Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Reverse (-)

22923478 .. 22924821

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29591.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCAACCGCTCCTCTGAAACCAGCGCCAGGATCAATGTCAGCAGTTCGGATTCGTGCTGCCATTAGGGCCGCCCTCTCCGAGGCTCAATCTGACTCCGATGAAGTTCAGCAGAAAGCTCTTCAGACCTTAGCTTCTATCACCAAGGTGAGTCCCCAGAACCGAAACCTACTTGCACAAACCGAAGGAGCAGTCCCTTCCTTACTAGCCCTTTCAGAATCTTCATCCAGCATCACTCAGAATCTGGCATTGTCCATCCTCTTCAACCTTTCCCTGAACCTTGATCTGAAGCTATCACTTGCAGATTTAGAAACCATCTACCACCTTAATACCATAATTTCCGACCCAACAGAATCTGGCAAGCTAGCTTCCTCTCTGGTCTGCAGTCTAGCTATGCTTGACAAGAACAAGGCCAAGTTTGGTGTAGCAGGCACAATCCAATTGCTTGTCAAGGCCATTTCAGGTCCCCGTGGTCCTGCTGCTCATCACATCCTTAGCTCCCTCGCAGAGCTTGTTCGGTTCCATGGGAACTGCACTGTGGCAGTAAGAGAAGGTGCTGTTCCTGCACTTCTCCAAGTGGTGGAGAGCCCTGATGGTGAGGACCTAGCCGGAACTTCTCTTCTGGTCCTAGGCCTTCTTGCTAGATTTGATGAAGGGCTGAGTGCTTTAAGCAAAACTGATCAGATTGTGAGTTCAATGGTACAAGTGTTAAAGGGCAGGTGTATGTTGAGCAAGGAAGGTGCAGCTGAACTTCTGCTTCTCCTCTTTGACGAAAGCGAGGGGTGTGTGAGAGATGCTCTGAGGCTTCAAGACTTCTCGAGTTTGGTAGCTGATATTTCAGTCAGAGGATCAGCTAGAGCTAGAGAGAAGGCTGCTTTGCTGATGAAGAAGATGATGGATGCTGACATGGATTCTTATGCGGATGGAAACCCCATGTTTTCCCAGTGGTTAGTGACCTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

322

Amino Acids

33.98

Weight (kDa)

