FvH4_2g29010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010191
Physical Location & Seq
Forward (+)
22606945 .. 22609406
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29010.t1

Sequence Viewer

Length: 1164 bp
ATGCCAAGATCAGGCCCAAGACCCTATGACTGTATCAGAAGAGCTTGGCACAGTGAGAGGCACCAGCCTATGAGAGGTTCTCTCATTAAAGAGATTTTCAGTGTGGTGAATGAGATCCATAGCTCAGCTACTAGGAAGAACAAGGAGTGGCAAGAGAAGCTCCCTATTGTTGTGTTGAAAGCAGAAGAGATTATGTACTCTAAAGCCAATTCTGAGGCTGAGTACACTGACCTCAAAACGCTTTGGGACCGAGCAAATGATGCCATTAACACTATAATTCGCCGCGATGAGAGCATTGAAACCGGTGAAGAGTTTCTTCAGCCTTGTATTGAAGCTGCTCTGAATCTTGGGTGTGTGGCAAGAAGAGCTTCCAGGAGCCAACGATATTCTAATCCAAGGTGTTATCTTAGCCCCATCACTTCTGATGTCCCTAGCGTAGCAGAGAAAGGTAGCCAAAAGGATCATACCCCTCATCGTTCAAAGTTTGTGAAACCCATTACTATCAACTCAAGCCATCTTGGCTCTGAATCCACTAAGAAACCCATCTCTGTATCTGAAAATGTTCCTCCTTGTGGTTATGACCAATGCTCTCCTAGGGATACACAGGCAACATCTAATATCCCTTCATACCCTCTATACTATGGGAATTGCCCCCAATTTGAAGAACTCAAACATGGTTTTGTTAGCCTTCCCAAACCAGTTTCGAAGCCTTTAGAGCCTGCCAGGACCAGTGGTGTCCCAAACTTGTTCCGCAGTAGAGATAAACCAAACTACAATACTCAAAAAGGTGCTAGGGACTGCCCTGATCAGACCCCAGATTTGGTTGGGTGTGATCTCTCTCTTCGGCTAGGCTCACTCTCTAGTCAATGCCCAAGCAGTGAAAACAATCCTCCACAGAAAGTCAGAGATGTCGGTGCTCAAGAGAGCAAATGTACTGATCAGCCTCCACAATTGGATAAAGAGCTCTCTTTCTTTCCCAAAGGTAATGAACATTTCCCTGTAGGCTCGTATATGGGTGATTGGAGCGAGTTTATGAATGCGCATTCAACGAGGAGAAAGCGAAAGGCAGATTTTAATCACCCAACAGAGGATGCTAAATTTTGTAGGCAGCCGGAGCTTCCATTCGGCCACTTTGCTGGAAGTATGGGAAATGGAGATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

43.51

Weight (kDa)

8.37

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1041
AccB1I GGYRCC 1 cut(s) 60
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 283, 751
AclWI GGATC 2 cut(s) 109, 468
AcoI YGGCCR 1 cut(s) 1126
AcsI RAATTY 1 cut(s) 1097
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 3 cut(s) 197, 224, 934
AfiI CCNNNNNNNGG 5 cut(s) 11, 74, 572, 820, 1087
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 6 cut(s) 178, 299, 332, 480, 662, 1047
AjnI CCWGG 2 cut(s) 371, 722
AluBI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 964, 1117
AluI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 964, 1117
Alw21I GWGCWC 2 cut(s) 919, 966
AlwI GGATC 2 cut(s) 109, 468
AoxI GGCC 2 cut(s) 13, 1126
ApeKI GCWGC 2 cut(s) 335, 1108
ApoI RAATTY 1 cut(s) 1097
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
AsiGI ACCGGT 1 cut(s) 302
Asp700I GAANNNNTTC 3 cut(s) 312, 367, 561
AspA2I CCTAGG 1 cut(s) 593
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 3 cut(s) 14, 247, 726
AsuHPI GGTGA 4 cut(s) 118, 317, 1028, 1070
AsuII TTCGAA 1 cut(s) 704
AvaII GGWCC 2 cut(s) 247, 726
AvrII CCTAGG 1 cut(s) 593
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 966
Bbv12I GWGCWC 2 cut(s) 919, 966
BbvI GCAGC 2 cut(s) 322, 1120
BccI CCATC 3 cut(s) 422, 522, 551
