Rroxscaffold_7G00170360

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
10807093 .. 10812771
5679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170360.1

Sequence Viewer

Length: 1584 bp
ATGGGGTTCTTCTTTGGACTGCTCGTCGGCATTGCCATCGGAATTGGGTTGATCATGGCTTTTGCTCGGAGCGAGAGTAGGCGATCCAAACGTCGCTCTGAATTGGCCAAGACTATTGCAGCGCTTGCAAGGATGACAGTGCAAGATTCGAGAAAGCTTCTTGCACCTCAGTATTATCCATCTTGGGTTATTTTCACGCAGCAACAGAAGTTGAGCAGCATCGGAGCTGATAAGGAGCAGTGTGGAACCAATACTCAAACAATATACCCCCCGGCTGTCTTGGATTCACTCAAATTCTCCACATTAACCCTTGGCACTGTGGCTCCACAATTTACAGGAATTTCCCTTGTTGAAAGTGAATGTGGAGCTGGGGGAGTCACTATGGAGTTTGAGATACAATGGGATGGTGATCCAGATATTGTAATTGATATCAATACCCATGTTGGTCTTGCACTACCTGTAGAGGTGAAAGATATTGGATTCACTGGGGTTTTCAGGTTAATCTTCAAACCACTAATTGACCAGTTTCCTTGTTTTGGAGCTGTTGCATATTCCCTAAGAGAAAAGAAAAAGCTGGACTTTGTGTTTAAAGTCTCAGGTAGTGAAATATCAGCAATTCCAGGAGTTTCCGAGGCTCTTGAGGAAACAATACGAGATGCTATTGAAGATTGTATTACTTGGCCAGTTCGTAACATTATTCCCATTGTACCTGGCGATTACAGTGACTTGGAGTTGAAGCCCGTTGGAACATTAGAAGTGAAGCTTGTGGAAGCCAAGGAGTTAACGAATAAGGACATAGTAGGAAAATCAGATCCCTTTGCTGTGATATTCATACGTCCACTTCCTGACAGAACAAAAACCAGCAAAGTCATTGACAACGATTTAAACCCAATATGGAATGAGCACTATGAGTTCATAGTTGAAGATCAATCAACTCAACGCTTGACAGTAAGAATTTTTGATGATGAAGGACTTCAGGCTGCAGAATTCATTGGCTGTTGTCAAATTCCACTGAGTTCGCTTGAGCCGGGGGTGCACTTGGAGCTGTTATACTGCCCTTATGGTACAGATGGGAACATTGTAAACCCGTTCGACCATGACTTCTCCTTGACCTCTTTGGAAAAGGCTTTGAAGATTGAAAATTTAACAAAAGCAGAGTTGAGAAAAATATCTACCAAGAAGAAGAAGGAAATGTTTATAAGAGGAGTACTATCTGTAACAGTTATATCTGCAGAAGACCTACCAATAGTTGATTTTATGGGGAAGGCTGACCCGTATGTTGTCCTTGTTATGAAGAAATCTGAAGCAAAGAAAAAGACCAGGGTCATAACGAACAACTTGAATCCAATTTGGAATCAGACATTTGACTTCATGGTGGAGGATGCATTACATGAAATGTTAATTGTCGAAGTTTGGGACCATGACACTTTTGGGAAGGATAGAATAGGGAGAGTGATCATGACACTCACCAGGGTCTTAATGGAAGGAGAATATCAGGAGTGCTATCCCATAGACATTGCTAAATCTGGAAGCATTACTCTGAGTCTCAAATGGGTTGCGCAGCATAAAGTCCGTGATTCTTGA

Protein Analysis

527

Amino Acids

58.95

Weight (kDa)

