Rroxscaffold_7G00178980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010191
Physical Location & Seq
Reverse (-)
18557716 .. 18559910
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178980.1

Sequence Viewer

Length: 1194 bp
ATGCCAAGATCAGGCCCAAGACCCTATGAGTGTATCAGGAGAGCTTGGCACAGTGATAGGCACCAGCCTGTGAGAGGTTCTCTCATTAAAGAGATTTTCAGTGTGGCGAATGAGATCCATAGCTCAGCTACTAGGAAGAACAAGGAATGGCAAGAGAAGCTCCCTATTGTTGTGTTCAAAGCAGAAGAGATTATGTACTCTAAAGCCAATTCTGAGGCCGAATATACGGACCTTAAAACGCTTTGGGACCGGGCAAATGATGCCATTAATACCATAATTCGCCGCGATGAAAGCACTGAAACTGGGGAAGAGTTTCTTCAGCCTTGTATTGAAGCTGCTCTCAATCTGGGGTGTGTAGCAAGAAGAGCTTCCAGGAGCCAACGGTATTCTAATCCAAGGTGTTATCTGAGCCCCATCACTTCTGATGTCCCTAGTGTGGTAGAGAAAGGTAGTCAAAAGGATAATATTTCCAATCCACAGTATACCCCTCATTGTTCGAACTTTGTGAAACCCATTACTATTAACTCAACCCATCTTGGCCCTGAATCCACTATGAAATCTACCTCTGCAGCCGAAAATGTTCCTCCTTGTGGTTACGACCAATGCTCTCCTAGGGATATTCGGGCAACATCTAATATCTCTTCATATCCTCTATACTATGGGAACTGCCCTCAGTTTGAAGAACTCAAGCATGGTTTTGTTAGCCTTCCCAAACCAGTTCCGAACCCTATAAAGCCGGCCAAGATGAGTGTTATCCCAAACCTGTTCAGAAATGGAGATAAACCAAGCAACAGTACTCAGAAAGGTCCAAGGGACTACCCTGATCAGAGCCCAGATACAATTGGGTGTGATCTCTCTCTCCGGTTAGGCTCACTCTCTAGTCGATGCCCGGACAGTGAAAGCAATCATGCACAGAAAGTCAAAGATGTTGGTGCTCAAGAAGGGAGCAAGTGTACTGATCAGCCTTCACAATTGGACAAAGAGCTGTCTTTCTTTCCTAAAGGTAATGACGGTGTCCCAATAGGCTCGAATTCAGGTCGGTGGAGTTTTGAGGGCGAGTTTATGAATGTGCAATCAACAATGAGAAAGCGAAAGGCAGGTTTTAATCACCCCACTGAGGATACTAAATTTTGTAGGCAGCCAGAGCTTCCGTTCAGCCGCTTGACTGGAAGTATGGGAAATGGAGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

44.28

Weight (kDa)

8.36

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 482
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 283, 1159
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 2 cut(s) 1030, 1127
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 3 cut(s) 197, 796, 955
AfiI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 590, 1117
AgsI TTSAA 3 cut(s) 178, 332, 680
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 985, 1147
AluI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 985, 1147
Alw21I GWGCWC 1 cut(s) 937
AlwI GGATC 1 cut(s) 109
AoxI GGCC 4 cut(s) 13, 216, 538, 738
ApeKI GCWGC 3 cut(s) 335, 569, 1138
ApoI RAATTY 2 cut(s) 1030, 1127
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 3 cut(s) 312, 367, 579
AspA2I CCTAGG 1 cut(s) 611
AspS9I GGNCC 5 cut(s) 14, 229, 247, 539, 806
AsuC2I CCSGG 2 cut(s) 251, 890
AsuHPI GGTGA 1 cut(s) 1100
AsuII TTCGAA 1 cut(s) 497
AvaII GGWCC 3 cut(s) 229, 247, 806
AvrII CCTAGG 1 cut(s) 611
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 2 cut(s) 413, 833
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 3 cut(s) 322, 581, 1150
BccI CCATC 2 cut(s) 422, 540
BciT130I CCWGG 1 cut(s) 373
BciVI GTATCC 1 cut(s) 1114
BclI TGATCA 2 cut(s) 823, 958
BcnI CCSGG 2 cut(s) 251, 890
