g11520 pycom15g14750
rosa_chinensis	RchiOBHm_Chr2g0087411 RchiOBHm_Chr6g0297561
rosa_laevigata	RLG00000011583 RLG00000015864
rosa_multiflora	Rmu_sc0006064.1_g000008 Rmu_ssc0000319.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153570 Rroxscaffold_7G00170360
rosa_rugosa	Rorug01G0475100 Rorug06G0273600
rosa_samantha	Rh2AG028500 Rh2BG028400 Rh2CG028800 Rh2DG028600 Rh3AG112600 Rh6AG384600 Rh6BG392700 Rh6CG398500 Rh6DG385100
rosa_wichuraiana	Rw2G002270 Rw6G033500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	253, 892, 1132
AatII	GACGTC	1 cut(s)	876
Acc36I	ACCTGC	3 cut(s)	253, 892, 1132
AccB1I	GGYRCC	1 cut(s)	127
AccII	CGCG	1 cut(s)	897
AciI	CCGC	4 cut(s)	895, 897, 975, 1050
AclWI	GGATC	2 cut(s)	605, 1144
AcsI	RAATTY	2 cut(s)	98, 710
AcuI	CTGAAG	1 cut(s)	806
AcyI	GRCGYC	1 cut(s)	873
AfaI	GTAC	4 cut(s)	71, 121, 807, 1086
AfiI	CCNNNNNNNGG	2 cut(s)	335, 901
AgeI	ACCGGT	1 cut(s)	256
AgsI	TTSAA	9 cut(s)	158, 307, 464, 471, 685, 710, 722, 776, 853
AjiI	CACGTC	1 cut(s)	595
AjnI	CCWGG	3 cut(s)	418, 508, 826
AluBI	AGCT	9 cut(s)	34, 227, 341, 385, 787, 820, 856, 867, 916
AluI	AGCT	9 cut(s)	34, 227, 341, 385, 787, 820, 856, 867, 916
Alw21I	GWGCWC	3 cut(s)	705, 789, 802
AlwI	GGATC	2 cut(s)	605, 1144
AoxI	GGCC	2 cut(s)	5, 479
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	2 cut(s)	98, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
AsiGI	ACCGGT	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	947
AsuHPI	GGTGA	3 cut(s)	179, 277, 568
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	789
Bbv12I	GWGCWC	3 cut(s)	705, 789, 802
BbvCI	CCTCAGC	1 cut(s)	1110
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	3 cut(s)	420, 510, 828
BfaI	CTAG	2 cut(s)	224, 551
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	3 cut(s)	253, 892, 1132
BisI	GCNGC	2 cut(s)	24, 1050
BlsI	GCNGC	2 cut(s)	25, 1051
Bme1390I	CCNGG	3 cut(s)	420, 510, 828
BmgBI	CACGTC	1 cut(s)	595
BmiI	GGNNCC	2 cut(s)	54, 129
BmrFI	CCNGG	3 cut(s)	420, 510, 828
BmsI	GCATC	4 cut(s)	421, 445, 788, 1015
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	786
Bsa29I	ATCGAT	1 cut(s)	1132
BsaBI	GATNNNNATC	2 cut(s)	207, 684
BsaHI	GRCGYC	1 cut(s)	873
BsaJI	CCNNGG	4 cut(s)	48, 419, 509, 895
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 901
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	56, 539
Bse3DI	GCAATG	1 cut(s)	984
Bse8I	GATNNNNATC	2 cut(s)	207, 684
BseBI	CCWGG	3 cut(s)	420, 510, 828
BseCI	ATCGAT	1 cut(s)	1132
BseDI	CCNNGG	4 cut(s)	48, 419, 509, 895
BseGI	GGATG	5 cut(s)	44, 208, 460, 800, 847
BseJI	GATNNNNATC	2 cut(s)	207, 684
BseLI	CCNNNNNNNGG	2 cut(s)	335, 901
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	3 cut(s)	146, 774, 1101
BseNI	ACTGG	2 cut(s)	56, 539
BseXI	GCAGC	1 cut(s)	35
BsgI	GTGCAG	2 cut(s)	281, 587
Bsh1236I	CGCG	1 cut(s)	897
BshFI	GGCC	2 cut(s)	7, 481
BshNI	GGYRCC	1 cut(s)	127
BshTI	ACCGGT	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	1132
BsiHKAI	GWGCWC	3 cut(s)	705, 789, 802
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	335, 901
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	7, 481
Bsp1286I	GDGCHC	3 cut(s)	705, 789, 802
