RLG00000011553

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010191
Physical Location & Seq
Reverse (-)
10486903 .. 10488601
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011553

Sequence Viewer

Length: 1191 bp
ATGCCAAGATCAGGCCCCAGACCCTATGAGTGTATCAGGAGAGCTTGGCACAGTGATAGGCACCAGCCTGTGAGAGGTTCTCTCATTAAAGAGATTTTCAGTGTGGCGAATGAGATCCATAGCTCAGCTACTAGGAAGAACAAGGAATGGCAAGAGAAGCTCCCTATTGTTGTGTTGAAAGCAGAAGAGATTATGTACTCTAAAGCCAATTCTGAGGCCGAATATACAGACCTTAAAACGCTTTGGGACCGGGCAAATGATGCCATTAATACCATAATTCGCCGCGATGAAAGCATTGAAACTGGGGAAGAGTTTCTTCAGCCTTGTATTGAAGCTGCTCTCAATCTGGGGTGTGTAGCAAGAAGAGCTTCCAGGAGCCAACGGTATTCTAATCCAAGGTGTTATCTGAGCCCCATCACTTCTGATGTCCCTAGTGTGGTAAAAGGTAGTCAAATGGATAATATTTCCAATCCACAGTGTACCCCTCATTGTTCGAACTTTGTGAAACCCATTACTATTAACTCAACCCATCTTGGCCCCGAATCCACTGTGAAATCTACCTCTGCAGCCGAAAATGTTCCTCCTTGTGGTTATGACCAATGCTCTTCTAGGGATATTCGGGCAACATCTAATATCTCTTCATATCCTCTATACTATGGGAACTGCCCTCAGTTTGAAGAACTCAAGCATGGTTTTGTTAGCCTTCCCAAACCAGTTCCGAACCTTATAAAGCCGGCCAAGATGAGTGTTATCCCAAACCTGTTTAGAAATGGAGATAAACCAAGCAACAGTACTCAGAAAGGTCCAAGGGACTACCCTGATCAGAGCCCAGATACAATTGGGTGTGATCTCTCTCTCCGGTTAGGCTCACTCTCTAGTCGATGCCCAGGCAGTGAAAGCAATCCTGCACAGAAAGCCAAAGATGTTGGTGTGCAAGAAGGGAGCAAGTGTACTAATCAGCCTTCACAACTGGACAGAGAGCTGTCTTTCTCTCCTAAAGGTAATGACCGTGTCCCAATAGGCTCGAATTCAGGTCGGTGGAGTTTTGAGGGCGAGTTTATGAATGTACAATCAACAATGAGAAAGCGAAAGGCAGATTTTAATCACCCAACTGAGGATACCAAATTTTGTAGGCAGCCAGAGCTTCCGTTCAGCCGCTTGACTGGAAGTATGGGAAATGGAGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

44.07

Weight (kDa)