BfaI CTAG 4 cut(s) 132, 432, 612, 879
BfmI CTRYAG 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 1088
BfuI GTATCC 1 cut(s) 1114
BisI GCNGC 5 cut(s) 283, 336, 570, 1139, 1159
BlnI CCTAGG 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 5 cut(s) 284, 337, 571, 1140, 1160
BmcAI AGTACT 1 cut(s) 796
Bme1390I CCNGG 3 cut(s) 251, 373, 890
Bme18I GGWCC 3 cut(s) 229, 247, 806
BmgT120I GGNCC 5 cut(s) 14, 229, 247, 539, 806
BmiI GGNNCC 3 cut(s) 62, 248, 377
BmrFI CCNGG 3 cut(s) 251, 373, 890
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 250, 875
BmuI ACTGGG 1 cut(s) 312
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 66, 98
Bpu1102I GCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 2 cut(s) 671, 921
BpuMI CCSGG 2 cut(s) 251, 890
BsaJI CCNNGG 3 cut(s) 395, 611, 809
BsaWI WCCGGW 1 cut(s) 861
BsaXI ACNNNNNCTCC 2 cut(s) 937, 967
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 74, 436, 590, 1117
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 3 cut(s) 307, 716, 1171
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 3 cut(s) 395, 611, 809
BseLI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 590, 1117
BseMII CTCAG 6 cut(s) 138, 204, 398, 686, 812, 1107
BseNI ACTGG 3 cut(s) 307, 716, 1171
BseXI GCAGC 3 cut(s) 322, 581, 1150
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 4 cut(s) 15, 218, 540, 740
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 937
BsiSI CCGG 4 cut(s) 250, 737, 862, 890
BslFI GGGAC 4 cut(s) 260, 413, 827, 1001
BslI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 590, 1117
BsmFI GGGAC 4 cut(s) 260, 413, 827, 1001
BsnI GGCC 4 cut(s) 15, 218, 540, 740
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 3 cut(s) 413, 833, 937
Bsp143I GATC 5 cut(s) 8, 114, 823, 850, 958
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 283, 1159
BspANI GGCC 4 cut(s) 15, 218, 540, 740
BspCNI CTCAG 6 cut(s) 137, 205, 399, 685, 811, 1108
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 62, 248, 377
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 3 cut(s) 307, 716, 1171
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 3 cut(s) 395, 611, 809
BssMI GATC 5 cut(s) 8, 114, 823, 850, 958
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 3 cut(s) 395, 611, 809
Bst1107I GTATAC 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 6 cut(s) 53, 384, 480, 794, 896, 1013
Bst6I CTCTTC 4 cut(s) 180, 303, 358, 646
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 6 cut(s) 124, 213, 407, 672, 798, 1116
BstENI CCTNNNNNAGG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 5 cut(s) 11, 117, 826, 853, 961
BstMBI GATC 5 cut(s) 8, 114, 823, 850, 958
BstMWI GCNNNNNNNGC 5 cut(s) 157, 260, 291, 365, 1144
