Rorug06G0276600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010191
Physical Location & Seq
Reverse (-)
42359788 .. 42361693
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0276600.1

Sequence Viewer

Length: 1140 bp
ATGGAAGCCCTTCCTGAAGAGATCATACATGTAATCTTCCTGAGGTTACCCATCAAATCTTTACTCAAATGTACAGCAGTATGCAAGACATGGAACTCTATAATCTCAACCTCTAGTTTCATCGACACCCACCTCCACCTCAACTGCAGAGACGGCCAACTCCTCTTGCTACAGGCTTTTTCATCACCTGCAGATAGGAGGGAGCCTTTCTCGTTACATCGAGATAACCCTTCGTTCGATGAGTATACCAAGCTTAGAAATCCATTCTTAGCTTACGATAGGACACAAGCTGCTATCTCCAAAAAAAGATCAATAGCTTTAGGTAGTGAGCCTATCAATGTTGTCGGGACTTGTAACGGGCTGGTATGCCTTGTTGCTCGTGACTTTACTGTGTTAATTTGGAACCCTAGTATTCGAAAGTTCGTGGTTTTGGCCAGGCCTAGTGTCACCTTCATCAGGGATGATAATCCTAGAATAAGTTATGCCTTCGGTTATGATTCGTCCACCAATGACTATAAGGTTTTGAGAACTGTGAGTTATGTTCAGGGAGCTCGTTCATGTGAAGTCGAGATTTGGTCATTGGCCCGTGGCTCTTGGAAGAGTCTAACTGCTTCCATTGTTATTCCTGGTGACAACCCCTGTTATCCCAAAGCTTTTCTTCATGACACTCATGCTTTTGTCAATGGTGCTCTGCATTGGTTTCATCATTATAAGATGATAAACTACCACGATTCCATTGTTTCCTTTGATATTTCAAGTGAATCATTTGGCGAAATGACAATGCCTGCATTCTGGGGAAATAGAGAGATTTGCTTAATTTCAAGATACAGGGACTCCCTTGCTTTCTTTGAACAAGAATTTACTGATGTATTTCGTCTTGATGTATTTCGTCTTAGCATGTGGGTGATGGAAGAGTATGGTGTGGCAAACTCCTGCACTATTATTTTCACTATGGACTTCCATCATATAACATATCCATATCCACGGCCGCTTTGGTTCAGAAACAGTGGTGATGTAGTGCTCGAGTGCATTCAGGGAGTGCTGAAATCGGTGGATTCTAAGACCAAAAGCACTAGTGATTTTCGAATCAATGAGTTGGGTTGGGGCTACTCCATGCCAATTTGGGATGTTCTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

43.56

Weight (kDa)