BciT130I CCWGG 2 cut(s) 373, 724
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 2 cut(s) 805, 937
BfaI CTAG 6 cut(s) 132, 432, 594, 792, 848, 861
BfmI CTRYAG 2 cut(s) 999, 1160
BfuI GTATCC 1 cut(s) 592
BglI GCCNNNNNGGC 1 cut(s) 519
BglII AGATCT 1 cut(s) 1156
BisI GCNGC 3 cut(s) 283, 336, 1109
BlnI CCTAGG 1 cut(s) 593
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 3 cut(s) 284, 337, 1110
Bme1390I CCNGG 2 cut(s) 373, 724
Bme18I GGWCC 2 cut(s) 247, 726
BmgT120I GGNCC 3 cut(s) 14, 247, 726
BmiI GGNNCC 3 cut(s) 62, 248, 377
BmrFI CCNGG 2 cut(s) 373, 724
BmsI GCATC 2 cut(s) 250, 1081
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 66, 98
Bpu1102I GCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 493, 903
BsaBI GATNNNNATC 1 cut(s) 1074
BsaJI CCNNGG 2 cut(s) 395, 593
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 74, 572, 820, 1087
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 698, 729
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 2 cut(s) 373, 724
BseDI CCNNGG 2 cut(s) 395, 593
BseGI GGATG 1 cut(s) 1096
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 5 cut(s) 11, 74, 572, 820, 1087
BseMII CTCAG 3 cut(s) 138, 204, 210
BseNI ACTGG 2 cut(s) 698, 729
BseRI GAGGAG 1 cut(s) 1066
BseXI GCAGC 2 cut(s) 322, 1120
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 15, 1128
BshNI GGYRCC 1 cut(s) 60
BshTI ACCGGT 1 cut(s) 302
BsiHKAI GWGCWC 2 cut(s) 919, 966
BsiSI CCGG 2 cut(s) 303, 1112
BslFI GGGAC 4 cut(s) 260, 413, 722, 809
BslI CCNNNNNNNGG 5 cut(s) 11, 74, 572, 820, 1087
BsmFI GGGAC 4 cut(s) 260, 413, 722, 809
BsmI GAATGC 2 cut(s) 1042, 1042
BsnI GGCC 2 cut(s) 15, 1128
Bsp119I TTCGAA 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 919, 966
Bsp143I GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 283, 751
BspANI GGCC 2 cut(s) 15, 1128
BspCNI CTCAG 3 cut(s) 137, 205, 211
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 62, 248, 377
BspPI GGATC 2 cut(s) 109, 468
BspQI GCTCTTC 2 cut(s) 34, 358
BspT104I TTCGAA 1 cut(s) 704
BspT107I GGYRCC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 698, 729
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 395, 593
BssMI GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
BssT1I CCWWGG 2 cut(s) 395, 593
Bst2UI CCWGG 2 cut(s) 373, 724
Bst4CI ACNGT 2 cut(s) 32, 53
Bst6I CTCTTC 5 cut(s) 34, 180, 303, 358, 846
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 5 cut(s) 124, 213, 219, 407, 534
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 1096
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 7 cut(s) 11, 117, 463, 808, 835, 940, 1159
BstMBI GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
BstMWI GCNNNNNNNGC 7 cut(s) 157, 260, 291, 365, 519, 715, 1114