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 3 cut(s) 249, 371, 888
BstSFI CTRYAG 1 cut(s) 567
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 322, 581, 1150
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BstZ17I GTATAC 1 cut(s) 483
BsuI GTATCC 1 cut(s) 1114
BsuRI GGCC 4 cut(s) 15, 218, 540, 740
BtgZI GCGATG 1 cut(s) 300
BtsIMutI CAGTG 5 cut(s) 58, 106, 294, 901, 1113
BveI ACCTGC 1 cut(s) 1088
Cac8I GCNNGC 1 cut(s) 738
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 5 cut(s) 14, 229, 247, 539, 806
Csp6I GTAC 3 cut(s) 196, 795, 954
CviAII CATG 2 cut(s) 692, 908
CviQI GTAC 3 cut(s) 196, 795, 954
DdeI CTNAG 6 cut(s) 124, 213, 407, 672, 798, 1116
DpnI GATC 5 cut(s) 10, 116, 825, 852, 960
DpnII GATC 5 cut(s) 8, 114, 823, 850, 958
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 4 cut(s) 180, 303, 358, 646
EarI CTCTTC 4 cut(s) 180, 303, 358, 646
Eco130I CCWWGG 3 cut(s) 395, 611, 809
Eco24I GRGCYC 2 cut(s) 413, 833
Eco47I GGWCC 3 cut(s) 229, 247, 806
Eco57I CTGAAG 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 1030
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 3 cut(s) 395, 611, 809
EcoT38I GRGCYC 2 cut(s) 413, 833
ErhI CCWWGG 3 cut(s) 395, 611, 809
FaeI CATG 2 cut(s) 695, 911
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 352, 384
FaqI GGGAC 4 cut(s) 260, 413, 827, 1001
FatI CATG 2 cut(s) 691, 907
FbaI TGATCA 2 cut(s) 823, 958
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 5 cut(s) 283, 336, 570, 1139, 1159
FriOI GRGCYC 2 cut(s) 413, 833
Fsp4HI GCNGC 5 cut(s) 283, 336, 570, 1139, 1159
FspBI CTAG 4 cut(s) 132, 432, 612, 879
GluI GCNGC 5 cut(s) 283, 336, 570, 1139, 1159
HaeIII GGCC 4 cut(s) 15, 218, 540, 740
HapII CCGG 4 cut(s) 250, 737, 862, 890
Hin1II CATG 2 cut(s) 695, 911
HinfI GANTC 1 cut(s) 545
HpaII CCGG 4 cut(s) 250, 737, 862, 890
HphI GGTGA 1 cut(s) 1100
Hpy166II GTNNAC 2 cut(s) 483, 954
Hpy188I TCNGA 7 cut(s) 214, 408, 424, 723, 770, 801, 828
Hpy188III TCNNGA 2 cut(s) 37, 938
Hpy8I GTNNAC 2 cut(s) 483, 954
HpyAV CCTTC 3 cut(s) 716, 935, 975
HpyCH4III ACNGT 6 cut(s) 53, 384, 480, 794, 896, 1013
HpyCH4V TGCA 3 cut(s) 569, 911, 1072
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 260, 291, 365, 1144
HpyF3I CTNAG 6 cut(s) 124, 213, 407, 672, 798, 1116
Hsp92II CATG 2 cut(s) 695, 911
KroI GCCGGC 1 cut(s) 736
KroNI GCCGGC 1 cut(s) 738
Ksp22I TGATCA 2 cut(s) 823, 958
Kzo9I GATC 5 cut(s) 8, 114, 823, 850, 958
LguI GCTCTTC 1 cut(s) 358
LmnI GCTCC 3 cut(s) 165, 375, 945
Lsp1109I GCAGC 3 cut(s) 322, 581, 1150
LweI GCATC 2 cut(s) 250, 875
MaeI CTAG 4 cut(s) 132, 432, 612, 879
MaeIII GTNAC 1 cut(s) 593
MalI GATC 5 cut(s) 10, 116, 825, 852, 960
MboI GATC 5 cut(s) 8, 114, 823, 850, 958
MboII GAAGA 7 cut(s) 148, 197, 308, 320, 375, 633, 692
MfeI CAATTG 2 cut(s) 840, 971
