Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010191

Physical Location & Seq

Genomic Coordinates Reverse (-)

31644534 .. 31646933

Gene Structure 2400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1144400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGCCAAGATCAGGGCTAAGACCATATGAATGTGTGAGAAGAGCTTGGCACAGTGAGAGGCACCAACCCATGAGAGGTTCTCTTATCAAAGAAATCTTCAGGGTTGTGAACGAGATCCATAGCTTAGCTACTAAGAAGAACAAAGAATGGCAAGAGAAGCTCCCAATTGTTGTTCTCAAAGCTGAAGAAATTATGTATTCCAAAGCCAATTCTGAGGCAGAATACATGGACCTTAAAACCCTTTGGGACAGAACAAATGATGCCATTAACACGATAATTCGGCGTGATGAGACTACTGAAACTGGAGAGTTTCTTCAGCCTTGTATTGAAGCTGCTCTCAATTTGGGGTGCATACCGAGAAGAGCTACGAGGAGTCAACGGAATACTAACCCAAGGTGTTATCTGATGCCCATGACTTCGCATGTCCCTAGCATTTCTCCTAGTGTGGTAGAGGATGCTAATATAAAAGATTACACGTCCAATTCGCAGTATAGGCCACATTGTTCAAATTTTGTGAACCCCAAAACTACTAATTCAACCCCTCTTGTTTTTGAACCTAGATGCCCTGTTGCCCAATATAATGACTGCAATACTATGAAGTTCACGGTTGCCTCCGAAAATGTTCCTCCTTCGGGTTATGACCAATGCTTCTCTAGGGAAAATCTGGCAACATCTAATTTTCCTAAATACCCTCTGTACTATGGAAATCTTCCTCAGTTCAAAGAACTGAAACCAGGTTTTGTTGTCCTTCCCAAACCAGTTTCCGACCCTTTAGAACCTGCCAAGATAGGAGTTATCCCAAACCTGCTCTGTAATGGAGATAAATCAAATAATAACACACAAACAGAAAGAAGGGACTACCATGAGAACCCATGTTTGATTGGCTGTGATTTGTCTCTGCGGTTAGGCCCGCTCTCTAGTCAACTCCCAAGTGGTGTGAACAGTCGGCCCCAGGAGGGCAAAGATGTTGGCGTTGAGCAGCGGTCGAAGTGTAGTGATCAGTCACTGCAATTTGATAAACAGTTTTCTCTCATTCCTAAGGGTAGTGAGTATGGACCAACAGACGCATGGGGTAGGTTGAGTTTTGAGGGCGAAGATATATACGTCCAAGCAGCAATGAGAAAGCGGAAGGCAGCTTTCAATCACCCAACAGAGGATTCAAAATTTTGTAGGCAGCCGGAGCTTCCTTTCAGCCACTTTAATGGAAGCATGAGGAATGGAGGTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

46.38

Weight (kDa)