5.25

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 249 - 346 7.1e-23 C2 domain
C2 PF00168 402 - 503 1.4e-27 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1199
Acc16I TGCGCA 1 cut(s) 1560
AclWI GGATC 3 cut(s) 78, 404, 806
AcoI YGGCCR 2 cut(s) 105, 680
AcsI RAATTY 6 cut(s) 293, 339, 954, 986, 1005, 1141
AcuI CTGAAG 2 cut(s) 959, 1323
AfaI GTAC 3 cut(s) 708, 1066, 1209
AfeI AGCGCT 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 536
AgsI TTSAA 8 cut(s) 353, 508, 665, 736, 923, 1132, 1139, 1342
AhdI GACNNNNNGTC 1 cut(s) 23
AjnI CCWGG 4 cut(s) 619, 709, 1319, 1469
AluBI AGCT 7 cut(s) 157, 227, 368, 542, 574, 763, 1045
AluI AGCT 7 cut(s) 157, 227, 368, 542, 574, 763, 1045
Alw21I GWGCWC 2 cut(s) 906, 1038
Alw26I GTCTC 2 cut(s) 598, 1550
Alw44I GTGCAC 1 cut(s) 1034
AlwI GGATC 3 cut(s) 78, 404, 806
Aor51HI AGCGCT 1 cut(s) 123
AoxI GGCC 2 cut(s) 105, 680
ApaLI GTGCAC 1 cut(s) 1034
ApeKI GCWGC 5 cut(s) 119, 199, 216, 980, 1561
ApoI RAATTY 6 cut(s) 293, 339, 954, 986, 1005, 1141
Asp700I GAANNNNTTC 1 cut(s) 972
AspLEI GCGC 2 cut(s) 124, 1561
AspS9I GGNCC 1 cut(s) 1417
AsuC2I CCSGG 2 cut(s) 272, 1029
AsuHPI GGTGA 3 cut(s) 419, 478, 1459
AvaII GGWCC 1 cut(s) 1417
BaeGI GKGCMC 1 cut(s) 1038
BalI TGGCCA 2 cut(s) 107, 682
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 2 cut(s) 906, 1038
BbvI GCAGC 5 cut(s) 131, 211, 228, 967, 1573
BccI CCATC 4 cut(s) 44, 187, 398, 1064
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 4 cut(s) 621, 711, 1321, 1471
BclI TGATCA 2 cut(s) 51, 1455
BcnI CCSGG 2 cut(s) 272, 1029
BcoDI GTCTC 2 cut(s) 598, 1550
BfmI CTRYAG 3 cut(s) 459, 981, 1230
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 5 cut(s) 120, 200, 217, 981, 1562
BlsI GCNGC 5 cut(s) 121, 201, 218, 982, 1563
BmcAI AGTACT 1 cut(s) 1209
Bme1390I CCNGG 6 cut(s) 272, 621, 711, 1029, 1321, 1471
Bme18I GGWCC 1 cut(s) 1417
BmeRI GACNNNNNGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 1417
BmiI GGNNCC 3 cut(s) 247, 324, 1418
BmrFI CCNGG 6 cut(s) 272, 621, 711, 1029, 1321, 1471
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 228, 646, 1372
BmuI ACTGGG 1 cut(s) 495
BoxI GACNNNNGTC 1 cut(s) 1322
BpiI GAAGAC 1 cut(s) 1242
BpuEI CTTGAG 2 cut(s) 659, 1043
BpuMI CCSGG 2 cut(s) 272, 1029
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 7 cut(s) 270, 310, 630, 774, 1028, 1320, 1470
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 307, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse1I ACTGG 3 cut(s) 490, 523, 683
Bse3DI GCAATG 2 cut(s) 30, 1515
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 4 cut(s) 621, 711, 1321, 1471
BseDI CCNNGG 7 cut(s) 270, 310, 630, 774, 1028, 1320, 1470