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 3 cut(s) 413, 833, 937
MluCI AATT 6 cut(s) 208, 276, 840, 971, 1030, 1127
MnlI CCTC 9 cut(s) 68, 208, 498, 574, 594, 660, 681, 1045, 1111
MroNI GCCGGC 1 cut(s) 736
MroXI GAANNNNTTC 3 cut(s) 312, 367, 579
MseI TTAA 5 cut(s) 87, 234, 267, 522, 1104
MspI CCGG 4 cut(s) 250, 737, 862, 890
MspR9I CCNGG 3 cut(s) 251, 373, 890
MunI CAATTG 2 cut(s) 840, 971
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 157, 260, 291, 365, 1144
NaeI GCCGGC 1 cut(s) 738
NciI CCSGG 2 cut(s) 251, 890
NdeII GATC 5 cut(s) 8, 114, 823, 850, 958
NgoMIV GCCGGC 1 cut(s) 736
NlaIII CATG 2 cut(s) 695, 911
NlaIV GGNNCC 3 cut(s) 62, 248, 377
NspV TTCGAA 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 738
PdmI GAANNNNTTC 3 cut(s) 312, 367, 579
PfeI GAWTC 1 cut(s) 545
PflFI GACNNNGTC 1 cut(s) 1013
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 5 cut(s) 284, 337, 571, 1140, 1160
PshBI ATTAAT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 62, 248, 377
PspPI GGNCC 5 cut(s) 14, 229, 247, 539, 806
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 1013
RsaI GTAC 3 cut(s) 197, 796, 955
RsaNI GTAC 3 cut(s) 196, 795, 954
SapI GCTCTTC 1 cut(s) 358
SaqAI TTAA 5 cut(s) 87, 234, 267, 522, 1104
SatI GCNGC 5 cut(s) 283, 336, 570, 1139, 1159
Sau3AI GATC 5 cut(s) 8, 114, 823, 850, 958
Sau96I GGNCC 5 cut(s) 14, 229, 247, 539, 806
ScaI AGTACT 1 cut(s) 796
ScrFI CCNGG 3 cut(s) 251, 373, 890
SduI GDGCHC 3 cut(s) 413, 833, 937
SfaNI GCATC 2 cut(s) 250, 875
SfcI CTRYAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 3 cut(s) 229, 247, 806
SmlI CTYRAG 2 cut(s) 686, 936
SmoI CTYRAG 2 cut(s) 686, 936
Sse9I AATT 6 cut(s) 208, 276, 840, 971, 1030, 1127
SsiI CCGC 2 cut(s) 283, 1159
SspI AATATT 1 cut(s) 466
SspMI CTAG 4 cut(s) 132, 432, 612, 879
StyD4I CCNGG 3 cut(s) 249, 371, 888
StyI CCWWGG 3 cut(s) 395, 611, 809
TaaI ACNGT 6 cut(s) 53, 384, 480, 794, 896, 1013
TaqI TCGA 3 cut(s) 497, 883, 1028
TasI AATT 6 cut(s) 208, 276, 840, 971, 1030, 1127
TatI WGTACW 3 cut(s) 195, 794, 953
TauI GCSGC 2 cut(s) 285, 1161
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 5 cut(s) 87, 234, 267, 522, 1104
Tru9I TTAA 5 cut(s) 87, 234, 267, 522, 1104
TscAI CASTG 5 cut(s) 58, 106, 301, 901, 1120
TseI GCWGC 3 cut(s) 335, 569, 1138
TspDTI ATGAA 4 cut(s) 303, 569, 633, 1079
TspGWI ACGGA 2 cut(s) 242, 1140
TspRI CASTG 5 cut(s) 58, 106, 301, 901, 1120
Tth111I GACNNNGTC 1 cut(s) 1013
VpaK11BI GGWCC 3 cut(s) 229, 247, 806
VspI ATTAAT 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 2 cut(s) 1030, 1127
XmaJI CCTAGG 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 482
XmnI GAANNNNTTC 3 cut(s) 312, 367, 579
XspI CTAG 4 cut(s) 132, 432, 612, 879
ZrmI AGTACT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.