Rw6G033730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010191
Physical Location & Seq
Forward (+)
58335250 .. 58336940
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033730.1

Sequence Viewer

Length: 1182 bp
ATGCCAAGATCAGGCCCAAGACCCTATGAGTGTATCAGGAGAGCTTGGCACAGTGAGAGGCACCAGCCTGTGAGAGGTTCTCTCATTAAAGAGATTTTCAGTGTGGCGAATGAGATCCATAGCTCAGCTACTAGGAAGAACAAGGAATGGCAAGAGAAGCTCCCTATTGTTGTGTTGAAAGCAGAAGAGATTATGTACTCTAAAGCCAATTCTGAGGCCGAATATACGGACCTTAAAACGCTTTGGGACCGGGCAAATGATGCCATTAATACCATAATTCGCCGCGATGAAAGCATTGAAACTGGGGAAGAGTTTCTTCAGCCTTGTATTGAAGCTGCTCTCAATCTGGGGTGTGTAGCAAGAAGAGCTTCCAGGAGCCAACGGTATTCTAATCCAAGGTGTTATCTGAGCCCCATCACTTCTGATGTCCCTAGCGTGGTAGAGAAATCCAAGGTGTCCAATCCACAGTATACCCCTCATTGCTCGAACTTTGTTAAACCCATTACTATTAACTCAACCCATCTTGGCCCTGAATCCACTATGAAATCTACCTCTGCAGCCGAAAATGTTCCTCCTTGTGGTTTTGACCAATGCTCTCCTAGGGATATTCGGGCCACATCTAATATCTCTTCATATCCTCTATACTATGGGAACTGCCCTCAGTTTGAAGAACTCAAGCATGGTTTTGTTAGCCTTCCCAAACCAGTTCCGAACCCTATAAAGCCGGCCAAGATGAGTGTTATCCCAAACCTGTTCAGAAATGGAGATAAACCAAGCAACAGTACTCAGAATGGTCCAAGGGACTACCCTGATCAGATCCCAGATACAATTGGGTGTGATCTCTCTCTCCGGTTAGGCTCACTCTCTAGTCGATACCCGGGCAGTGAAAGCAATCCTGCACAGAAAGTCAAAGATGTTGGTGCTCAAGAAGGGAGCAAGTGTACTGATCAGCCTTCACAATTGGACAAAGAGCTGTCTTTCTTTCCTAAAGGTAATGACCGTGTCCTAATAGGCTCGAATTCAGGTCGGTGGAGTTTTGAGGGCGAGTTTATGAATGTGCAATCAACAATGAGAAAGCGAAGGGCAGATTTTAATCACCCAACTGAGGATACTAGATTTTGTAGGCAGCCGGAGCTTCCGATCAGCCGCTTGACTGGAAGTATGGGAAATGGAGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

44.0

Weight (kDa)

8.55

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 283, 1147
AclWI GGATC 2 cut(s) 109, 811
AcoI YGGCCR 1 cut(s) 726
AcsI RAATTY 1 cut(s) 1018
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 3 cut(s) 197, 784, 943
AfiI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 578, 1105
AgsI TTSAA 4 cut(s) 178, 299, 332, 668
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 973, 1135
AluI AGCT 8 cut(s) 44, 123, 128, 160, 335, 368, 973, 1135
Alw21I GWGCWC 1 cut(s) 925
AlwI GGATC 2 cut(s) 109, 811
Ama87I CYCGRG 1 cut(s) 877
AoxI GGCC 5 cut(s) 13, 216, 526, 612, 726
ApeKI GCWGC 3 cut(s) 335, 557, 1126
ApoI RAATTY 1 cut(s) 1018
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 3 cut(s) 312, 367, 567
AspA2I CCTAGG 1 cut(s) 599
AspS9I GGNCC 6 cut(s) 14, 229, 247, 527, 612, 794
AsuC2I CCSGG 3 cut(s) 251, 878, 879
AsuHPI GGTGA 1 cut(s) 1088
AvaI CYCGRG 1 cut(s) 877
AvaII GGWCC 3 cut(s) 229, 247, 794
AvrII CCTAGG 1 cut(s) 599
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 3 cut(s) 322, 569, 1138
BccI CCATC 2 cut(s) 422, 528
BciT130I CCWGG 1 cut(s) 373
BciVI GTATCC 1 cut(s) 1102
BclI TGATCA 2 cut(s) 811, 946
BcnI CCSGG 3 cut(s) 251, 878, 879
BfaI CTAG 5 cut(s) 132, 432, 600, 867, 1113
BfmI CTRYAG 1 cut(s) 555
BfuI GTATCC 1 cut(s) 1102
BisI GCNGC 5 cut(s) 283, 336, 558, 1127, 1147
BlnI CCTAGG 1 cut(s) 599