BseGI GGATG 3 cut(s) 138, 409, 1387
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 30, 1515
BseMII CTCAG 4 cut(s) 182, 609, 1004, 1532
BseNI ACTGG 3 cut(s) 490, 523, 683
BseRI GAGGAG 1 cut(s) 1218
BseSI GKGCMC 1 cut(s) 1038
BseXI GCAGC 5 cut(s) 131, 211, 228, 967, 1573
BseYI CCCAGC 1 cut(s) 368
BshFI GGCC 2 cut(s) 107, 682
BsiHKAI GWGCWC 2 cut(s) 906, 1038
BsiSI CCGG 2 cut(s) 272, 1028
BslFI GGGAC 1 cut(s) 1430
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 2 cut(s) 598, 1550
BsmFI GGGAC 1 cut(s) 1430
BsnI GGCC 2 cut(s) 107, 682
Bsp1286I GDGCHC 2 cut(s) 906, 1038
Bsp143I GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
BspANI GGCC 2 cut(s) 107, 682
BspCNI CTCAG 4 cut(s) 181, 608, 1005, 1533
BspHI TCATGA 1 cut(s) 1458
BspLI GGNNCC 3 cut(s) 247, 324, 1418
BspMAI CTGCAG 2 cut(s) 985, 1234
BspPI GGATC 3 cut(s) 78, 404, 806
BsrDI GCAATG 2 cut(s) 30, 1515
BsrI ACTGG 3 cut(s) 490, 523, 683
BssECI CCNNGG 7 cut(s) 270, 310, 630, 774, 1028, 1320, 1470
BssMI GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
BssT1I CCWWGG 2 cut(s) 310, 774
Bst2UI CCWGG 4 cut(s) 621, 711, 1321, 1471
Bst4CI ACNGT 5 cut(s) 139, 319, 722, 949, 1222
BstAPI GCANNNNNTGC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 5 cut(s) 168, 557, 595, 1013, 1541
BstF5I GGATG 3 cut(s) 138, 409, 1387
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 124, 1561
BstKTI GATC 6 cut(s) 54, 86, 412, 814, 928, 1458
BstMAI GTCTC 2 cut(s) 598, 1550
BstMBI GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
BstMWI GCNNNNNNNGC 3 cut(s) 125, 1033, 1042
BstNI CCWGG 4 cut(s) 621, 711, 1321, 1471
BstPAI GACNNNNGTC 1 cut(s) 1322
BstSCI CCNGG 6 cut(s) 270, 619, 709, 1027, 1319, 1469
BstSFI CTRYAG 3 cut(s) 459, 981, 1230
BstSLI GKGCMC 1 cut(s) 1038
BstV1I GCAGC 5 cut(s) 131, 211, 228, 967, 1573
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 2 cut(s) 107, 682
BtsCI GGATG 3 cut(s) 138, 409, 1387
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 6 cut(s) 144, 245, 315, 483, 727, 1010
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 1458
CfoI GCGC 2 cut(s) 124, 1561
Cfr13I GGNCC 1 cut(s) 1417
Csp6I GTAC 3 cut(s) 707, 1065, 1208
CviAII CATG 7 cut(s) 55, 440, 1097, 1372, 1391, 1421, 1459
CviQI GTAC 3 cut(s) 707, 1065, 1208
DdeI CTNAG 5 cut(s) 168, 557, 595, 1013, 1541
DpnI GATC 6 cut(s) 53, 85, 411, 813, 927, 1457
DpnII GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
DraI TTTAAA 2 cut(s) 589, 885
DriI GACNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 105, 680
Eam1105I GACNNNNNGTC 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 310, 774
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 1417
