Prupe.1G481300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010191
Physical Location & Seq
Reverse (-)
40182499 .. 40185045
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G481300.1

Sequence Viewer

Length: 1233 bp
ATGCCAAGATCAGGCCCAAGACCATATGAGTGTGTTAGAAGAGCTTGGCATAGTGAGAGACACCAACCCATGAGAGGTTCTCTCATTAAAGAAATTTTCAGGGTTGTGAATGAGATCCATAGCTCAGCTACCAGGAAGAACAAAGAATGGCAAGATAAGCTCCCTATTGTTGTCTTGAAAGCAGAAGAAATTATGTACTCAAAAGCAAATTCTGAGGCTGAATACATGGACCTTAAAACCCTTTGGGACCGAACAAATGATGCTATTAACACGATAATTCGGCGTGATGAGGGTACTGAAACTGGAGACTTTCTTCAGCCTTGTATTGAAGCTGCTCTCAATTTGGGGTGCATACCAAGAAGAACTTCGAGGAGTCAACGACATGCTAATCCATCGTGTTATCTGATTCCCATCACTTCCGATGTCCCTGGCATTTCTCCTAGCGTAGTTGAGAATGCTAGTCAGAGGGATTACACATCCAATTCACAGTATAGGCCTCATTGTCCAAATTTTGTGAAACCCAAAAGTATGACAACCCAACTTGGCTTTGAATCTAGATTCCCTGTTGTCCAAAATAATGACTGCACTACTATGAAATTCCGCATTGCTTCCGAAAATATTCCTCCTTCGGGTTATGACCAATTCTCCCCTAGGGAAAGTATGGCAACATCTAATTTTTCTTCATACCCTCTGCACTATAGAAATTTTCCTCAGTTTGAAGAACTCAAGCCTGGTTTTGTTATCCTTCCTAAGCCAGTTTCTGACCCAATAGAACCTGCCAAGATGGGAGTGATTTCCAATTTGCTCTGTAATGGAGATAAATCAAATGACAATACACAAACAGATACCAGGGACTACACCGAGAACCCATGTACAGTTGGGTGTGATTTGTCTCTGCGGTTAGGCCCACTGTCTACTCAGCACTCAATCGGTGAAAACAGCCAGCCTGAAGAGGTCAAAGATGTTGGTGCTCAGGAAGGGACCATGTGCAGTGATCAGTCACAACCACAATTTGATAGACGGCCCTCTTTCATTGGTAAGGGTAATGAATATGGCCCAAGAGACTCGTATTCAAGTAGGTTGAATTTTGAAGGTGAATATATGAATGTACAAGCGACAATGAGAAAGCGAAAGGCAGCTTTCAATCACCCAACAGGGGATACCAAATTTTATAGGCAGCCAGAGCTTCCTTTTAGTCACTTGACTGGAAGTATGAGAAATGGAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

46.45

Weight (kDa)

7.56

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 784
AccI GTMKAC 1 cut(s) 914
AciI CCGC 2 cut(s) 601, 898
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 7 cut(s) 93, 208, 508, 596, 703, 1084, 1166
AcuI CTGAAG 2 cut(s) 299, 969
AfaI GTAC 4 cut(s) 197, 295, 874, 1110
AfiI CCNNNNNNNGG 4 cut(s) 11, 74, 629, 1156
AgsI TTSAA 8 cut(s) 178, 329, 551, 719, 1074, 1084, 1091, 1144
AjnI CCWGG 4 cut(s) 131, 427, 730, 848
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 7 cut(s) 44, 123, 128, 160, 332, 1139, 1186
AluI AGCT 7 cut(s) 44, 123, 128, 160, 332, 1139, 1186
Alw21I GWGCWC 1 cut(s) 973
Alw26I GTCTC 4 cut(s) 52, 300, 897, 1056
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 5 cut(s) 13, 494, 904, 1022, 1054
ApeKI GCWGC 3 cut(s) 332, 1136, 1177
ApoI RAATTY 7 cut(s) 93, 208, 508, 596, 703, 1084, 1166
Asp700I GAANNNNTTC 2 cut(s) 364, 618
AspA2I CCTAGG 1 cut(s) 650
AspS9I GGNCC 7 cut(s) 14, 229, 247, 905, 981, 1023, 1055
AsuHPI GGTGA 3 cut(s) 944, 1106, 1139
AvaII GGWCC 3 cut(s) 229, 247, 981
AvrII CCTAGG 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 973
