Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Forward (+)

10542016 .. 10545605

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAACCAAACACTGCCTAAGCCAAACCTTACGGCAAATCCTCGTTTGTTTAGTTTGTCAGTTACACGCGCGTACAAAATTTGGCAATTGCAACGTCCCGCACTCCGCAGAGGAGAAATAGTCAAAAACCACCAACAAATACGACGCACCGCGAGAATGTGGAGGCGCGTGGTATCTACTTCCCCGGCTCAGCTCCAAAACCTCGCCGCCTCAGCCTCACGCAGATCCTCGTCTCTCAATCACACCCGTAGGTTCGTAATCTCCTCAGCGTCTTCCCCTTCGTCCACGCCGTTGCCCAAATCCGCTCCTCCCGCCGCTCCCCACATTGCCTCCGCTTCCACCTCCCGCTTAATTGTGTGTGATCATTTTCATGGTAATTGTATGCAAAGCTTCAACCCTAAAGACTGCTTAAGCATGCCTGCCCCTGCCCTGAAACCAGTACTCCCAACGATGTCAGCTCCTCGGATACGCGAGGCAATTGGGCAGTGCTTCTCGGGGACTCAGTCTGACTCTCCTGAAGTGCAGCTGAAGGCTCTCCACACTTTAGTTTCCATCACCAAGATTCTCTCGTTGTCTGTCCTCTTCAACCTGTCCCTGAACCCTGATCTGAAGCAATCTCTGCTTTACCACCTGAATTCGATAATTGCCTCCTTGACCTCCGAGGAGTCCGACAGAGTAGCTTCCTCTCTGGTTTGTAGTTTGGCAATGCTTGACAAGAACAATGCCAAATTTGGCGTAGCAGGTACCATTCAGTTACTAGTCAAGGCCATTTCCGGGTCTGGCAGTCCTGTTGCTCATCACCTCCTCAGCTCTCTAGCTGAGCTTGTTCAGTTCCACAGGAACTGCACTTTGGCAGTGAGAGAAGGAGCTGTTGAAGCGCTCATCCAAGTGGTGGGGGCTGAATGTTTGAGCAAAACCAACCAAATTGTGAGCTTAATGGTAGAAGTGTTCAAGGGGAGGTGCATGCTGAGTAAGGAAGGTGCAGCTGAAATCCTGCTGCTCCTGTTTGATGAAAGTGAGGGCTGCGTAAGAGACGCTTTGAGGCTGCCAGACTTCTCAACTTTGGGCGGCGTTGCTGATGAAGAAGATCATGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

367

Amino Acids

39.57

Weight (kDa)