8.61

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
AccB1I GGYRCC 1 cut(s) 60
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 283, 1156
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 2 cut(s) 1027, 1124
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 5 cut(s) 197, 481, 793, 952, 1068
AfiI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 587, 1114
AgsI TTSAA 4 cut(s) 178, 299, 332, 677
AjnI CCWGG 2 cut(s) 371, 886
AluBI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 982, 1144
AluI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 982, 1144
AlwI GGATC 1 cut(s) 109
AoxI GGCC 4 cut(s) 13, 216, 535, 735
ApeKI GCWGC 3 cut(s) 335, 566, 1135
ApoI RAATTY 2 cut(s) 1027, 1124
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 3 cut(s) 312, 367, 576
AspS9I GGNCC 4 cut(s) 14, 247, 536, 803
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 1097
AsuII TTCGAA 1 cut(s) 494
AvaII GGWCC 2 cut(s) 247, 803
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 2 cut(s) 413, 830
BbvI GCAGC 3 cut(s) 322, 578, 1147
BccI CCATC 2 cut(s) 422, 537
BciT130I CCWGG 2 cut(s) 373, 888
BciVI GTATCC 1 cut(s) 1111
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 1 cut(s) 251
BfaI CTAG 4 cut(s) 132, 432, 609, 876
BfmI CTRYAG 1 cut(s) 564
BfuI GTATCC 1 cut(s) 1111
BisI GCNGC 5 cut(s) 283, 336, 567, 1136, 1156
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 5 cut(s) 284, 337, 568, 1137, 1157
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 3 cut(s) 251, 373, 888
Bme18I GGWCC 2 cut(s) 247, 803
BmgT120I GGNCC 4 cut(s) 14, 247, 536, 803
BmiI GGNNCC 5 cut(s) 16, 62, 248, 377, 538
BmrFI CCNGG 3 cut(s) 251, 373, 888
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 250, 872
BmuI ACTGGG 1 cut(s) 312
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 66, 98
Bpu1102I GCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 1101
BsaJI CCNNGG 3 cut(s) 395, 806, 886
BsaWI WCCGGW 1 cut(s) 858
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 74, 436, 587, 1114
Bse118I RCCGGY 1 cut(s) 733
Bse1I ACTGG 4 cut(s) 307, 713, 975, 1168
Bse8I GATNNNNATC 1 cut(s) 1101
BseBI CCWGG 2 cut(s) 373, 888
BseDI CCNNGG 3 cut(s) 395, 806, 886
BseJI GATNNNNATC 1 cut(s) 1101
BseLI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 587, 1114
BseMII CTCAG 6 cut(s) 138, 204, 398, 683, 809, 1104
BseNI ACTGG 4 cut(s) 307, 713, 975, 1168
BseXI GCAGC 3 cut(s) 322, 578, 1147
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 4 cut(s) 15, 218, 537, 737
BshNI GGYRCC 1 cut(s) 60
BsiSI CCGG 3 cut(s) 250, 734, 859
BslFI GGGAC 4 cut(s) 260, 413, 824, 998
BslI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 587, 1114
BsmFI GGGAC 4 cut(s) 260, 413, 824, 998
BsnI GGCC 4 cut(s) 15, 218, 537, 737
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 413, 830
Bsp1407I TGTACA 1 cut(s) 1066
Bsp143I GATC 4 cut(s) 8, 114, 820, 847
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 283, 1156
BspANI GGCC 4 cut(s) 15, 218, 537, 737
BspCNI CTCAG 6 cut(s) 137, 205, 399, 682, 808, 1105