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 5 cut(s) 284, 337, 559, 1128, 1148
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 4 cut(s) 251, 373, 878, 879
Bme18I GGWCC 3 cut(s) 229, 247, 794
BmeT110I CYCGRG 1 cut(s) 877
BmgT120I GGNCC 6 cut(s) 14, 229, 247, 527, 612, 794
BmiI GGNNCC 3 cut(s) 62, 248, 377
BmrFI CCNGG 4 cut(s) 251, 373, 878, 879
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 312
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 66, 98
Bpu1102I GCTNAGC 1 cut(s) 124
BpuEI CTTGAG 2 cut(s) 659, 909
BpuMI CCSGG 3 cut(s) 251, 878, 879
BsaBI GATNNNNATC 1 cut(s) 1092
BsaJI CCNNGG 5 cut(s) 395, 450, 599, 797, 877
BsaWI WCCGGW 1 cut(s) 849
BsaXI ACNNNNNCTCC 2 cut(s) 925, 955
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 74, 436, 578, 1105
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 3 cut(s) 307, 704, 1159
Bse3DI GCAATG 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 1092
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 5 cut(s) 395, 450, 599, 797, 877
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 578, 1105
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 6 cut(s) 138, 204, 398, 674, 800, 1095
BseNI ACTGG 3 cut(s) 307, 704, 1159
BseXI GCAGC 3 cut(s) 322, 569, 1138
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 5 cut(s) 15, 218, 528, 614, 728
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 1 cut(s) 877
BsiSI CCGG 5 cut(s) 250, 725, 850, 878, 1130
BslFI GGGAC 3 cut(s) 260, 413, 815
BslI CCNNNNNNNGG 5 cut(s) 11, 74, 436, 578, 1105
BsmFI GGGAC 3 cut(s) 260, 413, 815
BsnI GGCC 5 cut(s) 15, 218, 528, 614, 728
BsoBI CYCGRG 1 cut(s) 877
Bsp1286I GDGCHC 2 cut(s) 413, 925
Bsp143I GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 283, 1147
BspANI GGCC 5 cut(s) 15, 218, 528, 614, 728
BspCNI CTCAG 6 cut(s) 137, 205, 399, 673, 799, 1096
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 62, 248, 377
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 2 cut(s) 109, 811
BspQI GCTCTTC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 3 cut(s) 307, 704, 1159
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 5 cut(s) 395, 450, 599, 797, 877
BssMI GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
BssNAI GTATAC 1 cut(s) 471
BssT1I CCWWGG 4 cut(s) 395, 450, 599, 797
Bst1107I GTATAC 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 5 cut(s) 53, 384, 468, 782, 1001
Bst6I CTCTTC 4 cut(s) 180, 303, 358, 634
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 6 cut(s) 124, 213, 407, 660, 786, 1104
BstENI CCTNNNNNAGG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 7 cut(s) 11, 117, 814, 819, 841, 949, 1143
BstMBI GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
BstMWI GCNNNNNNNGC 6 cut(s) 157, 260, 291, 365, 888, 1132
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 4 cut(s) 249, 371, 876, 877
