Prupe.1G483300_v2.0.a1

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
40297339 .. 40301290
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G483300.1

Sequence Viewer

Length: 1467 bp
ATGTGGCCTTACGTTAATGAAGCAGCATCAGAGCTGATAAAGAGCAATGTGGAACCGATACTCGAACAGTATAGGCCAGTCATCTTGTCGTCACTCAAATTCTCCACCTTGACCCTTGGCACTGTGGCTCCACAGTTCACAGGAGTTACCATGGTTGAAAGTGAAAGTGTAGCTGGAGGAGTCACTCTGGAGTTGGAGCTTCAGTGGGATGGAAATCCCAATATTGTGCTTGATATCAAAACCAGAGTTGGTCTTGCACTACCTGTTCAGGTGAAAAATATTGGATTCACTGGGGTTTTCAGGTTAATCTTCAAACCGCTAGTCGACGAGTTCCCTTGTTTTGGTGCTGTTTCTTATTCCTTAAGAGAAAAGAAAAAGCTGGATTTTGTGTTTAAAATTTCTGGTGGTGACATATCATCAATCCCAGGCGTTTCTGATGCTATTGAGGAAACAATACGAGATGCTATCGAAGATTGTATAACTTGGCCAGTACGCAATGTTATACCGATAATACCTGGAGATTATAGTGACTTGGAGTTGAAGCCTGTTGGAACATTAGAAGTGAAGCTTGTGGAAGCCAAGGAGTTAACAAACAAGGACCTGGTGGGAAAATCAGACCCTTTTGCTGCGATATTCATACGTCCCCTTCCTGATAGAACCAAAACCAGCAAAGTCATTGATAACGATTTAAATCCAATCTGGAATGAGCACTTCGAGTTCATAGTCGAAGATTCAACGACTCAACACTTGACAATAAGAATTTTCGACCATGAAGGACTTCAGGCTGCAGAACTCATTGGCTGTGCTCAAGTGAAACTGAGCCAGCTTGAGCCTGGCAAAGTGAAGGATGTGTGGTTAAAGCTGGTGAAGGATTTGGAGGTCCAGAGGGATACTAAATACAGGGGCCAGGTGCACTTGGAGCTGTTGTACTGTCCTTTTGGTATAGATGGTAACATTGTAAACCCATTTGACCATGACTTCGCGTTGACCTCTTTGGAAAAGGCTCTTAAACATGAAAGTAATGAGACAGACAGTTCAGAGTTGAGAAAAACCGCTGCTCAGAAGAAGAAGGAGGTCTTTGTGAGAGGAGTATTATCTGTAACAGTTATATCTGCAGAAGACTTGCCAGTTGTGGATTTTATGGGGAAAGCTGACCCTTTTGTTGTCCTTATTATGAAGAAATCTGAAACCAAAGCCAAGACCAGGGTTGTAACTAACAACTTGAATCCAGTTTGGAATCAAACTTTTGACTTCATGGTGGAGGATGCATTACATGAAATGTTAATGGTGGAAGTTTGGGACCATGACACTTTTGGAAAAGATAGAATAGGGAGAGTGATCATGACACTGACCAGGGTGTTAATGGAAGGGGAATATCAAGACTGTTATGCCCTAGATATTGCTAAATCAGGAAGAATTTATTTGAATCTAAAGTGGGTTGCACAGCATAAAGTCCGCGATACGTGA

Protein Analysis

489

Amino Acids

54.95

Weight (kDa)