BstNI CCWGG 2 cut(s) 373, 724
BstSCI CCNGG 2 cut(s) 371, 722
BstSFI CTRYAG 2 cut(s) 999, 1160
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 322, 1120
BstX2I RGATCY 2 cut(s) 114, 1156
BstXI CCANNNNNNTGG 1 cut(s) 1136
BstYI RGATCY 2 cut(s) 114, 1156
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 15, 1128
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 1096
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 5 cut(s) 58, 106, 225, 736, 883
Cac8I GCNNGC 1 cut(s) 720
CfoI GCGC 1 cut(s) 1042
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 14, 247, 726
Csp6I GTAC 3 cut(s) 196, 223, 933
CspAI ACCGGT 1 cut(s) 302
CviAII CATG 1 cut(s) 674
CviQI GTAC 3 cut(s) 196, 223, 933
DdeI CTNAG 5 cut(s) 124, 213, 219, 407, 534
DpnI GATC 7 cut(s) 10, 116, 462, 807, 834, 939, 1158
DpnII GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
EaeI YGGCCR 1 cut(s) 1126
Eam1104I CTCTTC 5 cut(s) 34, 180, 303, 358, 846
EarI CTCTTC 5 cut(s) 34, 180, 303, 358, 846
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 2 cut(s) 395, 593
Eco24I GRGCYC 1 cut(s) 966
Eco47I GGWCC 2 cut(s) 247, 726
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 964
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 371, 722
EcoT14I CCWWGG 2 cut(s) 395, 593
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 2 cut(s) 395, 593
FaeI CATG 1 cut(s) 677
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 352, 384
FaqI GGGAC 4 cut(s) 260, 413, 722, 809
FatI CATG 1 cut(s) 673
FbaI TGATCA 2 cut(s) 805, 937
Fnu4HI GCNGC 3 cut(s) 283, 336, 1109
FokI GGATG 1 cut(s) 1103
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 283, 336, 1109
FspAI RTGCGCAY 1 cut(s) 1041
FspBI CTAG 6 cut(s) 132, 432, 594, 792, 848, 861
FspI TGCGCA 1 cut(s) 1041
GlaI GCGC 1 cut(s) 1041
GluI GCNGC 3 cut(s) 283, 336, 1109
HaeIII GGCC 2 cut(s) 15, 1128
HapII CCGG 2 cut(s) 303, 1112
HhaI GCGC 1 cut(s) 1042
Hin1II CATG 1 cut(s) 677
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HinfI GANTC 2 cut(s) 343, 527
HpaII CCGG 2 cut(s) 303, 1112
HphI GGTGA 4 cut(s) 118, 317, 1028, 1070
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 8 cut(s) 38, 214, 342, 424, 526, 556, 810, 905
Hpy188III TCNNGA 1 cut(s) 920
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 633, 698
HpyCH4III ACNGT 2 cut(s) 32, 53
HpyF10VI GCNNNNNNNGC 7 cut(s) 157, 260, 291, 365, 519, 715, 1114
HpyF3I CTNAG 5 cut(s) 124, 213, 219, 407, 534
Hsp92II CATG 1 cut(s) 677
HspAI GCGC 1 cut(s) 1040
Ksp22I TGATCA 2 cut(s) 805, 937
Kzo9I GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
LguI GCTCTTC 2 cut(s) 34, 358
LmnI GCTCC 4 cut(s) 165, 375, 1023, 1114
Lsp1109I GCAGC 2 cut(s) 322, 1120
LweI GCATC 2 cut(s) 250, 1081