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 5 cut(s) 16, 62, 248, 377, 538
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 2 cut(s) 358, 610
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 733
BsrGI TGTACA 1 cut(s) 1066
BsrI ACTGG 4 cut(s) 307, 713, 975, 1168
BssAI RCCGGY 1 cut(s) 733
BssECI CCNNGG 3 cut(s) 395, 806, 886
BssMI GATC 4 cut(s) 8, 114, 820, 847
BssT1I CCWWGG 2 cut(s) 395, 806
Bst2UI CCWGG 2 cut(s) 373, 888
Bst4CI ACNGT 6 cut(s) 53, 384, 477, 550, 791, 1010
Bst6I CTCTTC 5 cut(s) 180, 303, 358, 610, 643
BstAPI GCANNNNNTGC 1 cut(s) 260
BstAUI TGTACA 1 cut(s) 1066
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 6 cut(s) 124, 213, 407, 669, 795, 1113
BstENI CCTNNNNNAGG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 4 cut(s) 11, 117, 823, 850
BstMBI GATC 4 cut(s) 8, 114, 820, 847
BstMWI GCNNNNNNNGC 7 cut(s) 157, 260, 291, 365, 897, 914, 1141
BstNI CCWGG 2 cut(s) 373, 888
BstSCI CCNGG 3 cut(s) 249, 371, 886
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 322, 578, 1147
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 4 cut(s) 15, 218, 537, 737
BtgZI GCGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 898
BtsIMutI CAGTG 5 cut(s) 58, 106, 482, 546, 898
Cac8I GCNNGC 1 cut(s) 735
Cfr10I RCCGGY 1 cut(s) 733
Cfr13I GGNCC 4 cut(s) 14, 247, 536, 803
Csp6I GTAC 5 cut(s) 196, 480, 792, 951, 1067
CviAII CATG 1 cut(s) 689
CviQI GTAC 5 cut(s) 196, 480, 792, 951, 1067
DdeI CTNAG 6 cut(s) 124, 213, 407, 669, 795, 1113
DpnI GATC 4 cut(s) 10, 116, 822, 849
DpnII GATC 4 cut(s) 8, 114, 820, 847
EaeI YGGCCR 1 cut(s) 735
Eam1104I CTCTTC 5 cut(s) 180, 303, 358, 610, 643
EarI CTCTTC 5 cut(s) 180, 303, 358, 610, 643
Eco130I CCWWGG 2 cut(s) 395, 806
Eco24I GRGCYC 2 cut(s) 413, 830
Eco47I GGWCC 2 cut(s) 247, 803
Eco57I CTGAAG 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 371, 886
EcoT14I CCWWGG 2 cut(s) 395, 806
EcoT38I GRGCYC 2 cut(s) 413, 830
ErhI CCWWGG 2 cut(s) 395, 806
FaeI CATG 1 cut(s) 692
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 352, 384
FaqI GGGAC 4 cut(s) 260, 413, 824, 998
FatI CATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 5 cut(s) 283, 336, 567, 1136, 1156
FriOI GRGCYC 2 cut(s) 413, 830
Fsp4HI GCNGC 5 cut(s) 283, 336, 567, 1136, 1156
FspBI CTAG 4 cut(s) 132, 432, 609, 876
GluI GCNGC 5 cut(s) 283, 336, 567, 1136, 1156
HaeIII GGCC 4 cut(s) 15, 218, 537, 737
HapII CCGG 3 cut(s) 250, 734, 859
Hin1II CATG 1 cut(s) 692
HinfI GANTC 1 cut(s) 542
HpaII CCGG 3 cut(s) 250, 734, 859
HphI GGTGA 1 cut(s) 1097
Hpy166II GTNNAC 2 cut(s) 480, 951
Hpy188I TCNGA 6 cut(s) 214, 408, 424, 720, 798, 825
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 480, 951
HpyAV CCTTC 3 cut(s) 713, 932, 972
HpyCH4III ACNGT 6 cut(s) 53, 384, 477, 550, 791, 1010
HpyCH4V TGCA 3 cut(s) 566, 908, 934
HpyF10VI GCNNNNNNNGC 7 cut(s) 157, 260, 291, 365, 897, 914, 1141
HpyF3I CTNAG 6 cut(s) 124, 213, 407, 669, 795, 1113
Hsp92II CATG 1 cut(s) 692
KroI GCCGGC 1 cut(s) 733
KroNI GCCGGC 1 cut(s) 735
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 8, 114, 820, 847
LguI GCTCTTC 2 cut(s) 358, 610