5.18

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AccII CGCG 2 cut(s) 983, 1458
AciI CCGC 3 cut(s) 317, 1053, 1456
AcoI YGGCCR 1 cut(s) 485
AcsI RAATTY 4 cut(s) 98, 396, 759, 1416
AcuI CTGAAG 2 cut(s) 185, 764
AfaI GTAC 2 cut(s) 492, 929
AfiI CCNNNNNNNGG 2 cut(s) 341, 1203
AflII CTTAAG 1 cut(s) 361
AgsI TTSAA 6 cut(s) 158, 313, 541, 735, 1225, 1426
AjnI CCWGG 7 cut(s) 424, 514, 600, 832, 906, 1202, 1352
AluBI AGCT 9 cut(s) 34, 173, 199, 379, 568, 826, 862, 922, 1151
AluI AGCT 9 cut(s) 34, 173, 199, 379, 568, 826, 862, 922, 1151
Alw21I GWGCWC 3 cut(s) 711, 808, 915
Alw26I GTCTC 1 cut(s) 1019
Alw44I GTGCAC 1 cut(s) 911
AoxI GGCC 4 cut(s) 5, 74, 485, 904
ApaLI GTGCAC 1 cut(s) 911
ApeKI GCWGC 4 cut(s) 23, 626, 785, 1055
ApoI RAATTY 4 cut(s) 98, 396, 759, 1416
ArsI GACNNNNNNTTYG 4 cut(s) 306, 338, 962, 994
Asp700I GAANNNNTTC 1 cut(s) 777
AspS9I GGNCC 4 cut(s) 598, 880, 904, 1300
AsuHPI GGTGA 3 cut(s) 283, 419, 877
AvaII GGWCC 3 cut(s) 598, 880, 1300
BaeGI GKGCMC 1 cut(s) 915
BalI TGGCCA 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 1125
Bbv12I GWGCWC 3 cut(s) 711, 808, 915
BbvI GCAGC 4 cut(s) 35, 613, 772, 1042
BccI CCATC 2 cut(s) 203, 941
BciT130I CCWGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
BciVI GTATCC 1 cut(s) 883
BclI TGATCA 1 cut(s) 1338
BcoDI GTCTC 1 cut(s) 1019
BfaI CTAG 2 cut(s) 320, 1394
BfmI CTRYAG 2 cut(s) 786, 1113
BfrI CTTAAG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 883
BisI GCNGC 4 cut(s) 24, 627, 786, 1056
BlsI GCNGC 4 cut(s) 25, 628, 787, 1057
Bme1390I CCNGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
Bme18I GGWCC 3 cut(s) 598, 880, 1300
BmgT120I GGNCC 4 cut(s) 598, 880, 904, 1300
BmiI GGNNCC 4 cut(s) 54, 129, 905, 1301
BmrFI CCNGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 4 cut(s) 35, 427, 451, 1255
BmuI ACTGGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 1125
BpmI CTGGAG 3 cut(s) 195, 209, 537
BpuEI CTTGAG 2 cut(s) 792, 848
BsaAI YACGTR 1 cut(s) 1464
BsaBI GATNNNNATC 2 cut(s) 213, 690
BsaJI CCNNGG 6 cut(s) 115, 150, 424, 579, 1203, 1353
BsaXI ACNNNNNCTCC 6 cut(s) 112, 142, 188, 218, 911, 941
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 1203
Bse1I ACTGG 5 cut(s) 77, 295, 488, 1127, 1229
Bse3DI GCAATG 2 cut(s) 52, 502
Bse8I GATNNNNATC 2 cut(s) 213, 690
BseBI CCWGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
BseDI CCNNGG 6 cut(s) 115, 150, 424, 579, 1203, 1353
BseGI GGATG 3 cut(s) 214, 853, 1270
BseJI GATNNNNATC 2 cut(s) 213, 690
BseLI CCNNNNNNNGG 2 cut(s) 341, 1203
BseMI GCAATG 2 cut(s) 52, 502
BseMII CTCAG 2 cut(s) 809, 1073
