Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Forward (+)

7319767 .. 7320723

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCCTGCCCCTGCTCTGAAACCAGTACTCCCAACAATGTCAGCTCCTCGGGTTCGCGAGGCAATCAGGCAGTATCTCTCGGAGGCTCAGTCGGATTCTCACGAAGTGCAGCAGAAAGCTCTCCAGACTTTAGTTTCCATCACCAAGGTGAGTCCCCAAAACAGGAGCTTGGTTTCACAGACAGAAGGAGCCATCCCCGCCTTACTTGCCCTCTCGAAATCTTCCTCCGACAGCATTCAGGTTCTCTCGCTGTCTGTCCTCTTCAATCTGTCCCTGAATCCGGATCTGAAGCAATCTCTAGCAGATATTAAAACCCTTAAACATCTGAATTCGATAATTGCCTCTTTGACCTCCGCGGAGTCCGGCAAGGTAGCTTCCTCTCTGGTTTGCAGTTTGGCAATGCTTGACAAGAACAAGGCCAAGTTTGGTGTAGCAGGCACCATCCAGTTACTAGTCAAGGTCATTTCCGGCCCTCGCAGCCCTGCCATCCATCACCTCCTCAGCTCTCTAGCTGAGCTTGTTCGGTTCCACGGGAACTGCACTTTGGCAGTGAGAGAAGGAGCTGTTCAAGCGCTCATCCAAGTGGTGGAGTGCAGTGACAGCGAGGATCTAGCCGGAACTTCTCTCCAGGTTCTTGGCCTTCTTGCGAGGTTTGATGAAGGACTGAATGCTTTGAGCAAAACCGACCAGATTGTGAGCTCAATGGTAGAAGTGTTAAAAGGGAGGTGCATGCTGAGTAAGGAAGGTGCGGCTGAAATCCTCCTGCTCCTGTTTGATGAAAGTGAGGGCTGCGTGAGAGACGCTTTGAGGCTGCCGGACTTCTCAACTTTGGTAGCTGATATTTCGGTCAGAGGATCACCGAGAGCCCGAGAGAAGGCGGCGTTGCTGATGAAGAAGATCATGGAGGATGACTTGGATTCTTATGTTGATGGAAACCCCATGTTTTCTCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

319

Amino Acids

34.12

Weight (kDa)