8.47

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca	FvH4_2g29010 FvH4_2g29010
malus_domestica	MD00G1144400.v1.1
prunus_persica	Prupe.1G481300_v2.0.a1
pyrus_communis	pycom15g11330
rosa_chinensis	RchiOBHm_Chr6g0297891
rosa_laevigata	RLG00000011553
rosa_multiflora	Rmu_sc0011097.1_g000012
rosa_roxburghii	Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa	Rorug06G0276600 Rorug06G0276700
rosa_samantha	Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana	Rw6G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	787, 813
AccB1I	GGYRCC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	913
AciI	CCGC	4 cut(s)	901, 911, 982, 1126
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	508, 1163
AcuI	CTGAAG	3 cut(s)	82, 204, 299
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	5 cut(s)	11, 74, 632, 956, 1153
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	7 cut(s)	329, 507, 537, 554, 721, 1141, 1161
AjiI	CACGTC	1 cut(s)	477
AjnI	CCWGG	2 cut(s)	733, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	1141, 1173
AloI	GAACNNNNNNTCC	1 cut(s)	1207
AluBI	AGCT	9 cut(s)	44, 123, 128, 160, 182, 332, 365, 1136, 1183
AluI	AGCT	9 cut(s)	44, 123, 128, 160, 182, 332, 365, 1136, 1183
Alw26I	GTCTC	2 cut(s)	284, 900
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	1006
AoxI	GGCC	3 cut(s)	494, 907, 947
ApeKI	GCWGC	5 cut(s)	332, 979, 1112, 1133, 1174
ApoI	RAATTY	2 cut(s)	508, 1163
Asp700I	GAANNNNTTC	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	229, 908, 948, 1055
AsuHPI	GGTGA	1 cut(s)	1136
AvaII	GGWCC	2 cut(s)	229, 1055
AxyI	CCTNAGG	1 cut(s)	1038
BanI	GGYRCC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	319, 991, 1124, 1145, 1186
BciT130I	CCWGG	2 cut(s)	735, 953
BclI	TGATCA	1 cut(s)	997
BcoDI	GTCTC	2 cut(s)	284, 900
BfaI	CTAG	5 cut(s)	429, 441, 558, 654, 918
BfuAI	ACCTGC	2 cut(s)	787, 813
BisI	GCNGC	5 cut(s)	333, 980, 1113, 1134, 1175
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	5 cut(s)	334, 981, 1114, 1135, 1176
Bme1390I	CCNGG	2 cut(s)	735, 953
Bme18I	GGWCC	2 cut(s)	229, 1055
BmgBI	CACGTC	1 cut(s)	477
BmgT120I	GGNCC	4 cut(s)	229, 908, 948, 1055
BmiI	GGNNCC	2 cut(s)	62, 950
BmrFI	CCNGG	2 cut(s)	735, 953
BmsI	GCATC	4 cut(s)	250, 396, 445, 551
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	392, 951
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 74, 632, 956, 1153
Bse1I	ACTGG	2 cut(s)	307, 758
Bse21I	CCTNAGG	1 cut(s)	1038
Bse3DI	GCAATG	1 cut(s)	1122
BseBI	CCWGG	2 cut(s)	735, 953
BseDI	CCNNGG	2 cut(s)	392, 951
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	5 cut(s)	11, 74, 632, 956, 1153
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	2 cut(s)	204, 728
BseNI	ACTGG	2 cut(s)	307, 758
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	5 cut(s)	319, 991, 1124, 1145, 1186
Bsh1285I	CGRYCG	1 cut(s)	986
BshFI	GGCC	3 cut(s)	496, 909, 949
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	986
BsiSI	CCGG	1 cut(s)	1178
BslFI	GGGAC	3 cut(s)	260, 410, 869
BslI	CCNNNNNNNGG	5 cut(s)	11, 74, 632, 956, 1153
BsmAI	GTCTC	2 cut(s)	284, 900
BsmFI	GGGAC	3 cut(s)	260, 410, 869
BsnI	GGCC	3 cut(s)	496, 909, 949
Bsp143I	GATC	3 cut(s)	8, 114, 997
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	4 cut(s)	901, 911, 982, 1126
BspANI	GGCC	3 cut(s)	496, 909, 949
BspCNI	CTCAG	2 cut(s)	205, 727
BspLI	GGNNCC	2 cut(s)	62, 950
BspMI	ACCTGC	2 cut(s)	787, 813
BspPI	GGATC	1 cut(s)	109
BspQI	GCTCTTC	2 cut(s)	34, 355
BspT107I	GGYRCC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	1122
BsrI	ACTGG	2 cut(s)	307, 758
BssECI	CCNNGG	2 cut(s)	392, 951
BssMI	GATC	3 cut(s)	8, 114, 997
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	735, 953
Bst4CI	ACNGT	4 cut(s)	53, 607, 944, 1023
Bst6I	CTCTTC	2 cut(s)	34, 355
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	6 cut(s)	17, 124, 132, 213, 714, 1038
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	3 cut(s)	11, 117, 1000
BstMAI	GTCTC	2 cut(s)	284, 900
BstMBI	GATC	3 cut(s)	8, 114, 997
BstMCI	CGRYCG	1 cut(s)	986
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 493, 1180
BstNI	CCWGG	2 cut(s)	735, 953
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	733, 951
BstV1I	GCAGC	5 cut(s)	319, 991, 1124, 1145, 1186
BstX2I	RGATCY	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	1202
BstYI	RGATCY	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	1038
BsuRI	GGCC	3 cut(s)	496, 909, 949
BtrI	CACGTC	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	1004
BtsIMutI	CAGTG	2 cut(s)	58, 1004
BveI	ACCTGC	2 cut(s)	787, 813
Cac8I	GCNNGC	1 cut(s)	911
CaiI	CAGNNNCTG	1 cut(s)	1006
Cfr13I	GGNCC	4 cut(s)	229, 908, 948, 1055
CseI	GACGC	1 cut(s)	1073