Eco47III AGCGCT 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 959, 1323
EcoRI GAATTC 1 cut(s) 986
EcoRII CCWGG 4 cut(s) 619, 709, 1319, 1469
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 310, 774
EcoT22I ATGCAT 1 cut(s) 1387
ErhI CCWWGG 2 cut(s) 310, 774
FaeI CATG 7 cut(s) 58, 443, 1100, 1375, 1394, 1424, 1462
FalI AAGNNNNNCTT 4 cut(s) 563, 595, 747, 779
FaqI GGGAC 1 cut(s) 1430
FatI CATG 7 cut(s) 54, 439, 1096, 1371, 1390, 1420, 1458
FbaI TGATCA 2 cut(s) 51, 1455
Fnu4HI GCNGC 5 cut(s) 120, 200, 217, 981, 1562
FokI GGATG 3 cut(s) 145, 416, 1394
Fsp4HI GCNGC 5 cut(s) 120, 200, 217, 981, 1562
FspI TGCGCA 1 cut(s) 1560
GlaI GCGC 2 cut(s) 123, 1560
GluI GCNGC 5 cut(s) 120, 200, 217, 981, 1562
GsaI CCCAGC 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 2 cut(s) 107, 682
HapII CCGG 2 cut(s) 272, 1028
HhaI GCGC 2 cut(s) 124, 1561
Hin1II CATG 7 cut(s) 58, 443, 1100, 1375, 1394, 1424, 1462
Hin6I GCGC 2 cut(s) 122, 1559
HinP1I GCGC 2 cut(s) 122, 1559
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 2 cut(s) 155, 761
HinfI GANTC 8 cut(s) 146, 284, 375, 480, 1342, 1354, 1543, 1577
HpaI GTTAAC 1 cut(s) 783
HpaII CCGG 2 cut(s) 272, 1028
HphI GGTGA 3 cut(s) 419, 478, 1459
Hpy166II GTNNAC 4 cut(s) 783, 839, 1036, 1084
Hpy188I TCNGA 9 cut(s) 41, 69, 100, 224, 631, 811, 1303, 1359, 1542
Hpy188III TCNNGA 8 cut(s) 150, 413, 638, 845, 1459, 1496, 1527, 1581
Hpy8I GTNNAC 4 cut(s) 783, 839, 1036, 1084
Hpy99I CGWCG 2 cut(s) 29, 96
HpyAV CCTTC 5 cut(s) 962, 1180, 1258, 1429, 1478
HpyCH4III ACNGT 5 cut(s) 139, 319, 722, 949, 1222
HpyCH4IV ACGT 2 cut(s) 91, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 1033, 1042
HpyF3I CTNAG 5 cut(s) 168, 557, 595, 1013, 1541
HpySE526I ACGT 2 cut(s) 91, 835
Hsp92II CATG 7 cut(s) 58, 443, 1100, 1375, 1394, 1424, 1462
HspAI GCGC 2 cut(s) 122, 1559
Ksp22I TGATCA 2 cut(s) 51, 1455
KspAI GTTAAC 1 cut(s) 783
Kzo9I GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
LmnI GCTCC 7 cut(s) 69, 224, 235, 328, 365, 539, 1042
Lsp1109I GCAGC 5 cut(s) 131, 211, 228, 967, 1573
LweI GCATC 3 cut(s) 228, 646, 1372
MaeII ACGT 2 cut(s) 91, 835
MaeIII GTNAC 4 cut(s) 376, 689, 722, 1216
MalI GATC 6 cut(s) 53, 85, 411, 813, 927, 1457
MboI GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
MboII GAAGA 8 cut(s) 496, 677, 935, 1144, 1192, 1195, 1247, 1306
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 906, 1038
MlsI TGGCCA 2 cut(s) 107, 682
MluNI TGGCCA 2 cut(s) 107, 682
MlyI GAGTC 2 cut(s) 384, 1552
MmeI TCCRAC 1 cut(s) 724
MnlI CCTC 7 cut(s) 177, 457, 625, 634, 1123, 1196, 1372
Mox20I TGGCCA 2 cut(s) 107, 682
Mph1103I ATGCAT 1 cut(s) 1387
MroXI GAANNNNTTC 1 cut(s) 972