6.24

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	18 - 300	6.9e-14	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	21 - 167	1e-08	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	2 cut(s)	57, 356
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	5 cut(s)	198, 354, 356, 749, 878
AclWI	GGATC	3 cut(s)	291, 615, 862
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	308
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	27
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	4 cut(s)	162, 280, 586, 874
AgsI	TTSAA	2 cut(s)	265, 569
AhlI	ACTAGT	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AleI	CACNNNNGTG	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	701
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	3 cut(s)	291, 615, 862
Ama87I	CYCGRG	2 cut(s)	48, 867
Aor13HI	TCCGGA	1 cut(s)	280
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	3 cut(s)	417, 469, 637
ApeKI	GCWGC	4 cut(s)	109, 477, 789, 811
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	133, 160, 485, 849
AvaI	CYCGRG	2 cut(s)	48, 867
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	701, 868
Bbv12I	GWGCWC	1 cut(s)	701
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	121, 489, 776, 798
BccI	CCATC	6 cut(s)	146, 200, 449, 494, 498, 923
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	792
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	4 cut(s)	299, 452, 509, 611
BfoI	RGCGCY	1 cut(s)	575
BisI	GCNGC	6 cut(s)	110, 478, 750, 790, 812, 879
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	6 cut(s)	111, 479, 751, 791, 813, 880
BmcAI	AGTACT	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	629
BmeT110I	CYCGRG	2 cut(s)	48, 867
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	190, 439, 527
BmrFI	CCNGG	1 cut(s)	629
BpmI	CTGGAG	2 cut(s)	107, 611
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	513
BsaJI	CCNNGG	4 cut(s)	47, 144, 354, 529
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 280, 586, 874
Bse1I	ACTGG	2 cut(s)	23, 445
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	4 cut(s)	47, 144, 354, 529
BseGI	GGATG	5 cut(s)	192, 441, 486, 576, 913
BseLI	CCNNNNNNNGG	4 cut(s)	162, 280, 586, 874
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	4 cut(s)	101, 504, 514, 725
BseNI	ACTGG	2 cut(s)	23, 445
BseRI	GAGGAG	2 cut(s)	36, 488
BseXI	GCAGC	4 cut(s)	121, 489, 776, 798
BsgI	GTGCAG	3 cut(s)	128, 523, 613
Bsh1236I	CGCG	2 cut(s)	57, 356
BshFI	GGCC	3 cut(s)	419, 471, 639
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	701
BsiHKCI	CYCGRG	2 cut(s)	48, 867
BsiSI	CCGG	5 cut(s)	281, 363, 468, 615, 815
BslFI	GGGAC	2 cut(s)	138, 256
BslI	CCNNNNNNNGG	4 cut(s)	162, 280, 586, 874
BsmAI	GTCTC	1 cut(s)	792
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	2 cut(s)	138, 256
BsmI	GAATGC	2 cut(s)	234, 673
BsnI	GGCC	3 cut(s)	419, 471, 639
BsoBI	CYCGRG	2 cut(s)	48, 867
Bsp1286I	GDGCHC	2 cut(s)	701, 868
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	283, 607, 854, 897
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp68I	TCGCGA	1 cut(s)	57
BspACI	CCGC	5 cut(s)	198, 354, 356, 749, 878
BspANI	GGCC	3 cut(s)	419, 471, 639
BspCNI	CTCAG	4 cut(s)	100, 505, 513, 726
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	2 cut(s)	57, 356
BspLI	GGNNCC	3 cut(s)	190, 439, 527
BspPI	GGATC	3 cut(s)	291, 615, 862
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	23, 445
BssECI	CCNNGG	4 cut(s)	47, 144, 354, 529
BssMI	GATC	4 cut(s)	283, 607, 854, 897
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	6, 436, 731
BstDEI	CTNAG	5 cut(s)	87, 500, 513, 734, 948
BstDSI	CCRYGG	2 cut(s)	354, 529
BstF5I	GGATG	5 cut(s)	192, 441, 486, 576, 913
BstFNI	CGCG	2 cut(s)	57, 356
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	4 cut(s)	286, 610, 857, 900
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	4 cut(s)	283, 607, 854, 897
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 477, 569, 600
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	627
BstUI	CGCG	2 cut(s)	57, 356
BstV1I	GCAGC	4 cut(s)	121, 489, 776, 798
BstX2I	RGATCY	2 cut(s)	283, 607
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	2 cut(s)	283, 607
BsuRI	GGCC	3 cut(s)	419, 471, 639
BtgI	CCRYGG	2 cut(s)	354, 529
BtsCI	GGATG	5 cut(s)	192, 441, 486, 576, 913
BtsI	GCAGTG	2 cut(s)	555, 601
BtsIMutI	CAGTG	3 cut(s)	555, 601, 956
BtuMI	TCGCGA	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	6, 436, 731
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	470
Cfr42I	CCGCGG	1 cut(s)	357
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	3 cut(s)	730, 901, 940
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	5 cut(s)	87, 500, 513, 734, 948
DpnI	GATC	4 cut(s)	285, 609, 856, 899