LmnI GCTCC 3 cut(s) 165, 375, 942
Lsp1109I GCAGC 3 cut(s) 322, 578, 1147
LweI GCATC 2 cut(s) 250, 872
MaeI CTAG 4 cut(s) 132, 432, 609, 876
MalI GATC 4 cut(s) 10, 116, 822, 849
MboI GATC 4 cut(s) 8, 114, 820, 847
MboII GAAGA 8 cut(s) 148, 197, 308, 320, 375, 597, 630, 689
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 413, 830
MluCI AATT 5 cut(s) 208, 276, 837, 1027, 1124
MnlI CCTC 9 cut(s) 68, 208, 495, 571, 591, 657, 678, 1042, 1108
MroNI GCCGGC 1 cut(s) 733
MroXI GAANNNNTTC 3 cut(s) 312, 367, 576
MseI TTAA 5 cut(s) 87, 234, 267, 519, 1101
MspI CCGG 3 cut(s) 250, 734, 859
MspR9I CCNGG 3 cut(s) 251, 373, 888
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 2 cut(s) 373, 888
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 7 cut(s) 157, 260, 291, 365, 897, 914, 1141
NaeI GCCGGC 1 cut(s) 735
NciI CCSGG 1 cut(s) 251
NdeII GATC 4 cut(s) 8, 114, 820, 847
NgoMIV GCCGGC 1 cut(s) 733
NlaIII CATG 1 cut(s) 692
NlaIV GGNNCC 5 cut(s) 16, 62, 248, 377, 538
NspV TTCGAA 1 cut(s) 494
PciSI GCTCTTC 2 cut(s) 358, 610
PdiI GCCGGC 1 cut(s) 735
PdmI GAANNNNTTC 3 cut(s) 312, 367, 576
PfeI GAWTC 1 cut(s) 542
PflFI GACNNNGTC 1 cut(s) 1010
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 5 cut(s) 284, 337, 568, 1137, 1157
PshBI ATTAAT 1 cut(s) 267
PsiI TTATAA 1 cut(s) 728
Psp6I CCWGG 2 cut(s) 371, 886
PspGI CCWGG 2 cut(s) 371, 886
PspN4I GGNNCC 5 cut(s) 16, 62, 248, 377, 538
PspPI GGNCC 4 cut(s) 14, 247, 536, 803
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 1010
RsaI GTAC 5 cut(s) 197, 481, 793, 952, 1068
RsaNI GTAC 5 cut(s) 196, 480, 792, 951, 1067
SapI GCTCTTC 2 cut(s) 358, 610
SaqAI TTAA 5 cut(s) 87, 234, 267, 519, 1101
SatI GCNGC 5 cut(s) 283, 336, 567, 1136, 1156
Sau3AI GATC 4 cut(s) 8, 114, 820, 847
Sau96I GGNCC 4 cut(s) 14, 247, 536, 803
ScaI AGTACT 1 cut(s) 793
ScrFI CCNGG 3 cut(s) 251, 373, 888
SduI GDGCHC 2 cut(s) 413, 830
SfaNI GCATC 2 cut(s) 250, 872
SfcI CTRYAG 1 cut(s) 564
SfuI TTCGAA 1 cut(s) 494
SinI GGWCC 2 cut(s) 247, 803
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 5 cut(s) 208, 276, 837, 1027, 1124
SsiI CCGC 2 cut(s) 283, 1156
SspI AATATT 1 cut(s) 463
SspMI CTAG 4 cut(s) 132, 432, 609, 876
StyD4I CCNGG 3 cut(s) 249, 371, 886
StyI CCWWGG 2 cut(s) 395, 806
TaaI ACNGT 6 cut(s) 53, 384, 477, 550, 791, 1010
TaqI TCGA 3 cut(s) 494, 880, 1025
TasI AATT 5 cut(s) 208, 276, 837, 1027, 1124
TatI WGTACW 4 cut(s) 195, 791, 950, 1066
TauI GCSGC 2 cut(s) 285, 1158
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 5 cut(s) 87, 234, 267, 519, 1101
Tru9I TTAA 5 cut(s) 87, 234, 267, 519, 1101
TscAI CASTG 5 cut(s) 58, 106, 482, 553, 898
TseI GCWGC 3 cut(s) 335, 566, 1135
TspDTI ATGAA 3 cut(s) 303, 630, 1076
TspGWI ACGGA 1 cut(s) 1137
TspRI CASTG 5 cut(s) 58, 106, 482, 553, 898
Tth111I GACNNNGTC 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 247, 803
VspI ATTAAT 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 2 cut(s) 1027, 1124
XmnI GAANNNNTTC 3 cut(s) 312, 367, 576
XspI CTAG 4 cut(s) 132, 432, 609, 876
ZrmI AGTACT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.