MscI TGGCCA 2 cut(s) 107, 682
MseI TTAA 8 cut(s) 305, 500, 588, 782, 884, 1145, 1400, 1478
Msp20I TGGCCA 2 cut(s) 107, 682
MspI CCGG 2 cut(s) 272, 1028
MspR9I CCNGG 6 cut(s) 272, 621, 711, 1029, 1321, 1471
MvaI CCWGG 4 cut(s) 621, 711, 1321, 1471
MwoI GCNNNNNNNGC 3 cut(s) 125, 1033, 1042
NciI CCSGG 2 cut(s) 272, 1029
NdeII GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
NlaIII CATG 7 cut(s) 58, 443, 1100, 1375, 1394, 1424, 1462
NlaIV GGNNCC 3 cut(s) 247, 324, 1418
NmuCI GTSAC 2 cut(s) 376, 722
NsbI TGCGCA 1 cut(s) 1560
NsiI ATGCAT 1 cut(s) 1387
PagI TCATGA 1 cut(s) 1458
PdmI GAANNNNTTC 1 cut(s) 972
PfeI GAWTC 6 cut(s) 146, 284, 480, 1342, 1354, 1577
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 5 cut(s) 121, 201, 218, 982, 1563
PleI GAGTC 2 cut(s) 383, 1551
PpsI GAGTC 2 cut(s) 383, 1551
PshAI GACNNNNGTC 1 cut(s) 1322
PsiI TTATAA 1 cut(s) 1199
Psp6I CCWGG 4 cut(s) 619, 709, 1319, 1469
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 4 cut(s) 619, 709, 1319, 1469
PspN4I GGNNCC 3 cut(s) 247, 324, 1418
PspPI GGNCC 1 cut(s) 1417
PstI CTGCAG 2 cut(s) 985, 1234
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 3 cut(s) 708, 1066, 1209
RsaNI GTAC 3 cut(s) 707, 1065, 1208
SaqAI TTAA 8 cut(s) 305, 500, 588, 782, 884, 1145, 1400, 1478
SatI GCNGC 5 cut(s) 120, 200, 217, 981, 1562
Sau3AI GATC 6 cut(s) 51, 83, 409, 811, 925, 1455
Sau96I GGNCC 1 cut(s) 1417
ScaI AGTACT 1 cut(s) 1209
SchI GAGTC 2 cut(s) 384, 1552
ScrFI CCNGG 6 cut(s) 272, 621, 711, 1029, 1321, 1471
SduI GDGCHC 2 cut(s) 906, 1038
SfaNI GCATC 3 cut(s) 228, 646, 1372
SfcI CTRYAG 3 cut(s) 459, 981, 1230
SinI GGWCC 1 cut(s) 1417
SmlI CTYRAG 2 cut(s) 638, 1022
SmoI CTYRAG 2 cut(s) 638, 1022
StyD4I CCNGG 6 cut(s) 270, 619, 709, 1027, 1319, 1469
StyI CCWWGG 2 cut(s) 310, 774
TaaI ACNGT 5 cut(s) 139, 319, 722, 949, 1222
TaiI ACGT 2 cut(s) 94, 838
TaqI TCGA 3 cut(s) 149, 1092, 1407
TatI WGTACW 1 cut(s) 1207
TfiI GAWTC 6 cut(s) 146, 284, 480, 1342, 1354, 1577
Tru1I TTAA 8 cut(s) 305, 500, 588, 782, 884, 1145, 1400, 1478
Tru9I TTAA 8 cut(s) 305, 500, 588, 782, 884, 1145, 1400, 1478
TscAI CASTG 6 cut(s) 144, 245, 322, 490, 727, 1017
TseFI GTSAC 2 cut(s) 376, 722
TseI GCWGC 5 cut(s) 119, 199, 216, 980, 1561
Tsp45I GTSAC 2 cut(s) 376, 722
TspDTI ATGAA 7 cut(s) 820, 904, 979, 981, 1307, 1360, 1407
TspGWI ACGGA 1 cut(s) 1562
TspRI CASTG 6 cut(s) 144, 245, 322, 490, 727, 1017
VneI GTGCAC 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 1417
XapI RAATTY 6 cut(s) 293, 339, 954, 986, 1005, 1141
XcmI CCANNNNNNNNNTGG 2 cut(s) 1427, 1477
XmnI GAANNNNTTC 1 cut(s) 972
ZrmI AGTACT 1 cut(s) 1209
Zsp2I ATGCAT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.