BseNI ACTGG 5 cut(s) 77, 295, 488, 1127, 1229
BseRI GAGGAG 2 cut(s) 192, 1101
BseSI GKGCMC 1 cut(s) 915
BseXI GCAGC 4 cut(s) 35, 613, 772, 1042
Bsh1236I CGCG 2 cut(s) 983, 1458
BshFI GGCC 4 cut(s) 7, 76, 487, 906
BsiHKAI GWGCWC 3 cut(s) 711, 808, 915
BslFI GGGAC 2 cut(s) 627, 1313
BslI CCNNNNNNNGG 2 cut(s) 341, 1203
BsmAI GTCTC 1 cut(s) 1019
BsmFI GGGAC 2 cut(s) 627, 1313
BsnI GGCC 4 cut(s) 7, 76, 487, 906
Bsp1286I GDGCHC 3 cut(s) 711, 808, 915
Bsp143I GATC 1 cut(s) 1338
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 3 cut(s) 317, 1053, 1456
BspANI GGCC 4 cut(s) 7, 76, 487, 906
BspCNI CTCAG 2 cut(s) 810, 1072
BspFNI CGCG 2 cut(s) 983, 1458
BspHI TCATGA 1 cut(s) 1341
BspLI GGNNCC 4 cut(s) 54, 129, 905, 1301
BspMAI CTGCAG 2 cut(s) 790, 1117
BspTI CTTAAG 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 52, 502
BsrI ACTGG 5 cut(s) 77, 295, 488, 1127, 1229
BssECI CCNNGG 6 cut(s) 115, 150, 424, 579, 1203, 1353
BssMI GATC 1 cut(s) 1338
BssT1I CCWWGG 3 cut(s) 115, 150, 579
Bst2UI CCWGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
Bst4CI ACNGT 7 cut(s) 69, 124, 135, 932, 1034, 1105, 1385
BstAFI CTTAAG 1 cut(s) 361
BstBAI YACGTR 1 cut(s) 1464
BstC8I GCNNGC 1 cut(s) 824
BstDEI CTNAG 2 cut(s) 818, 1059
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 214, 853, 1270
BstFNI CGCG 2 cut(s) 983, 1458
BstKTI GATC 1 cut(s) 1341
BstMAI GTCTC 1 cut(s) 1019
BstMBI GATC 1 cut(s) 1338
BstMWI GCNNNNNNNGC 1 cut(s) 919
BstNI CCWGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
BstSCI CCNGG 7 cut(s) 424, 514, 600, 832, 906, 1202, 1352
BstSFI CTRYAG 2 cut(s) 786, 1113
BstSLI GKGCMC 1 cut(s) 915
BstUI CGCG 2 cut(s) 983, 1458
BstV1I GCAGC 4 cut(s) 35, 613, 772, 1042
BstV2I GAAGAC 1 cut(s) 1125
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 4 cut(s) 7, 76, 487, 906
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 214, 853, 1270
BtsIMutI CAGTG 4 cut(s) 120, 209, 288, 1346
Cac8I GCNNGC 1 cut(s) 824
CciI TCATGA 1 cut(s) 1341
Cfr13I GGNCC 4 cut(s) 598, 880, 904, 1300
CsiI ACCWGGT 1 cut(s) 600
Csp6I GTAC 2 cut(s) 491, 928
CviAII CATG 8 cut(s) 151, 770, 974, 1013, 1255, 1274, 1304, 1342
CviQI GTAC 2 cut(s) 491, 928
DdeI CTNAG 2 cut(s) 818, 1059
DpnI GATC 1 cut(s) 1340
DpnII GATC 1 cut(s) 1338
DraI TTTAAA 2 cut(s) 394, 690
EaeI YGGCCR 1 cut(s) 485
Eco130I CCWWGG 3 cut(s) 115, 150, 579
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 3 cut(s) 598, 880, 1300
Eco57I CTGAAG 2 cut(s) 185, 764
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 7 cut(s) 424, 514, 600, 832, 906, 1202, 1352