MaeI CTAG 6 cut(s) 132, 432, 594, 792, 848, 861
MalI GATC 7 cut(s) 10, 116, 462, 807, 834, 939, 1158
MboI GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
MboII GAAGA 8 cut(s) 51, 148, 197, 308, 320, 375, 674, 833
MfeI CAATTG 1 cut(s) 950
MflI RGATCY 2 cut(s) 114, 1156
MhlI GDGCHC 2 cut(s) 919, 966
MluCI AATT 6 cut(s) 208, 276, 646, 656, 950, 1097
MroXI GAANNNNTTC 3 cut(s) 312, 367, 561
MseI TTAA 3 cut(s) 87, 267, 1074
MspI CCGG 2 cut(s) 303, 1112
MspR9I CCNGG 2 cut(s) 373, 724
MunI CAATTG 1 cut(s) 950
Mva1269I GAATGC 2 cut(s) 1042, 1042
MvaI CCWGG 2 cut(s) 373, 724
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 7 cut(s) 157, 260, 291, 365, 519, 715, 1114
NdeII GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
NlaIII CATG 1 cut(s) 677
NlaIV GGNNCC 3 cut(s) 62, 248, 377
NsbI TGCGCA 1 cut(s) 1041
NspV TTCGAA 1 cut(s) 704
PciSI GCTCTTC 2 cut(s) 34, 358
PctI GAATGC 2 cut(s) 1042, 1042
PdmI GAANNNNTTC 3 cut(s) 312, 367, 561
PfeI GAWTC 2 cut(s) 343, 527
PfoI TCCNGGA 1 cut(s) 371
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 3 cut(s) 284, 337, 1110
Psp124BI GAGCTC 1 cut(s) 966
Psp6I CCWGG 2 cut(s) 371, 722
PspGI CCWGG 2 cut(s) 371, 722
PspN4I GGNNCC 3 cut(s) 62, 248, 377
PspPI GGNCC 3 cut(s) 14, 247, 726
PsuI RGATCY 2 cut(s) 114, 1156
RsaI GTAC 3 cut(s) 197, 224, 934
RsaNI GTAC 3 cut(s) 196, 223, 933
SacI GAGCTC 1 cut(s) 966
SapI GCTCTTC 2 cut(s) 34, 358
SaqAI TTAA 3 cut(s) 87, 267, 1074
SatI GCNGC 3 cut(s) 283, 336, 1109
Sau3AI GATC 7 cut(s) 8, 114, 460, 805, 832, 937, 1156
Sau96I GGNCC 3 cut(s) 14, 247, 726
ScrFI CCNGG 2 cut(s) 373, 724
SduI GDGCHC 2 cut(s) 919, 966
SfaNI GCATC 2 cut(s) 250, 1081
SfcI CTRYAG 2 cut(s) 999, 1160
SfuI TTCGAA 1 cut(s) 704
SinI GGWCC 2 cut(s) 247, 726
SmlI CTYRAG 2 cut(s) 508, 918
SmoI CTYRAG 2 cut(s) 508, 918
Sse9I AATT 6 cut(s) 208, 276, 646, 656, 950, 1097
SsiI CCGC 2 cut(s) 283, 751
SspMI CTAG 6 cut(s) 132, 432, 594, 792, 848, 861
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 371, 722
StyI CCWWGG 2 cut(s) 395, 593
TaaI ACNGT 2 cut(s) 32, 53
TaqI TCGA 1 cut(s) 704
TaqII GACCGA 1 cut(s) 264
TasI AATT 6 cut(s) 208, 276, 646, 656, 950, 1097
TatI WGTACW 3 cut(s) 195, 222, 932
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 2 cut(s) 343, 527
Tru1I TTAA 3 cut(s) 87, 267, 1074
Tru9I TTAA 3 cut(s) 87, 267, 1074
TscAI CASTG 5 cut(s) 58, 106, 232, 736, 883
TseI GCWGC 2 cut(s) 335, 1108
TspDTI ATGAA 3 cut(s) 615, 1002, 1049
TspRI CASTG 5 cut(s) 58, 106, 232, 736, 883
VpaK11BI GGWCC 2 cut(s) 247, 726
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 1097
XmaJI CCTAGG 1 cut(s) 593
XmnI GAANNNNTTC 3 cut(s) 312, 367, 561
XspI CTAG 6 cut(s) 132, 432, 594, 792, 848, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.