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	8 cut(s)	70, 226, 412, 422, 863, 873, 1068, 1210
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	6 cut(s)	17, 124, 132, 213, 714, 1038
DpnI	GATC	3 cut(s)	10, 116, 999
DpnII	GATC	3 cut(s)	8, 114, 997
Eam1104I	CTCTTC	2 cut(s)	34, 355
EarI	CTCTTC	2 cut(s)	34, 355
Eco130I	CCWWGG	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	229, 1055
Eco57I	CTGAAG	3 cut(s)	82, 204, 299
Eco81I	CCTNAGG	1 cut(s)	1038
EcoRII	CCWGG	2 cut(s)	733, 951
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	8 cut(s)	73, 229, 415, 425, 866, 876, 1071, 1213
FaqI	GGGAC	3 cut(s)	260, 410, 869
FatI	CATG	8 cut(s)	69, 225, 411, 421, 862, 872, 1067, 1209
FauI	CCCGC	1 cut(s)	918
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	997
Fnu4HI	GCNGC	5 cut(s)	333, 980, 1113, 1134, 1175
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	5 cut(s)	333, 980, 1113, 1134, 1175
FspBI	CTAG	5 cut(s)	429, 441, 558, 654, 918
GluI	GCNGC	5 cut(s)	333, 980, 1113, 1134, 1175
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	496, 909, 949
HapII	CCGG	1 cut(s)	1178
HgaI	GACGC	1 cut(s)	1073
Hin1II	CATG	8 cut(s)	73, 229, 415, 425, 866, 876, 1071, 1213
HincII	GTYRAC	2 cut(s)	377, 923
HindII	GTYRAC	2 cut(s)	377, 923
HinfI	GANTC	2 cut(s)	373, 1157
HpaII	CCGG	1 cut(s)	1178
HphI	GGTGA	1 cut(s)	1136
Hpy166II	GTNNAC	6 cut(s)	109, 377, 517, 603, 923, 940
Hpy188I	TCNGA	4 cut(s)	214, 405, 616, 766
Hpy8I	GTNNAC	6 cut(s)	109, 377, 517, 603, 923, 940
HpyAV	CCTTC	4 cut(s)	639, 758, 846, 1123
HpyCH4III	ACNGT	4 cut(s)	53, 607, 944, 1023
HpyCH4IV	ACGT	2 cut(s)	476, 1104
HpyCH4V	TGCA	3 cut(s)	351, 588, 1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 493, 1180
HpyF3I	CTNAG	6 cut(s)	17, 124, 132, 213, 714, 1038
HpySE526I	ACGT	2 cut(s)	476, 1104
Hsp92II	CATG	8 cut(s)	73, 229, 415, 425, 866, 876, 1071, 1213
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	3 cut(s)	8, 114, 997
LguI	GCTCTTC	2 cut(s)	34, 355
LmnI	GCTCC	2 cut(s)	165, 1180
Lsp1109I	GCAGC	5 cut(s)	319, 991, 1124, 1145, 1186
LweI	GCATC	4 cut(s)	250, 396, 445, 551
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	5 cut(s)	429, 441, 558, 654, 918
MaeII	ACGT	2 cut(s)	476, 1104
MaeIII	GTNAC	1 cut(s)	1002
MalI	GATC	3 cut(s)	10, 116, 999
MbiI	CCGCTC	1 cut(s)	913
MboI	GATC	3 cut(s)	8, 114, 997
MboII	GAAGA	8 cut(s)	51, 88, 148, 197, 305, 372, 701, 1106
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	789
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	3 cut(s)	234, 267, 1200
MslI	CAYNNNNRTG	2 cut(s)	28, 1200
MspA1I	CMGCKG	1 cut(s)	982
MspI	CCGG	1 cut(s)	1178
MspR9I	CCNGG	2 cut(s)	735, 953
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	2 cut(s)	735, 953
MwoI	GCNNNNNNNGC	3 cut(s)	157, 493, 1180
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	8, 114, 997
NlaIII	CATG	8 cut(s)	73, 229, 415, 425, 866, 876, 1071, 1213
NlaIV	GGNNCC	2 cut(s)	62, 950
NmuCI	GTSAC	1 cut(s)	1002
NspI	RCATGY	1 cut(s)	425
PciSI	GCTCTTC	2 cut(s)	34, 355
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	1 cut(s)	1157
PkrI	GCNGC	5 cut(s)	334, 981, 1114, 1135, 1176
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	733, 951
PspGI	CCWGG	2 cut(s)	733, 951
PspN4I	GGNNCC	2 cut(s)	62, 950
PspPI	GGNCC	4 cut(s)	229, 908, 948, 1055
PstNI	CAGNNNCTG	1 cut(s)	1006
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	2 cut(s)	28, 1200
SapI	GCTCTTC	2 cut(s)	34, 355
SaqAI	TTAA	3 cut(s)	234, 267, 1200
SatI	GCNGC	5 cut(s)	333, 980, 1113, 1134, 1175
Sau3AI	GATC	3 cut(s)	8, 114, 997
Sau96I	GGNCC	4 cut(s)	229, 908, 948, 1055
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	735, 953
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	4 cut(s)	250, 396, 445, 551
SinI	GGWCC	2 cut(s)	229, 1055
SmiMI	CAYNNNNRTG	2 cut(s)	28, 1200
SsiI	CCGC	4 cut(s)	901, 911, 982, 1126
SspMI	CTAG	5 cut(s)	429, 441, 558, 654, 918
StyD4I	CCNGG	2 cut(s)	733, 951
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	4 cut(s)	53, 607, 944, 1023
TaiI	ACGT	2 cut(s)	479, 1107
TaqI	TCGA	1 cut(s)	986
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	1157
Tru1I	TTAA	3 cut(s)	234, 267, 1200
Tru9I	TTAA	3 cut(s)	234, 267, 1200
TscAI	CASTG	2 cut(s)	58, 1011
TseFI	GTSAC	1 cut(s)	1002
TseI	GCWGC	5 cut(s)	332, 979, 1112, 1133, 1174
Tsp45I	GTSAC	1 cut(s)	1002
TspDTI	ATGAA	2 cut(s)	42, 611
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	2 cut(s)	58, 1011
VpaK11BI	GGWCC	2 cut(s)	229, 1055
XapI	RAATTY	2 cut(s)	508, 1163
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1065
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	5 cut(s)	429, 441, 558, 654, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.