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 3 cut(s) 115, 150, 579
EcoT22I ATGCAT 1 cut(s) 1270
ErhI CCWWGG 3 cut(s) 115, 150, 579
FaeI CATG 8 cut(s) 154, 773, 977, 1016, 1258, 1277, 1307, 1345
FalI AAGNNNNNCTT 4 cut(s) 552, 584, 1061, 1093
FaqI GGGAC 2 cut(s) 627, 1313
FatI CATG 8 cut(s) 150, 769, 973, 1012, 1254, 1273, 1303, 1341
FbaI TGATCA 1 cut(s) 1338
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 24, 627, 786, 1056
FokI GGATG 3 cut(s) 221, 860, 1277
Fsp4HI GCNGC 4 cut(s) 24, 627, 786, 1056
FspBI CTAG 2 cut(s) 320, 1394
GluI GCNGC 4 cut(s) 24, 627, 786, 1056
GsuI CTGGAG 3 cut(s) 195, 209, 537
HaeIII GGCC 4 cut(s) 7, 76, 487, 906
Hin1II CATG 8 cut(s) 154, 773, 977, 1016, 1258, 1277, 1307, 1345
HincII GTYRAC 3 cut(s) 325, 588, 987
HindII GTYRAC 3 cut(s) 325, 588, 987
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 7 cut(s) 180, 285, 731, 739, 1225, 1237, 1426
HpaI GTTAAC 1 cut(s) 588
HphI GGTGA 3 cut(s) 283, 419, 877
Hpy166II GTNNAC 6 cut(s) 138, 325, 588, 913, 961, 987
Hpy188I TCNGA 6 cut(s) 31, 436, 616, 1039, 1062, 1186
Hpy188III TCNNGA 7 cut(s) 188, 650, 700, 883, 1342, 1379, 1410
Hpy8I GTNNAC 6 cut(s) 138, 325, 588, 913, 961, 987
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 6 cut(s) 656, 767, 838, 862, 1063, 1361
HpyCH4III ACNGT 7 cut(s) 69, 124, 135, 932, 1034, 1105, 1385
HpyCH4IV ACGT 3 cut(s) 12, 640, 1463
HpyCH4V TGCA 6 cut(s) 257, 788, 913, 1115, 1268, 1442
HpyF10VI GCNNNNNNNGC 1 cut(s) 919
HpyF3I CTNAG 2 cut(s) 818, 1059
HpySE526I ACGT 3 cut(s) 12, 640, 1463
Hsp92II CATG 8 cut(s) 154, 773, 977, 1016, 1258, 1277, 1307, 1345
Ksp22I TGATCA 1 cut(s) 1338
KspAI GTTAAC 1 cut(s) 588
Kzo9I GATC 1 cut(s) 1338
LmnI GCTCC 3 cut(s) 133, 196, 919
Lsp1109I GCAGC 4 cut(s) 35, 613, 772, 1042
LweI GCATC 4 cut(s) 35, 427, 451, 1255
MabI ACCWGGT 1 cut(s) 600
MaeI CTAG 2 cut(s) 320, 1394
MaeII ACGT 3 cut(s) 12, 640, 1463
MaeIII GTNAC 8 cut(s) 90, 145, 181, 407, 527, 950, 1099, 1210
MalI GATC 1 cut(s) 1340
MboI GATC 1 cut(s) 1338
MboII GAAGA 8 cut(s) 301, 482, 740, 1075, 1078, 1130, 1189, 1425
MhlI GDGCHC 3 cut(s) 711, 808, 915
MlsI TGGCCA 1 cut(s) 487
MluCI AATT 4 cut(s) 98, 396, 759, 1416
MluNI TGGCCA 1 cut(s) 487
MlyI GAGTC 2 cut(s) 189, 733
MmeI TCCRAC 2 cut(s) 174, 529
MnlI CCTC 8 cut(s) 170, 439, 871, 879, 1000, 1066, 1079, 1255
Mox20I TGGCCA 1 cut(s) 487
Mph1103I ATGCAT 1 cut(s) 1270
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 487
Msp20I TGGCCA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 1055
MspCI CTTAAG 1 cut(s) 361
MspR9I CCNGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