DpnII	GATC	4 cut(s)	283, 607, 854, 897
DraIII	CACNNNGTG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	699
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	701, 868
Eco47III	AGCGCT	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	2 cut(s)	48, 867
EcoICRI	GAGCTC	1 cut(s)	699
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	701, 868
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	3 cut(s)	733, 904, 943
FaiI	YATR	4 cut(s)	731, 902, 924, 941
FaqI	GGGAC	2 cut(s)	138, 256
FatI	CATG	3 cut(s)	729, 900, 939
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	6 cut(s)	110, 478, 750, 790, 812, 879
FokI	GGATG	5 cut(s)	179, 428, 473, 563, 920
FriOI	GRGCYC	2 cut(s)	701, 868
Fsp4HI	GCNGC	6 cut(s)	110, 478, 750, 790, 812, 879
FspBI	CTAG	4 cut(s)	299, 452, 509, 611
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	6 cut(s)	110, 478, 750, 790, 812, 879
GsuI	CTGGAG	2 cut(s)	107, 611
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	3 cut(s)	419, 471, 639
HapII	CCGG	5 cut(s)	281, 363, 468, 615, 815
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	3 cut(s)	733, 904, 943
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	5 cut(s)	95, 151, 277, 359, 917
HpaII	CCGG	5 cut(s)	281, 363, 468, 615, 815
HphI	GGTGA	4 cut(s)	133, 160, 485, 849
Hpy188I	TCNGA	7 cut(s)	18, 82, 94, 229, 288, 327, 851
Hpy188III	TCNNGA	5 cut(s)	56, 101, 124, 214, 281
HpyAV	CCTTC	6 cut(s)	179, 551, 650, 653, 737, 868
HpyCH4V	TGCA	5 cut(s)	109, 390, 540, 594, 729
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 477, 569, 600
HpyF3I	CTNAG	5 cut(s)	87, 500, 513, 734, 948
Hsp92II	CATG	3 cut(s)	733, 904, 943
HspAI	GCGC	1 cut(s)	572
Kpn2I	TCCGGA	1 cut(s)	280
KspI	CCGCGG	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	283, 607, 854, 897
LmnI	GCTCC	5 cut(s)	49, 165, 188, 560, 771
Lsp1109I	GCAGC	4 cut(s)	121, 489, 776, 798
MaeI	CTAG	4 cut(s)	299, 452, 509, 611
MaeIII	GTNAC	2 cut(s)	447, 596
MalI	GATC	4 cut(s)	285, 609, 856, 899
MboI	GATC	4 cut(s)	283, 607, 854, 897
MboII	GAAGA	4 cut(s)	213, 253, 904, 907
MflI	RGATCY	2 cut(s)	283, 607
MhlI	GDGCHC	2 cut(s)	701, 868
MluCI	AATT	2 cut(s)	328, 336
MlyI	GAGTC	2 cut(s)	160, 368
MmeI	TCCRAC	2 cut(s)	72, 252
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	3 cut(s)	309, 318, 716
MslI	CAYNNNNRTG	2 cut(s)	146, 581
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	5 cut(s)	281, 363, 468, 615, 815
MspR9I	CCNGG	1 cut(s)	629
Mva1269I	GAATGC	2 cut(s)	234, 673
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	2 cut(s)	57, 356
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 477, 569, 600
NdeII	GATC	4 cut(s)	283, 607, 854, 897
NlaIII	CATG	3 cut(s)	733, 904, 943
NlaIV	GGNNCC	3 cut(s)	190, 439, 527
NmuCI	GTSAC	1 cut(s)	596
NruI	TCGCGA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	733
OliI	CACNNNNGTG	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	733
PctI	GAATGC	2 cut(s)	234, 673
PfeI	GAWTC	3 cut(s)	95, 277, 917
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	6 cut(s)	111, 479, 751, 791, 813, 880
PleI	GAGTC	2 cut(s)	159, 367
PpsI	GAGTC	2 cut(s)	159, 367
Psp124BI	GAGCTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	3 cut(s)	190, 439, 527
PspPI	GGNCC	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	283, 607
RruI	TCGCGA	1 cut(s)	57
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	2 cut(s)	146, 581
SacI	GAGCTC	1 cut(s)	701
SacII	CCGCGG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	309, 318, 716
SatI	GCNGC	6 cut(s)	110, 478, 750, 790, 812, 879
Sau3AI	GATC	4 cut(s)	283, 607, 854, 897
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	27
SchI	GAGTC	2 cut(s)	160, 368
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	701, 868
Sfr303I	CCGCGG	1 cut(s)	357
SgrBI	CCGCGG	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	146, 581
SpeI	ACTAGT	1 cut(s)	451
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	2 cut(s)	328, 336
SsiI	CCGC	5 cut(s)	198, 354, 356, 749, 878
SspMI	CTAG	4 cut(s)	299, 452, 509, 611
SstI	GAGCTC	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	2 cut(s)	215, 332
TaqII	GACCGA	1 cut(s)	835
TasI	AATT	2 cut(s)	328, 336
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	752, 881
TfiI	GAWTC	3 cut(s)	95, 277, 917
Tru1I	TTAA	3 cut(s)	309, 318, 716
Tru9I	TTAA	3 cut(s)	309, 318, 716
TscAI	CASTG	3 cut(s)	555, 601, 956
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	109, 477, 789, 811
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	672, 792, 905
TspRI	CASTG	3 cut(s)	555, 601, 956
Van91I	CCANNNNNTGG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	733
XspI	CTAG	4 cut(s)	299, 452, 509, 611
ZrmI	AGTACT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.