BbvI GCAGC 3 cut(s) 319, 1148, 1189
BccI CCATC 3 cut(s) 400, 419, 778
BceAI ACGGC 1 cut(s) 1037
BciT130I CCWGG 4 cut(s) 133, 429, 732, 850
BciVI GTATCC 1 cut(s) 1153
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 4 cut(s) 52, 300, 897, 1056
BfaI CTAG 4 cut(s) 441, 459, 555, 651
BfmI CTRYAG 1 cut(s) 697
BfuAI ACCTGC 1 cut(s) 784
BfuI GTATCC 1 cut(s) 1153
BisI GCNGC 3 cut(s) 333, 1137, 1178
BlnI CCTAGG 1 cut(s) 650
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 3 cut(s) 334, 1138, 1179
Bme1390I CCNGG 4 cut(s) 133, 429, 732, 850
Bme18I GGWCC 3 cut(s) 229, 247, 981
BmgT120I GGNCC 7 cut(s) 14, 229, 247, 905, 981, 1023, 1055
BmiI GGNNCC 2 cut(s) 248, 982
BmrFI CCNGG 4 cut(s) 133, 429, 732, 850
BmsI GCATC 1 cut(s) 250
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 66, 98
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 2 cut(s) 750, 972
Bpu1102I GCTNAGC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 710
BsaBI GATNNNNATC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 427, 650, 849
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 74, 629, 1156
Bse1I ACTGG 3 cut(s) 307, 755, 1210
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 4 cut(s) 133, 429, 732, 850
BseDI CCNNGG 3 cut(s) 427, 650, 849
BseGI GGATG 1 cut(s) 476
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 4 cut(s) 11, 74, 629, 1156
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 5 cut(s) 138, 204, 725, 932, 986
BseNI ACTGG 3 cut(s) 307, 755, 1210
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 3 cut(s) 319, 1148, 1189
BsgI GTGCAG 3 cut(s) 568, 677, 1009
BshFI GGCC 5 cut(s) 15, 496, 906, 1024, 1056
BsiHKAI GWGCWC 1 cut(s) 973
BslFI GGGAC 4 cut(s) 260, 410, 866, 994
BslI CCNNNNNNNGG 4 cut(s) 11, 74, 629, 1156
BsmAI GTCTC 4 cut(s) 52, 300, 897, 1056
BsmFI GGGAC 4 cut(s) 260, 410, 866, 994
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 5 cut(s) 15, 496, 906, 1024, 1056
Bsp1286I GDGCHC 1 cut(s) 973
Bsp1407I TGTACA 2 cut(s) 872, 1108
Bsp143I GATC 3 cut(s) 8, 114, 994
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 601, 898
BspANI GGCC 5 cut(s) 15, 496, 906, 1024, 1056
BspCNI CTCAG 5 cut(s) 137, 205, 724, 931, 985
BspLI GGNNCC 2 cut(s) 248, 982
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 603
BsrGI TGTACA 2 cut(s) 872, 1108
BsrI ACTGG 3 cut(s) 307, 755, 1210
BssECI CCNNGG 3 cut(s) 427, 650, 849
BssMI GATC 3 cut(s) 8, 114, 994
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 4 cut(s) 133, 429, 732, 850
Bst4CI ACNGT 3 cut(s) 489, 877, 912
Bst6I CTCTTC 2 cut(s) 34, 945
BstAUI TGTACA 2 cut(s) 872, 1108
BstC8I GCNNGC 1 cut(s) 944
BstDEI CTNAG 6 cut(s) 124, 213, 711, 750, 918, 972