9.41

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	731
Acc65I	GGTACC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	743
AccB7I	CCANNNNNTGG	1 cut(s)	892
AccBSI	CCGCTC	2 cut(s)	305, 317
AccII	CGCG	5 cut(s)	69, 71, 152, 168, 471
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	3 cut(s)	78, 634, 728
AcuI	CTGAAG	3 cut(s)	537, 548, 629
AfaI	GTAC	3 cut(s)	74, 441, 745
AfeI	AGCGCT	1 cut(s)	879
AfiI	CCNNNNNNNGG	2 cut(s)	774, 892
AflII	CTTAAG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	394, 586, 875, 952
AhlI	ACTAGT	1 cut(s)	757
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
Alw26I	GTCTC	2 cut(s)	237, 1026
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	843
Ama87I	CYCGRG	1 cut(s)	493
Aor51HI	AGCGCT	1 cut(s)	879
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	5 cut(s)	523, 983, 997, 1023, 1045
ApoI	RAATTY	3 cut(s)	78, 634, 728
Asp718I	GGTACC	1 cut(s)	743
AspLEI	GCGC	3 cut(s)	71, 168, 880
AsuC2I	CCSGG	2 cut(s)	185, 775
AsuHPI	GGTGA	2 cut(s)	547, 791
AvaI	CYCGRG	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	3 cut(s)	211, 265, 806
BbvI	GCAGC	5 cut(s)	535, 984, 995, 1010, 1032
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	2 cut(s)	48, 274
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	2 cut(s)	185, 775
BcoDI	GTCTC	2 cut(s)	237, 1026
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	2 cut(s)	758, 815
BfoI	RGCGCY	1 cut(s)	881
BfrI	CTTAAG	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	731
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	8 cut(s)	207, 315, 524, 984, 998, 1024, 1046, 1069
BlpI	GCTNAGC	2 cut(s)	189, 819
BlsI	GCNGC	8 cut(s)	208, 316, 525, 985, 999, 1025, 1047, 1070
BmcAI	AGTACT	1 cut(s)	441
Bme1390I	CCNGG	2 cut(s)	185, 775
BmeT110I	CYCGRG	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	2 cut(s)	185, 775
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	4 cut(s)	18, 211, 265, 806
Bpu1102I	GCTNAGC	2 cut(s)	189, 819
BpuMI	CCSGG	2 cut(s)	185, 775
BsaJI	CCNNGG	3 cut(s)	183, 461, 660
BsaXI	ACNNNNNCTCC	6 cut(s)	105, 135, 314, 344, 426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	774, 892
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	2 cut(s)	324, 711
BseDI	CCNNGG	3 cut(s)	183, 461, 660
BseGI	GGATG	1 cut(s)	882
BseLI	CCNNNNNNNGG	2 cut(s)	774, 892
BseMI	GCAATG	2 cut(s)	324, 711
BseMII	CTCAG	7 cut(s)	203, 225, 279, 515, 810, 820, 959
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	6 cut(s)	126, 253, 297, 450, 677, 794
BseXI	GCAGC	5 cut(s)	535, 984, 995, 1010, 1032
BsgI	GTGCAG	3 cut(s)	542, 829, 1002
Bsh1236I	CGCG	5 cut(s)	69, 71, 152, 168, 471
BshFI	GGCC	1 cut(s)	767
BshNI	GGYRCC	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	185, 774
BslFI	GGGAC	3 cut(s)	81, 511, 577
BslI	CCNNNNNNNGG	2 cut(s)	774, 892
BsmAI	GTCTC	2 cut(s)	237, 1026
BsmBI	CGTCTC	2 cut(s)	237, 1026
BsmFI	GGGAC	3 cut(s)	81, 511, 577
BsnI	GGCC	1 cut(s)	767
BsoBI	CYCGRG	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	224, 361, 604, 1087
Bsp1720I	GCTNAGC	2 cut(s)	189, 819
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	7 cut(s)	202, 224, 278, 514, 811, 819, 960
BspFNI	CGCG	5 cut(s)	69, 71, 152, 168, 471
BspLI	GGNNCC	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	743
BspTI	CTTAAG	1 cut(s)	409
BsrBI	CCGCTC	2 cut(s)	305, 317
BsrDI	GCAATG	2 cut(s)	324, 711
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	183, 461, 660
BssMI	GATC	4 cut(s)	224, 361, 604, 1087
Bst6I	CTCTTC	1 cut(s)	587
BstAFI	CTTAAG	1 cut(s)	409
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstC8I	GCNNGC	3 cut(s)	416, 420, 965
BstDEI	CTNAG	8 cut(s)	18, 189, 211, 265, 501, 806, 819, 968
BstF5I	GGATG	1 cut(s)	882
BstFNI	CGCG	5 cut(s)	69, 71, 152, 168, 471
BstH2I	RGCGCY	1 cut(s)	881
BstHHI	GCGC	3 cut(s)	71, 168, 880
BstKTI	GATC	4 cut(s)	227, 364, 607, 1090
BstMAI	GTCTC	2 cut(s)	237, 1026
BstMBI	GATC	4 cut(s)	224, 361, 604, 1087
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 311, 619, 875
BstNSI	RCATGY	2 cut(s)	418, 967
BstSCI	CCNGG	2 cut(s)	183, 773
BstUI	CGCG	5 cut(s)	69, 71, 152, 168, 471
BstV1I	GCAGC	5 cut(s)	535, 984, 995, 1010, 1032
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	767
BtsCI	GGATG	1 cut(s)	882
BtsI	GCAGTG	3 cut(s)	11, 491, 861
BtsIMutI	CAGTG	3 cut(s)	11, 491, 861
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	416, 420, 965
CaiI	CAGNNNCTG	1 cut(s)	843
CfoI	GCGC	3 cut(s)	71, 168, 880
CseI	GACGC	3 cut(s)	153, 258, 1043
Csp6I	GTAC	3 cut(s)	73, 440, 744
CviAII	CATG	4 cut(s)	371, 415, 964, 1091
CviQI	GTAC	3 cut(s)	73, 440, 744
DdeI	CTNAG	8 cut(s)	18, 189, 211, 265, 501, 806, 819, 968
DpnI	GATC	4 cut(s)	226, 363, 606, 1089