5.48

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	22 - 300	2.8e-11	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	25 - 168	2.9e-08	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	708
Acc36I	ACCTGC	1 cut(s)	708
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	3 cut(s)	9, 72, 920
AclWI	GGATC	2 cut(s)	40, 856
AcuI	CTGAAG	2 cut(s)	107, 308
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	3 cut(s)	29, 82, 580
AgsI	TTSAA	3 cut(s)	265, 696, 809
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	146
AlwI	GGATC	2 cut(s)	40, 856
AlwNI	CAGNNNCTG	2 cut(s)	244, 356
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	4 cut(s)	69, 411, 453, 631
ApeKI	GCWGC	4 cut(s)	59, 479, 743, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspA2I	CCTAGG	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	5 cut(s)	69, 464, 473, 601, 625
AsuHPI	GGTGA	3 cut(s)	133, 160, 608
AsuNHI	GCTAGC	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	4 cut(s)	464, 473, 601, 625
AvrII	CCTAGG	1 cut(s)	628
BaeI	ACNNNNGTAYC	2 cut(s)	692, 725
BanII	GRGCYC	1 cut(s)	590
BbvI	GCAGC	4 cut(s)	46, 466, 755, 859
BccI	CCATC	5 cut(s)	263, 323, 587, 889, 917
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	679
BfaI	CTAG	8 cut(s)	206, 365, 389, 605, 629, 642, 855, 861
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	708
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	5 cut(s)	60, 72, 480, 744, 873
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	5 cut(s)	61, 73, 481, 745, 874
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	4 cut(s)	464, 473, 601, 625
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	5 cut(s)	69, 464, 473, 601, 625
BmiI	GGNNCC	2 cut(s)	466, 521
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	240, 784, 889
BmtI	GCTAGC	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	937
BoxI	GACNNNNGTC	1 cut(s)	959
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu10I	CCTNAGC	2 cut(s)	130, 494
BsaJI	CCNNGG	5 cut(s)	81, 144, 469, 523, 628
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 82, 580
Bse1I	ACTGG	1 cut(s)	943
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	5 cut(s)	81, 144, 469, 523, 628
BseGI	GGATG	5 cut(s)	224, 255, 489, 904, 928
BseLI	CCNNNNNNNGG	3 cut(s)	29, 82, 580
BseMII	CTCAG	3 cut(s)	251, 650, 791
BseNI	ACTGG	1 cut(s)	943
BseRI	GAGGAG	1 cut(s)	752
BseXI	GCAGC	4 cut(s)	46, 466, 755, 859
BsgI	GTGCAG	3 cut(s)	517, 549, 762
BshFI	GGCC	4 cut(s)	71, 413, 455, 633
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	3 cut(s)	138, 179, 450
BslI	CCNNNNNNNGG	3 cut(s)	29, 82, 580
BsmFI	GGGAC	3 cut(s)	138, 179, 450
BsnI	GGCC	4 cut(s)	71, 413, 455, 633
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	32, 283, 679, 848
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	3 cut(s)	9, 72, 920
BspANI	GGCC	4 cut(s)	71, 413, 455, 633
BspCNI	CTCAG	3 cut(s)	250, 651, 792
BspLI	GGNNCC	2 cut(s)	466, 521
BspMAI	CTGCAG	1 cut(s)	386
BspMI	ACCTGC	1 cut(s)	708
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	40, 856
BspQI	GCTCTTC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	943
BssECI	CCNNGG	5 cut(s)	81, 144, 469, 523, 628
BssMI	GATC	4 cut(s)	32, 283, 679, 848
BssT1I	CCWWGG	3 cut(s)	144, 523, 628
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	3 cut(s)	126, 266, 624
BstC8I	GCNNGC	3 cut(s)	362, 366, 430
BstDEI	CTNAG	6 cut(s)	130, 237, 494, 659, 800, 958
BstDSI	CCRYGG	2 cut(s)	469, 523
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	5 cut(s)	224, 255, 489, 904, 928
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	35, 286, 682, 851
BstMBI	GATC	4 cut(s)	32, 283, 679, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 563
BstNI	CCWGG	1 cut(s)	30
BstPAI	GACNNNNGTC	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	4 cut(s)	46, 466, 755, 859
BsuRI	GGCC	4 cut(s)	71, 413, 455, 633
BtgI	CCRYGG	2 cut(s)	469, 523
BtsCI	GGATG	5 cut(s)	224, 255, 489, 904, 928
BtsIMutI	CAGTG	2 cut(s)	534, 950
BveI	ACCTGC	1 cut(s)	708
Cac8I	GCNNGC	3 cut(s)	362, 366, 430
CaiI	CAGNNNCTG	2 cut(s)	244, 356
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	5 cut(s)	69, 464, 473, 601, 625
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	3 cut(s)	524, 907, 934
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	6 cut(s)	130, 237, 494, 659, 800, 958
DpnI	GATC	4 cut(s)	34, 285, 681, 850
DpnII	GATC	4 cut(s)	32, 283, 679, 848
Eam1104I	CTCTTC	3 cut(s)	126, 266, 624
EarI	CTCTTC	3 cut(s)	126, 266, 624
Eco130I	CCWWGG	3 cut(s)	144, 523, 628
Eco147I	AGGCCT	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	4 cut(s)	464, 473, 601, 625