BstF5I GGATG 1 cut(s) 476
BstKTI GATC 3 cut(s) 11, 117, 997
BstMAI GTCTC 4 cut(s) 52, 300, 897, 1056
BstMBI GATC 3 cut(s) 8, 114, 994
BstMWI GCNNNNNNNGC 2 cut(s) 157, 1183
BstNI CCWGG 4 cut(s) 133, 429, 732, 850
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 4 cut(s) 131, 427, 730, 848
BstSFI CTRYAG 1 cut(s) 697
BstV1I GCAGC 3 cut(s) 319, 1148, 1189
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BsuI GTATCC 1 cut(s) 1153
BsuRI GGCC 5 cut(s) 15, 496, 906, 1024, 1056
BtsCI GGATG 1 cut(s) 476
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 2 cut(s) 908, 997
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 1 cut(s) 944
CaiI CAGNNNCTG 1 cut(s) 761
Cfr13I GGNCC 7 cut(s) 14, 229, 247, 905, 981, 1023, 1055
Csp6I GTAC 4 cut(s) 196, 294, 873, 1109
CviAII CATG 5 cut(s) 70, 226, 383, 870, 985
CviQI GTAC 4 cut(s) 196, 294, 873, 1109
DdeI CTNAG 6 cut(s) 124, 213, 711, 750, 918, 972
DpnI GATC 3 cut(s) 10, 116, 996
DpnII GATC 3 cut(s) 8, 114, 994
Eam1104I CTCTTC 2 cut(s) 34, 945
EarI CTCTTC 2 cut(s) 34, 945
Eco130I CCWWGG 1 cut(s) 650
Eco147I AGGCCT 1 cut(s) 496
Eco47I GGWCC 3 cut(s) 229, 247, 981
Eco57I CTGAAG 2 cut(s) 299, 969
EcoRII CCWGG 4 cut(s) 131, 427, 730, 848
EcoT14I CCWWGG 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 5 cut(s) 73, 229, 386, 873, 988
FalI AAGNNNNNCTT 2 cut(s) 349, 381
FaqI GGGAC 4 cut(s) 260, 410, 866, 994
FatI CATG 5 cut(s) 69, 225, 382, 869, 984
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 994
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 3 cut(s) 333, 1137, 1178
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 3 cut(s) 333, 1137, 1178
FspBI CTAG 4 cut(s) 441, 459, 555, 651
GluI GCNGC 3 cut(s) 333, 1137, 1178
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 5 cut(s) 15, 496, 906, 1024, 1056
Hin1II CATG 5 cut(s) 73, 229, 386, 873, 988
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 5 cut(s) 373, 406, 551, 558, 1064
HphI GGTGA 3 cut(s) 944, 1106, 1139
Hpy166II GTNNAC 2 cut(s) 377, 915
Hpy188I TCNGA 6 cut(s) 214, 405, 421, 465, 613, 763
Hpy188III TCNNGA 3 cut(s) 175, 555, 974
Hpy8I GTNNAC 2 cut(s) 377, 915
HpyAV CCTTC 4 cut(s) 636, 755, 971, 1085
HpyCH4III ACNGT 3 cut(s) 489, 877, 912
HpyCH4V TGCA 4 cut(s) 351, 585, 694, 990
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 1183
HpyF3I CTNAG 6 cut(s) 124, 213, 711, 750, 918, 972
Hsp92II CATG 5 cut(s) 73, 229, 386, 873, 988
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 3 cut(s) 8, 114, 994
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 3 cut(s) 319, 1148, 1189
LweI GCATC 1 cut(s) 250
MaeI CTAG 4 cut(s) 441, 459, 555, 651
