Rorug06G0276700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010191
Physical Location & Seq
Reverse (-)
42408594 .. 42410975
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0276700.1

Sequence Viewer

Length: 525 bp
ATGTCGTCAATCGCAGATGAAGACTACTCAAGGTCGGTGACCCTAGAAACATCGTTTGGTGATTTCACCGTTGAGCTCTACTACAAGGACGCACCCAGGGCTTGCAGAAACTTCATGGAGCTCTCACGCGGGCATCATTATGACGGTGTCACATTCCACAGAGTCATCAAGAATTTTTTAGTGCAAGCTGGTGATCTTTCTGGGACAGGAAAGGGTATAAAATCAATTTACGGTGCAAAATTTGAGGACGAGATAAAACCCCAGTTGAATCATACTGCAGCGGGCATTCTATCCATGGCAAATACTGGTGCAAATACGAATGGAACCCAATTCTTCATCACGCTGGCACCGTGTCCATCACTGGACGGAAAGCACACCATATTTGGAAGAGTTTGCAGAGGAATGGATACAATCGTAGAAATTGGCAATGTCCCAACTGATGACAATGATAGGCCACTTGAAGATGTGATGATACTTGGAGCATCTGTCAAAGATGTAATCCATGAAATCAATGTATATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.12

Weight (kDa)

5.27

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 13 - 162 8.2e-51 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 129, 281
AcsI RAATTY 2 cut(s) 172, 239
AgsI TTSAA 2 cut(s) 268, 461
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 3 cut(s) 76, 121, 188
AluI AGCT 3 cut(s) 76, 121, 188
Alw21I GWGCWC 2 cut(s) 78, 123
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 172, 239
AsuHPI GGTGA 4 cut(s) 49, 58, 71, 203
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 78, 123
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 78, 123
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 1 cut(s) 400
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 325, 348
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 142, 491
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 13
BsaJI CCNNGG 3 cut(s) 95, 96, 294
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bse1I ACTGG 3 cut(s) 262, 310, 366
Bse3DI GCAATG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 95, 96, 294
BseMI GCAATG 1 cut(s) 433
BseNI ACTGG 3 cut(s) 262, 310, 366
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 78, 123
BslFI GGGAC 2 cut(s) 217, 416
BsmFI GGGAC 2 cut(s) 217, 416
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 78, 123
Bsp143I GATC 1 cut(s) 193
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 2 cut(s) 129, 281
BspANI GGCC 1 cut(s) 454
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 325, 348
BspMAI CTGCAG 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 3 cut(s) 262, 310, 366
BssECI CCNNGG 3 cut(s) 95, 96, 294
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 4 cut(s) 70, 146, 233, 351
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 5 cut(s) 103, 131, 186, 283, 345
BstDSI CCRYGG 1 cut(s) 294
BstEII GGTNACC 1 cut(s) 37
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 27
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 5 cut(s) 103, 131, 186, 283, 345
CseI GACGC 1 cut(s) 98
CviAII CATG 3 cut(s) 115, 295, 503
CviJI RGCY 5 cut(s) 76, 101, 121, 188, 454
CviKI_1 RGCY 5 cut(s) 76, 101, 121, 188, 454
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Ecl136II GAGCTC 2 cut(s) 76, 121
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 78, 123
Eco53kI GAGCTC 2 cut(s) 76, 121
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 76, 121
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 78, 123
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 3 cut(s) 118, 298, 506
FaiI YATR 9 cut(s) 116, 141, 218, 273, 296, 380, 504, 517, 523
FaqI GGGAC 2 cut(s) 217, 416
FatI CATG 3 cut(s) 114, 294, 502
FauI CCCGC 2 cut(s) 122, 274
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 2 cut(s) 78, 123
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 454
HgaI GACGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 118, 298, 506
HinfI GANTC 2 cut(s) 162, 268
HphI GGTGA 4 cut(s) 49, 58, 71, 203
Hpy188III TCNNGA 1 cut(s) 169
HpyCH4III ACNGT 4 cut(s) 70, 146, 233, 351
HpyCH4V TGCA 6 cut(s) 105, 184, 236, 278, 311, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 3 cut(s) 118, 298, 506
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 118, 479
LpnPI CCDG 9 cut(s) 82, 109, 174, 186, 192, 275, 291, 329, 347
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 142, 491
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 37, 148
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 4 cut(s) 32, 325, 399, 473
MhlI GDGCHC 2 cut(s) 78, 123
MluCI AATT 5 cut(s) 172, 225, 239, 329, 420
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 2 cut(s) 238, 392
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 98
NcoI CCATGG 1 cut(s) 294
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 118, 298, 506
NlaIV GGNNCC 2 cut(s) 325, 348
NmuCI GTSAC 2 cut(s) 37, 148
PasI CCCWGGG 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 2 cut(s) 78, 123
Psp6I CCWGG 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 325, 348
PstI CTGCAG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 2 cut(s) 78, 123
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 78, 123
SetI ASST 4 cut(s) 35, 78, 123, 190
SfaNI GCATC 2 cut(s) 142, 491
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 5 cut(s) 172, 225, 239, 329, 420
SsiI CCGC 2 cut(s) 129, 281
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 2 cut(s) 78, 123
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 70, 146, 233, 351
TasI AATT 5 cut(s) 172, 225, 239, 329, 420
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 2 cut(s) 37, 148
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 2 cut(s) 37, 148
TspDTI ATGAA 4 cut(s) 33, 103, 325, 519
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 366
Tth111I GACNNNGTC 1 cut(s) 146
XapI RAATTY 2 cut(s) 172, 239
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.