6.63

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 38 6.9e-10 F-box-like
F-box PF00646 3 - 40 1.5e-09 F-box domain
FBA_3 PF08268 110 - 308 1.2e-21 F-box associated beta propeller domain
FBA_1 PF07734 111 - 310 1.7e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 245
AciI CCGC 1 cut(s) 989
AcoI YGGCCR 3 cut(s) 154, 432, 986
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 456
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 3 cut(s) 756, 822, 851
AhlI ACTAGT 1 cut(s) 1073
AjnI CCWGG 2 cut(s) 434, 625
AluBI AGCT 6 cut(s) 253, 272, 290, 317, 551, 653
AluI AGCT 6 cut(s) 253, 272, 290, 317, 551, 653
Alw21I GWGCWC 3 cut(s) 553, 691, 1023
Alw26I GTCTC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 5 cut(s) 154, 432, 437, 582, 986
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 857
Asp700I GAANNNNTTC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 583
AsuHPI GGTGA 5 cut(s) 177, 439, 641, 916, 1022
AsuII TTCGAA 2 cut(s) 415, 1084
AvaI CYCGRG 1 cut(s) 1022
AxyI CCTNAGG 1 cut(s) 41
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BauI CACGAG 1 cut(s) 378
Bbv12I GWGCWC 3 cut(s) 553, 691, 1023
BbvI GCAGC 1 cut(s) 277
BccI CCATC 3 cut(s) 59, 901, 969
BceAI ACGGC 2 cut(s) 169, 1001
BciT130I CCWGG 2 cut(s) 436, 627
BcoDI GTCTC 1 cut(s) 144
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 6 cut(s) 114, 408, 441, 471, 1074, 1138
BfmI CTRYAG 3 cut(s) 145, 170, 189
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 291, 989
BlsI GCNGC 2 cut(s) 292, 990
Bme1390I CCNGG 2 cut(s) 436, 627
BmeT110I CYCGRG 1 cut(s) 1022
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 2 cut(s) 204, 404
BmrFI CCNGG 2 cut(s) 436, 627
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu14I TTCGAA 2 cut(s) 415, 1084
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 586, 983
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse21I CCTNAGG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 2 cut(s) 436, 627
BseDI CCNNGG 2 cut(s) 586, 983
BseGI GGATG 2 cut(s) 466, 1132
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 986
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 919
Bsh1285I CGRYCG 1 cut(s) 989
BshFI GGCC 5 cut(s) 156, 434, 439, 584, 988
BsiEI CGRYCG 1 cut(s) 989
BsiHKAI GWGCWC 3 cut(s) 553, 691, 1023
BsiHKCI CYCGRG 1 cut(s) 1022
BslFI GGGAC 2 cut(s) 361, 845
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 361, 845
BsmI GAATGC 2 cut(s) 788, 1029
BsnI GGCC 5 cut(s) 156, 434, 439, 584, 988
BsoBI CYCGRG 1 cut(s) 1022
Bsp119I TTCGAA 2 cut(s) 415, 1084
Bsp1286I GDGCHC 3 cut(s) 553, 691, 1023
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 2 cut(s) 21, 308
BspACI CCGC 1 cut(s) 989
BspANI GGCC 5 cut(s) 156, 434, 439, 584, 988
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 2 cut(s) 204, 404
BspMAI CTGCAG 2 cut(s) 149, 193
BspMI ACCTGC 1 cut(s) 196
BspT104I TTCGAA 2 cut(s) 415, 1084
BsrGI TGTACA 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 586, 983
BssMI GATC 2 cut(s) 21, 308
BssNAI GTATAC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 436, 627
Bst4CI ACNGT 3 cut(s) 391, 532, 1007
Bst6I CTCTTC 3 cut(s) 12, 593, 906
BstAUI TGTACA 1 cut(s) 71
BstBI TTCGAA 2 cut(s) 415, 1084
BstC8I GCNNGC 1 cut(s) 786
BstDEI CTNAG 5 cut(s) 41, 254, 268, 893, 1059
BstDSI CCRYGG 2 cut(s) 586, 983
BstEII GGTNACC 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 454
BstF5I GGATG 2 cut(s) 466, 1132
BstKTI GATC 2 cut(s) 24, 311
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 21, 308
BstMCI CGRYCG 1 cut(s) 989
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 436, 627
BstNSI RCATGY 2 cut(s) 32, 901
BstPI GGTNACC 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 434, 625
BstSFI CTRYAG 3 cut(s) 145, 170, 189
BstV1I GCAGC 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 246
BstZI CGGCCG 1 cut(s) 986
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 5 cut(s) 156, 434, 439, 584, 988
BtgI CCRYGG 2 cut(s) 586, 983
BtsCI GGATG 2 cut(s) 466, 1132
BtsIMutI CAGTG 1 cut(s) 1012
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 786
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 1 cut(s) 583
Csp6I GTAC 1 cut(s) 72
CviAII CATG 7 cut(s) 29, 90, 558, 662, 671, 898, 1114
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 5 cut(s) 41, 254, 268, 893, 1059
DpnI GATC 2 cut(s) 23, 310
DpnII GATC 2 cut(s) 21, 308
EaeI YGGCCR 3 cut(s) 154, 432, 986
EagI CGGCCG 1 cut(s) 986
Eam1104I CTCTTC 3 cut(s) 12, 593, 906
EarI CTCTTC 3 cut(s) 12, 593, 906
Ecl136II GAGCTC 1 cut(s) 551
EclXI CGGCCG 1 cut(s) 986
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 553
Eco52I CGGCCG 1 cut(s) 986
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 1022