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 322, 569, 1138
BstX2I RGATCY 2 cut(s) 114, 816
BstYI RGATCY 2 cut(s) 114, 816
BstZ17I GTATAC 1 cut(s) 471
BsuI GTATCC 1 cut(s) 1102
BsuRI GGCC 5 cut(s) 15, 218, 528, 614, 728
BtgZI GCGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 3 cut(s) 58, 106, 889
Cac8I GCNNGC 1 cut(s) 726
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 6 cut(s) 14, 229, 247, 527, 612, 794
Cfr9I CCCGGG 1 cut(s) 877
Csp6I GTAC 3 cut(s) 196, 783, 942
CviAII CATG 1 cut(s) 680
CviQI GTAC 3 cut(s) 196, 783, 942
DdeI CTNAG 6 cut(s) 124, 213, 407, 660, 786, 1104
DpnI GATC 7 cut(s) 10, 116, 813, 818, 840, 948, 1142
DpnII GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
EaeI YGGCCR 1 cut(s) 726
Eam1104I CTCTTC 4 cut(s) 180, 303, 358, 634
EarI CTCTTC 4 cut(s) 180, 303, 358, 634
Eco130I CCWWGG 4 cut(s) 395, 450, 599, 797
Eco24I GRGCYC 1 cut(s) 413
Eco47I GGWCC 3 cut(s) 229, 247, 794
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 877
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 1018
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 4 cut(s) 395, 450, 599, 797
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 4 cut(s) 395, 450, 599, 797
FaeI CATG 1 cut(s) 683
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 352, 384
FaqI GGGAC 3 cut(s) 260, 413, 815
FatI CATG 1 cut(s) 679
FbaI TGATCA 2 cut(s) 811, 946
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 5 cut(s) 283, 336, 558, 1127, 1147
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 5 cut(s) 283, 336, 558, 1127, 1147
FspBI CTAG 5 cut(s) 132, 432, 600, 867, 1113
GluI GCNGC 5 cut(s) 283, 336, 558, 1127, 1147
HaeIII GGCC 5 cut(s) 15, 218, 528, 614, 728
HapII CCGG 5 cut(s) 250, 725, 850, 878, 1130
Hin1II CATG 1 cut(s) 683
HinfI GANTC 1 cut(s) 533
HpaII CCGG 5 cut(s) 250, 725, 850, 878, 1130
HphI GGTGA 1 cut(s) 1088
Hpy166II GTNNAC 2 cut(s) 471, 942
Hpy188I TCNGA 8 cut(s) 214, 408, 424, 711, 758, 789, 816, 1140
Hpy188III TCNNGA 2 cut(s) 37, 926
Hpy8I GTNNAC 2 cut(s) 471, 942
HpyAV CCTTC 4 cut(s) 704, 923, 963, 1074
HpyCH4III ACNGT 5 cut(s) 53, 384, 468, 782, 1001
HpyCH4V TGCA 3 cut(s) 557, 899, 1060
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 260, 291, 365, 888, 1132
HpyF3I CTNAG 6 cut(s) 124, 213, 407, 660, 786, 1104
Hsp92II CATG 1 cut(s) 683
KroI GCCGGC 1 cut(s) 724
KroNI GCCGGC 1 cut(s) 726
Ksp22I TGATCA 2 cut(s) 811, 946
Kzo9I GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
LguI GCTCTTC 1 cut(s) 358
LmnI GCTCC 4 cut(s) 165, 375, 933, 1132
Lsp1109I GCAGC 3 cut(s) 322, 569, 1138
LweI GCATC 1 cut(s) 250
MaeI CTAG 5 cut(s) 132, 432, 600, 867, 1113
MalI GATC 7 cut(s) 10, 116, 813, 818, 840, 948, 1142
MboI GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
MboII GAAGA 7 cut(s) 148, 197, 308, 320, 375, 621, 680