Bsp143I	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
BspACI	CCGC	4 cut(s)	895, 897, 975, 1050
BspANI	GGCC	2 cut(s)	7, 481
BspCNI	CTCAG	3 cut(s)	145, 775, 1102
BspDI	ATCGAT	1 cut(s)	1132
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	54, 129
BspMI	ACCTGC	3 cut(s)	253, 892, 1132
BspPI	GGATC	2 cut(s)	605, 1144
BspT107I	GGYRCC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	56, 539
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	48, 419, 509, 895
BssMI	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
BssNI	GRCGYC	1 cut(s)	873
Bst2UI	CCWGG	3 cut(s)	420, 510, 828
Bst4CI	ACNGT	3 cut(s)	124, 173, 521
BstACI	GRCGYC	1 cut(s)	873
BstC8I	GCNNGC	2 cut(s)	570, 899
BstDEI	CTNAG	4 cut(s)	132, 783, 812, 1110
BstDSI	CCRYGG	2 cut(s)	48, 895
BstF5I	GGATG	5 cut(s)	44, 208, 460, 800, 847
BstFNI	CGCG	1 cut(s)	897
BstKTI	GATC	5 cut(s)	303, 613, 1132, 1136, 1152
BstMBI	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
BstMWI	GCNNNNNNNGC	1 cut(s)	913
BstNI	CCWGG	3 cut(s)	420, 510, 828
BstSCI	CCNGG	3 cut(s)	418, 508, 826
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	1132
BsuRI	GGCC	2 cut(s)	7, 481
BsuTUI	ATCGAT	1 cut(s)	1132
BtgI	CCRYGG	2 cut(s)	48, 895
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	5 cut(s)	44, 208, 460, 800, 847
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	203, 526
BveI	ACCTGC	3 cut(s)	253, 892, 1132
Cac8I	GCNNGC	2 cut(s)	570, 899
Cfr10I	RCCGGY	1 cut(s)	256
Cfr42I	CCGCGG	1 cut(s)	898
ClaI	ATCGAT	1 cut(s)	1132
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	70, 120, 806, 1085
CspAI	ACCGGT	1 cut(s)	256
CviAII	CATG	3 cut(s)	477, 937, 1137
CviQI	GTAC	4 cut(s)	70, 120, 806, 1085
DdeI	CTNAG	4 cut(s)	132, 783, 812, 1110
DpnI	GATC	5 cut(s)	302, 612, 1131, 1135, 1151
DpnII	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
Ecl136II	GAGCTC	1 cut(s)	787
Eco24I	GRGCYC	1 cut(s)	789
Eco32I	GATATC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	418, 508, 826
EcoRV	GATATC	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	789
FaeI	CATG	3 cut(s)	480, 940, 1140
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	3 cut(s)	476, 936, 1136
FauI	CCCGC	1 cut(s)	890
Fnu4HI	GCNGC	2 cut(s)	24, 1050
FokI	GGATG	5 cut(s)	31, 215, 467, 807, 854
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	2 cut(s)	24, 1050
FspBI	CTAG	2 cut(s)	224, 551
GluI	GCNGC	2 cut(s)	24, 1050
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	7, 481
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	3 cut(s)	480, 940, 1140
HincII	GTYRAC	2 cut(s)	319, 582
HindII	GTYRAC	2 cut(s)	319, 582
HindIII	AAGCTT	2 cut(s)	383, 865
HinfI	GANTC	5 cut(s)	279, 467, 685, 728, 733
HpaI	GTTAAC	1 cut(s)	582
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	3 cut(s)	179, 277, 568
Hpy166II	GTNNAC	5 cut(s)	111, 138, 319, 582, 1085
Hpy188I	TCNGA	7 cut(s)	31, 213, 430, 489, 545, 610, 784
Hpy188III	TCNNGA	3 cut(s)	62, 232, 694
Hpy8I	GTNNAC	5 cut(s)	111, 138, 319, 582, 1085
HpyAV	CCTTC	3 cut(s)	152, 832, 1137
HpyCH4III	ACNGT	3 cut(s)	124, 173, 521
HpyCH4IV	ACGT	2 cut(s)	594, 873
HpyCH4V	TGCA	7 cut(s)	196, 262, 413, 434, 568, 620, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	913