Eco57I	CTGAAG	2 cut(s)	107, 308
Eco88I	CYCGRG	1 cut(s)	817
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoO109I	RGGNCCY	2 cut(s)	464, 601
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	144, 523, 628
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	3 cut(s)	144, 523, 628
FaeI	CATG	3 cut(s)	527, 910, 937
FaiI	YATR	7 cut(s)	335, 395, 525, 725, 908, 918, 935
FaqI	GGGAC	3 cut(s)	138, 179, 450
FatI	CATG	3 cut(s)	523, 906, 933
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	5 cut(s)	60, 72, 480, 744, 873
FokI	GGATG	5 cut(s)	211, 242, 476, 911, 935
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	5 cut(s)	60, 72, 480, 744, 873
FspBI	CTAG	8 cut(s)	206, 365, 389, 605, 629, 642, 855, 861
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	5 cut(s)	60, 72, 480, 744, 873
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	71, 413, 455, 633
HapII	CCGG	1 cut(s)	609
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	527, 910, 937
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	7 cut(s)	52, 95, 151, 218, 241, 353, 911
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	3 cut(s)	133, 160, 608
Hpy188III	TCNNGA	2 cut(s)	809, 817
HpyAV	CCTTC	7 cut(s)	179, 207, 545, 644, 647, 731, 862
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4V	TGCA	6 cut(s)	176, 302, 384, 534, 566, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 563
HpyF3I	CTNAG	6 cut(s)	130, 237, 494, 659, 800, 958
Hsp92II	CATG	3 cut(s)	527, 910, 937
HspAI	GCGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	4 cut(s)	32, 283, 679, 848
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	3 cut(s)	16, 188, 503
Lsp1109I	GCAGC	4 cut(s)	46, 466, 755, 859
LweI	GCATC	3 cut(s)	240, 784, 889
MaeI	CTAG	8 cut(s)	206, 365, 389, 605, 629, 642, 855, 861
MaeIII	GTNAC	1 cut(s)	952
MalI	GATC	4 cut(s)	34, 285, 681, 850
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	4 cut(s)	32, 283, 679, 848
MboII	GAAGA	6 cut(s)	113, 213, 253, 611, 898, 901
MfeI	CAATTG	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	2 cut(s)	336, 440
MlyI	GAGTC	2 cut(s)	89, 160
MmeI	TCCRAC	1 cut(s)	366
MseI	TTAA	3 cut(s)	327, 668, 710
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	68, 563
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	32, 283, 679, 848
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	3 cut(s)	527, 910, 937
NlaIV	GGNNCC	2 cut(s)	466, 521
NmuCI	GTSAC	1 cut(s)	952
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	817
PaqCI	CACCTGC	1 cut(s)	708
PceI	AGGCCT	1 cut(s)	633
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	5 cut(s)	52, 218, 241, 353, 911
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	5 cut(s)	61, 73, 481, 745, 874
PleI	GAGTC	2 cut(s)	89, 159
PpsI	GAGTC	2 cut(s)	89, 159
PpuMI	RGGWCCY	2 cut(s)	464, 601
PshAI	GACNNNNGTC	1 cut(s)	959
Psp5II	RGGWCCY	2 cut(s)	464, 601
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	466, 521
PspPI	GGNCC	5 cut(s)	69, 464, 473, 601, 625
PspPPI	RGGWCCY	2 cut(s)	464, 601
PstI	CTGCAG	1 cut(s)	386
PstNI	CAGNNNCTG	2 cut(s)	244, 356
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	327, 668, 710
SatI	GCNGC	5 cut(s)	60, 72, 480, 744, 873
Sau3AI	GATC	4 cut(s)	32, 283, 679, 848
Sau96I	GGNCC	5 cut(s)	69, 464, 473, 601, 625
SchI	GAGTC	2 cut(s)	89, 160
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	3 cut(s)	240, 784, 889
SfcI	CTRYAG	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	817
SinI	GGWCC	4 cut(s)	464, 473, 601, 625
SlaI	CTCGAG	1 cut(s)	817
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	817
SmoI	CTYRAG	1 cut(s)	817
Sse9I	AATT	2 cut(s)	336, 440
SseBI	AGGCCT	1 cut(s)	633
SsiI	CCGC	3 cut(s)	9, 72, 920
SspMI	CTAG	8 cut(s)	206, 365, 389, 605, 629, 642, 855, 861
StuI	AGGCCT	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	3 cut(s)	144, 523, 628
TaaI	ACNGT	1 cut(s)	538
TaqI	TCGA	1 cut(s)	818
TasI	AATT	2 cut(s)	336, 440
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	5 cut(s)	52, 218, 241, 353, 911
Tru1I	TTAA	3 cut(s)	327, 668, 710
Tru9I	TTAA	3 cut(s)	327, 668, 710
TscAI	CASTG	2 cut(s)	541, 950
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	4 cut(s)	59, 479, 743, 872
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	4 cut(s)	117, 213, 666, 899
TspRI	CASTG	2 cut(s)	541, 950
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	4 cut(s)	464, 473, 601, 625
XagI	CCTNNNNNAGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	817
XmaJI	CCTAGG	1 cut(s)	628
XspI	CTAG	8 cut(s)	206, 365, 389, 605, 629, 642, 855, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.