MfeI CAATTG 2 cut(s) 828, 959
MflI RGATCY 2 cut(s) 114, 816
MhlI GDGCHC 2 cut(s) 413, 925
MluCI AATT 5 cut(s) 208, 276, 828, 959, 1018
MroNI GCCGGC 1 cut(s) 724
MroXI GAANNNNTTC 3 cut(s) 312, 367, 567
MseI TTAA 6 cut(s) 87, 234, 267, 495, 510, 1092
MspI CCGG 5 cut(s) 250, 725, 850, 878, 1130
MspR9I CCNGG 4 cut(s) 251, 373, 878, 879
MunI CAATTG 2 cut(s) 828, 959
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 6 cut(s) 157, 260, 291, 365, 888, 1132
NaeI GCCGGC 1 cut(s) 726
NciI CCSGG 3 cut(s) 251, 878, 879
NdeII GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
NgoMIV GCCGGC 1 cut(s) 724
NlaIII CATG 1 cut(s) 683
NlaIV GGNNCC 3 cut(s) 62, 248, 377
PciSI GCTCTTC 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 726
PdmI GAANNNNTTC 3 cut(s) 312, 367, 567
PfeI GAWTC 1 cut(s) 533
PflFI GACNNNGTC 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 5 cut(s) 284, 337, 559, 1128, 1148
PshBI ATTAAT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 62, 248, 377
PspPI GGNCC 6 cut(s) 14, 229, 247, 527, 612, 794
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 2 cut(s) 114, 816
PsyI GACNNNGTC 1 cut(s) 1001
RsaI GTAC 3 cut(s) 197, 784, 943
RsaNI GTAC 3 cut(s) 196, 783, 942
SapI GCTCTTC 1 cut(s) 358
SaqAI TTAA 6 cut(s) 87, 234, 267, 495, 510, 1092
SatI GCNGC 5 cut(s) 283, 336, 558, 1127, 1147
Sau3AI GATC 7 cut(s) 8, 114, 811, 816, 838, 946, 1140
Sau96I GGNCC 6 cut(s) 14, 229, 247, 527, 612, 794
ScaI AGTACT 1 cut(s) 784
ScrFI CCNGG 4 cut(s) 251, 373, 878, 879
SduI GDGCHC 2 cut(s) 413, 925
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 3 cut(s) 229, 247, 794
SmaI CCCGGG 1 cut(s) 879
SmlI CTYRAG 2 cut(s) 674, 924
SmoI CTYRAG 2 cut(s) 674, 924
Sse9I AATT 5 cut(s) 208, 276, 828, 959, 1018
SsiI CCGC 2 cut(s) 283, 1147
SspMI CTAG 5 cut(s) 132, 432, 600, 867, 1113
StyD4I CCNGG 4 cut(s) 249, 371, 876, 877
StyI CCWWGG 4 cut(s) 395, 450, 599, 797
TaaI ACNGT 5 cut(s) 53, 384, 468, 782, 1001
TaqI TCGA 3 cut(s) 485, 871, 1016
TasI AATT 5 cut(s) 208, 276, 828, 959, 1018
TatI WGTACW 3 cut(s) 195, 782, 941
TauI GCSGC 2 cut(s) 285, 1149
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 6 cut(s) 87, 234, 267, 495, 510, 1092
Tru9I TTAA 6 cut(s) 87, 234, 267, 495, 510, 1092
TscAI CASTG 3 cut(s) 58, 106, 889
TseI GCWGC 3 cut(s) 335, 557, 1126
TspDTI ATGAA 4 cut(s) 303, 557, 621, 1067
TspGWI ACGGA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 877
TspRI CASTG 3 cut(s) 58, 106, 889
Tth111I GACNNNGTC 1 cut(s) 1001
VpaK11BI GGWCC 3 cut(s) 229, 247, 794
VspI ATTAAT 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 1018
XmaI CCCGGG 1 cut(s) 877
XmaJI CCTAGG 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 470
XmnI GAANNNNTTC 3 cut(s) 312, 367, 567
XspI CTAG 5 cut(s) 132, 432, 600, 867, 1113
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.