MvaI CCWGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
MvnI CGCG 2 cut(s) 983, 1458
MwoI GCNNNNNNNGC 1 cut(s) 919
NcoI CCATGG 1 cut(s) 150
NdeII GATC 1 cut(s) 1338
NlaIII CATG 8 cut(s) 154, 773, 977, 1016, 1258, 1277, 1307, 1345
NlaIV GGNNCC 4 cut(s) 54, 129, 905, 1301
NmuCI GTSAC 4 cut(s) 90, 181, 407, 527
NsiI ATGCAT 1 cut(s) 1270
PagI TCATGA 1 cut(s) 1341
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 5 cut(s) 285, 731, 1225, 1237, 1426
PkrI GCNGC 4 cut(s) 25, 628, 787, 1057
PleI GAGTC 2 cut(s) 188, 733
PpsI GAGTC 2 cut(s) 188, 733
Ppu21I YACGTR 1 cut(s) 1464
PpuMI RGGWCCY 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 7 cut(s) 424, 514, 600, 832, 906, 1202, 1352
PspGI CCWGG 7 cut(s) 424, 514, 600, 832, 906, 1202, 1352
PspN4I GGNNCC 4 cut(s) 54, 129, 905, 1301
PspPI GGNCC 4 cut(s) 598, 880, 904, 1300
PspPPI RGGWCCY 1 cut(s) 598
PstI CTGCAG 2 cut(s) 790, 1117
RsaI GTAC 2 cut(s) 492, 929
RsaNI GTAC 2 cut(s) 491, 928
SalI GTCGAC 1 cut(s) 323
SatI GCNGC 4 cut(s) 24, 627, 786, 1056
Sau3AI GATC 1 cut(s) 1338
Sau96I GGNCC 4 cut(s) 598, 880, 904, 1300
SchI GAGTC 2 cut(s) 189, 733
ScrFI CCNGG 7 cut(s) 426, 516, 602, 834, 908, 1204, 1354
SduI GDGCHC 3 cut(s) 711, 808, 915
SexAI ACCWGGT 1 cut(s) 600
SfaNI GCATC 4 cut(s) 35, 427, 451, 1255
SfcI CTRYAG 2 cut(s) 786, 1113
SinI GGWCC 3 cut(s) 598, 880, 1300
SmiI ATTTAAAT 1 cut(s) 690
SmlI CTYRAG 3 cut(s) 361, 807, 827
SmoI CTYRAG 3 cut(s) 361, 807, 827
Sse9I AATT 4 cut(s) 98, 396, 759, 1416
SsiI CCGC 3 cut(s) 317, 1053, 1456
SspI AATATT 2 cut(s) 223, 280
SspMI CTAG 2 cut(s) 320, 1394
StyD4I CCNGG 7 cut(s) 424, 514, 600, 832, 906, 1202, 1352
StyI CCWWGG 3 cut(s) 115, 150, 579
SwaI ATTTAAAT 1 cut(s) 690
TaaI ACNGT 7 cut(s) 69, 124, 135, 932, 1034, 1105, 1385
TaiI ACGT 3 cut(s) 15, 643, 1466
TaqI TCGA 6 cut(s) 63, 324, 468, 714, 726, 765
TasI AATT 4 cut(s) 98, 396, 759, 1416
TatI WGTACW 1 cut(s) 927
TfiI GAWTC 5 cut(s) 285, 731, 1225, 1237, 1426
TscAI CASTG 4 cut(s) 127, 209, 295, 1353
TseFI GTSAC 4 cut(s) 90, 181, 407, 527
TseI GCWGC 4 cut(s) 23, 626, 785, 1055
Tsp45I GTSAC 4 cut(s) 90, 181, 407, 527
TspDTI ATGAA 8 cut(s) 33, 625, 709, 786, 1029, 1190, 1243, 1290
TspRI CASTG 4 cut(s) 127, 209, 295, 1353
Vha464I CTTAAG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 911
VpaK11BI GGWCC 3 cut(s) 598, 880, 1300
XapI RAATTY 4 cut(s) 98, 396, 759, 1416
XcmI CCANNNNNNNNNTGG 3 cut(s) 830, 1310, 1360
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 2 cut(s) 320, 1394
Zsp2I ATGCAT 1 cut(s) 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.