Eco91I GGTNACC 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 551
EcoNI CCTNNNNNAGG 1 cut(s) 454
EcoO65I GGTNACC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 434, 625
EcoT38I GRGCYC 1 cut(s) 553
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 7 cut(s) 32, 93, 561, 665, 674, 901, 1117
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FaqI GGGAC 2 cut(s) 361, 845
FatI CATG 7 cut(s) 28, 89, 557, 661, 670, 897, 1113
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 291, 989
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 2 cut(s) 291, 989
FspBI CTAG 6 cut(s) 114, 408, 441, 471, 1074, 1138
GluI GCNGC 2 cut(s) 291, 989
HaeIII GGCC 5 cut(s) 156, 434, 439, 584, 988
Hin1II CATG 7 cut(s) 32, 93, 561, 665, 674, 901, 1117
HindIII AAGCTT 2 cut(s) 251, 651
HinfI GANTC 7 cut(s) 497, 601, 731, 761, 833, 1055, 1086
HphI GGTGA 5 cut(s) 177, 439, 641, 916, 1022
Hpy166II GTNNAC 2 cut(s) 246, 504
Hpy188I TCNGA 1 cut(s) 1001
Hpy188III TCNNGA 9 cut(s) 14, 40, 221, 346, 380, 568, 662, 822, 878
Hpy8I GTNNAC 2 cut(s) 246, 504
HpyAV CCTTC 4 cut(s) 20, 240, 460, 496
HpyCH4III ACNGT 3 cut(s) 391, 532, 1007
HpyCH4V TGCA 7 cut(s) 84, 147, 191, 694, 788, 936, 1029
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 5 cut(s) 41, 254, 268, 893, 1059
Hsp92II CATG 7 cut(s) 32, 93, 561, 665, 674, 901, 1117
Kzo9I GATC 2 cut(s) 21, 308
LmnI GCTCC 2 cut(s) 202, 548
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 6 cut(s) 114, 408, 441, 471, 1074, 1138
MaeIII GTNAC 6 cut(s) 45, 213, 353, 380, 445, 629
MalI GATC 2 cut(s) 23, 310
MboI GATC 2 cut(s) 21, 308
MboII GAAGA 5 cut(s) 28, 29, 610, 650, 923
MhlI GDGCHC 3 cut(s) 553, 691, 1023
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 4 cut(s) 396, 816, 857, 1119
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 2 cut(s) 610, 827
MnlI CCTC 6 cut(s) 36, 121, 143, 149, 173, 192
Mox20I TGGCCA 1 cut(s) 434
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 434
MseI TTAA 3 cut(s) 395, 815, 1134
MslI CAYNNNNRTG 1 cut(s) 902
Msp20I TGGCCA 1 cut(s) 434
MspR9I CCNGG 2 cut(s) 436, 627
Mva1269I GAATGC 2 cut(s) 788, 1029
MvaI CCWGG 2 cut(s) 436, 627
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 2 cut(s) 21, 308
NlaIII CATG 7 cut(s) 32, 93, 561, 665, 674, 901, 1117
NlaIV GGNNCC 2 cut(s) 204, 404
NmuCI GTSAC 3 cut(s) 380, 445, 629
NspI RCATGY 2 cut(s) 32, 901
NspV TTCGAA 2 cut(s) 415, 1084
PaeR7I CTCGAG 1 cut(s) 1022
PagI TCATGA 1 cut(s) 661
PaqCI CACCTGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 439
PciI ACATGT 1 cut(s) 28
PctI GAATGC 2 cut(s) 788, 1029
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 5 cut(s) 497, 731, 761, 1055, 1086
PkrI GCNGC 2 cut(s) 292, 990
PleI GAGTC 2 cut(s) 609, 827
PpsI GAGTC 2 cut(s) 609, 827
PscI ACATGT 1 cut(s) 28
PsiI TTATAA 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 434, 625
PspEI GGTNACC 1 cut(s) 45
PspGI CCWGG 2 cut(s) 434, 625
PspN4I GGNNCC 2 cut(s) 204, 404
PspPI GGNCC 1 cut(s) 583
PspXI VCTCGAGB 1 cut(s) 1022
PstI CTGCAG 2 cut(s) 149, 193
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 902
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 395, 815, 1134
SatI GCNGC 2 cut(s) 291, 989
Sau3AI GATC 2 cut(s) 21, 308
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 2 cut(s) 610, 827
ScrFI CCNGG 2 cut(s) 436, 627
SduI GDGCHC 3 cut(s) 553, 691, 1023
SfcI CTRYAG 3 cut(s) 145, 170, 189
Sfr274I CTCGAG 1 cut(s) 1022
SfuI TTCGAA 2 cut(s) 415, 1084
SlaI CTCGAG 1 cut(s) 1022
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
SpeI ACTAGT 1 cut(s) 1073
Sse9I AATT 4 cut(s) 396, 816, 857, 1119
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 1 cut(s) 989
SspMI CTAG 6 cut(s) 114, 408, 441, 471, 1074, 1138
SstI GAGCTC 1 cut(s) 553
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 434, 625
TaaI ACNGT 3 cut(s) 391, 532, 1007
TaqI TCGA 7 cut(s) 123, 220, 237, 415, 567, 1023, 1084
TasI AATT 4 cut(s) 396, 816, 857, 1119
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 991
TfiI GAWTC 5 cut(s) 497, 731, 761, 1055, 1086
Tru1I TTAA 3 cut(s) 395, 815, 1134
Tru9I TTAA 3 cut(s) 395, 815, 1134
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 3 cut(s) 380, 445, 629
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 3 cut(s) 380, 445, 629
TspDTI ATGAA 6 cut(s) 109, 171, 442, 546, 650, 692
TspRI CASTG 1 cut(s) 1012
XagI CCTNNNNNAGG 1 cut(s) 454
XapI RAATTY 1 cut(s) 857
XceI RCATGY 2 cut(s) 32, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 990
XhoI CTCGAG 1 cut(s) 1022
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 6 cut(s) 114, 408, 441, 471, 1074, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.