DpnII	GATC	4 cut(s)	224, 361, 604, 1087
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Eco47III	AGCGCT	1 cut(s)	879
Eco57I	CTGAAG	3 cut(s)	537, 548, 629
Eco88I	CYCGRG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	634
Esp3I	CGTCTC	2 cut(s)	237, 1026
FaeI	CATG	4 cut(s)	374, 418, 967, 1094
FaiI	YATR	5 cut(s)	372, 383, 416, 965, 1092
FalI	AAGNNNNNCTT	2 cut(s)	1021, 1053
FaqI	GGGAC	3 cut(s)	81, 511, 577
FatI	CATG	4 cut(s)	370, 414, 963, 1090
FauI	CCCGC	3 cut(s)	106, 319, 353
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	8 cut(s)	207, 315, 524, 984, 998, 1024, 1046, 1069
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	8 cut(s)	207, 315, 524, 984, 998, 1024, 1046, 1069
FspBI	CTAG	2 cut(s)	758, 815
GlaI	GCGC	3 cut(s)	70, 167, 879
GluI	GCNGC	8 cut(s)	207, 315, 524, 984, 998, 1024, 1046, 1069
HaeII	RGCGCY	1 cut(s)	881
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	2 cut(s)	185, 774
HgaI	GACGC	3 cut(s)	153, 258, 1043
HhaI	GCGC	3 cut(s)	71, 168, 880
Hin1II	CATG	4 cut(s)	374, 418, 967, 1094
Hin6I	GCGC	3 cut(s)	69, 166, 878
HinP1I	GCGC	3 cut(s)	69, 166, 878
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	4 cut(s)	499, 509, 562, 665
HpaII	CCGG	2 cut(s)	185, 774
HphI	GGTGA	2 cut(s)	547, 791
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	5 cut(s)	465, 508, 609, 661, 670
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	4 cut(s)	288, 523, 857, 971
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	91, 385, 523, 846, 963, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 311, 619, 875
HpyF3I	CTNAG	8 cut(s)	18, 189, 211, 265, 501, 806, 819, 968
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	4 cut(s)	374, 418, 967, 1094
HspAI	GCGC	3 cut(s)	69, 166, 878
KpnI	GGTACC	1 cut(s)	747
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	224, 361, 604, 1087
LmnI	GCTCC	6 cut(s)	198, 310, 322, 463, 866, 1005
Lsp1109I	GCAGC	5 cut(s)	535, 984, 995, 1010, 1032
MaeI	CTAG	2 cut(s)	758, 815
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	61, 753
MalI	GATC	4 cut(s)	226, 363, 606, 1089
MbiI	CCGCTC	2 cut(s)	305, 317
MboI	GATC	4 cut(s)	224, 361, 604, 1087
MboII	GAAGA	4 cut(s)	264, 574, 1094, 1097
MfeI	CAATTG	2 cut(s)	86, 477
MflI	RGATCY	1 cut(s)	224
MluCI	AATT	9 cut(s)	78, 86, 351, 376, 477, 634, 642, 728, 924
MlyI	GAGTC	3 cut(s)	493, 503, 674
MmeI	TCCRAC	1 cut(s)	693
MseI	TTAA	3 cut(s)	350, 410, 935
MslI	CAYNNNNRTG	2 cut(s)	369, 887
MspA1I	CMGCKG	2 cut(s)	526, 986
MspCI	CTTAAG	1 cut(s)	409
MspI	CCGG	2 cut(s)	185, 774
MspR9I	CCNGG	2 cut(s)	185, 775
MunI	CAATTG	2 cut(s)	86, 477
MvnI	CGCG	5 cut(s)	69, 71, 152, 168, 471
MwoI	GCNNNNNNNGC	4 cut(s)	212, 311, 619, 875
NciI	CCSGG	2 cut(s)	185, 775
NdeII	GATC	4 cut(s)	224, 361, 604, 1087
NlaIII	CATG	4 cut(s)	374, 418, 967, 1094
NlaIV	GGNNCC	1 cut(s)	745
NspI	RCATGY	2 cut(s)	418, 967
PaeI	GCATGC	2 cut(s)	418, 967
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	562
PflFI	GACNNNGTC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	892
PkrI	GCNGC	8 cut(s)	208, 316, 525, 985, 999, 1025, 1047, 1070
PleI	GAGTC	3 cut(s)	493, 503, 673
PpsI	GAGTC	3 cut(s)	493, 503, 673
PspN4I	GGNNCC	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	843
PsuI	RGATCY	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	502
PvuII	CAGCTG	2 cut(s)	526, 986
RsaI	GTAC	3 cut(s)	74, 441, 745
RsaNI	GTAC	3 cut(s)	73, 440, 744
RseI	CAYNNNNRTG	2 cut(s)	369, 887
SaqAI	TTAA	3 cut(s)	350, 410, 935
SatI	GCNGC	8 cut(s)	207, 315, 524, 984, 998, 1024, 1046, 1069
Sau3AI	GATC	4 cut(s)	224, 361, 604, 1087
ScaI	AGTACT	1 cut(s)	441
SchI	GAGTC	3 cut(s)	493, 503, 674
ScrFI	CCNGG	2 cut(s)	185, 775
SmiMI	CAYNNNNRTG	2 cut(s)	369, 887
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SpeI	ACTAGT	1 cut(s)	757
SphI	GCATGC	2 cut(s)	418, 967
Sse9I	AATT	9 cut(s)	78, 86, 351, 376, 477, 634, 642, 728, 924
SspMI	CTAG	2 cut(s)	758, 815
StyD4I	CCNGG	2 cut(s)	183, 773
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	638
TasI	AATT	9 cut(s)	78, 86, 351, 376, 477, 634, 642, 728, 924
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	3 cut(s)	209, 317, 1071
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	3 cut(s)	350, 410, 935
Tru9I	TTAA	3 cut(s)	350, 410, 935
TscAI	CASTG	3 cut(s)	18, 491, 861
TseI	GCWGC	5 cut(s)	523, 983, 997, 1023, 1045
TspDTI	ATGAA	4 cut(s)	17, 359, 1026, 1095
TspRI	CASTG	3 cut(s)	18, 491, 861
Tth111I	GACNNNGTC	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	892
Vha464I	CTTAAG	1 cut(s)	409
XapI	RAATTY	3 cut(s)	78, 634, 728
XceI	RCATGY	2 cut(s)	418, 967
XspI	CTAG	2 cut(s)	758, 815
ZrmI	AGTACT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.