MaeIII GTNAC 2 cut(s) 999, 1196
MalI GATC 3 cut(s) 10, 116, 996
MboI GATC 3 cut(s) 8, 114, 994
MboII GAAGA 8 cut(s) 51, 148, 197, 305, 372, 672, 731, 962
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 973
MlyI GAGTC 2 cut(s) 382, 1058
MroXI GAANNNNTTC 2 cut(s) 364, 618
MseI TTAA 3 cut(s) 87, 234, 267
MslI CAYNNNNRTG 2 cut(s) 28, 590
MspR9I CCNGG 4 cut(s) 133, 429, 732, 850
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 4 cut(s) 133, 429, 732, 850
MwoI GCNNNNNNNGC 2 cut(s) 157, 1183
NdeI CATATG 1 cut(s) 25
NdeII GATC 3 cut(s) 8, 114, 994
NlaIII CATG 5 cut(s) 73, 229, 386, 873, 988
NlaIV GGNNCC 2 cut(s) 248, 982
NmuCI GTSAC 2 cut(s) 999, 1196
NspI RCATGY 1 cut(s) 386
PceI AGGCCT 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 34
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 364, 618
PfeI GAWTC 3 cut(s) 406, 551, 558
PkrI GCNGC 3 cut(s) 334, 1138, 1179
PleI GAGTC 2 cut(s) 381, 1058
PpsI GAGTC 2 cut(s) 381, 1058
Psp6I CCWGG 4 cut(s) 131, 427, 730, 848
PspGI CCWGG 4 cut(s) 131, 427, 730, 848
PspN4I GGNNCC 2 cut(s) 248, 982
PspPI GGNCC 7 cut(s) 14, 229, 247, 905, 981, 1023, 1055
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 4 cut(s) 197, 295, 874, 1110
RsaNI GTAC 4 cut(s) 196, 294, 873, 1109
RseI CAYNNNNRTG 2 cut(s) 28, 590
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 87, 234, 267
SatI GCNGC 3 cut(s) 333, 1137, 1178
Sau3AI GATC 3 cut(s) 8, 114, 994
Sau96I GGNCC 7 cut(s) 14, 229, 247, 905, 981, 1023, 1055
SchI GAGTC 2 cut(s) 382, 1058
ScrFI CCNGG 4 cut(s) 133, 429, 732, 850
SduI GDGCHC 1 cut(s) 973
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 697
SinI GGWCC 3 cut(s) 229, 247, 981
SmiMI CAYNNNNRTG 2 cut(s) 28, 590
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 2 cut(s) 601, 898
SspI AATATT 1 cut(s) 619
SspMI CTAG 4 cut(s) 441, 459, 555, 651
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 4 cut(s) 131, 427, 730, 848
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 3 cut(s) 489, 877, 912
TaqI TCGA 1 cut(s) 368
TaqII GACCGA 1 cut(s) 264
TatI WGTACW 3 cut(s) 195, 872, 1108
TfiI GAWTC 3 cut(s) 406, 551, 558
Tru1I TTAA 3 cut(s) 87, 234, 267
Tru9I TTAA 3 cut(s) 87, 234, 267
TscAI CASTG 2 cut(s) 915, 997
TseFI GTSAC 2 cut(s) 999, 1196
TseI GCWGC 3 cut(s) 332, 1136, 1177
Tsp45I GTSAC 2 cut(s) 999, 1196
TspDTI ATGAA 5 cut(s) 608, 672, 1021, 1062, 1118
TspRI CASTG 2 cut(s) 915, 997
VpaK11BI GGWCC 3 cut(s) 229, 247, 981
XapI RAATTY 7 cut(s) 93, 208, 508, 596, 703, 1084, 1166
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 914
XmnI GAANNNNTTC 2 cut(s) 364, 618
XspI CTAG 4 cut(s) 441, 459, 555, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.