HpyF3I	CTNAG	4 cut(s)	132, 783, 812, 1110
HpySE526I	ACGT	2 cut(s)	594, 873
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	3 cut(s)	480, 940, 1140
KspAI	GTTAAC	1 cut(s)	582
KspI	CCGCGG	1 cut(s)	898
Kzo9I	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
LmnI	GCTCC	4 cut(s)	52, 64, 338, 913
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	4 cut(s)	421, 445, 788, 1015
MaeI	CTAG	2 cut(s)	224, 551
MaeII	ACGT	2 cut(s)	594, 873
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	302, 612, 1131, 1135, 1151
MboI	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
MboII	GAAGA	4 cut(s)	295, 476, 734, 1069
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	3 cut(s)	705, 789, 802
MluCI	AATT	5 cut(s)	98, 435, 471, 710, 1074
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	3 cut(s)	168, 523, 993
MroXI	GAANNNNTTC	1 cut(s)	947
MseI	TTAA	8 cut(s)	381, 387, 533, 581, 672, 750, 861, 1002
MspA1I	CMGCKG	1 cut(s)	897
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	3 cut(s)	420, 510, 828
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	3 cut(s)	420, 510, 828
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	1 cut(s)	913
NdeII	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
NlaIII	CATG	3 cut(s)	480, 940, 1140
NlaIV	GGNNCC	2 cut(s)	54, 129
NmuCI	GTSAC	1 cut(s)	167
PaqCI	CACCTGC	3 cut(s)	253, 892, 1132
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	947
PfeI	GAWTC	4 cut(s)	279, 467, 685, 728
PinAI	ACCGGT	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	25, 1051
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	418, 508, 826
PspGI	CCWGG	3 cut(s)	418, 508, 826
PspN4I	GGNNCC	2 cut(s)	54, 129
PsrI	GAACNNNNNNTAC	2 cut(s)	1012, 1044
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	4 cut(s)	71, 121, 807, 1086
RsaNI	GTAC	4 cut(s)	70, 120, 806, 1085
SacI	GAGCTC	1 cut(s)	789
SacII	CCGCGG	1 cut(s)	898
SaqAI	TTAA	8 cut(s)	381, 387, 533, 581, 672, 750, 861, 1002
SatI	GCNGC	2 cut(s)	24, 1050
Sau3AI	GATC	5 cut(s)	300, 610, 1129, 1133, 1149
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	3 cut(s)	420, 510, 828
SduI	GDGCHC	3 cut(s)	705, 789, 802
SfaNI	GCATC	4 cut(s)	421, 445, 788, 1015
SfcI	CTRYAG	1 cut(s)	150
Sfr303I	CCGCGG	1 cut(s)	898
SgrBI	CCGCGG	1 cut(s)	898
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	5 cut(s)	98, 435, 471, 710, 1074
SsiI	CCGC	4 cut(s)	895, 897, 975, 1050
SspMI	CTAG	2 cut(s)	224, 551
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	3 cut(s)	418, 508, 826
TaaI	ACNGT	3 cut(s)	124, 173, 521
TaiI	ACGT	2 cut(s)	597, 876
TaqI	TCGA	2 cut(s)	731, 1132
TasI	AATT	5 cut(s)	98, 435, 471, 710, 1074
TatI	WGTACW	3 cut(s)	69, 805, 1084
TauI	GCSGC	1 cut(s)	1052
TfiI	GAWTC	4 cut(s)	279, 467, 685, 728
Tru1I	TTAA	8 cut(s)	381, 387, 533, 581, 672, 750, 861, 1002
Tru9I	TTAA	8 cut(s)	381, 387, 533, 581, 672, 750, 861, 1002
TscAI	CASTG	2 cut(s)	203, 526
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	668, 741, 1028
TspGWI	ACGGA	4 cut(s)	37, 318, 603, 1032
TspRI	CASTG	2 cut(s)	203, 526
XapI	RAATTY	2 cut(s)	98, 710
XmnI	GAANNNNTTC	1 cut(s)	947
XspI	CTAG	2 cut(s)	224, 551
ZraI	GACGTC	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.