Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Reverse (-)

59138669 .. 59139616

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG392800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAACCCCTCTGAAACCAGCGCCGGGAGCAATGTCAGCAGTTCGGATTCGTGAGGCTATTAGGACGTGCCTCTCTGAGGCTCGGTCAGACTCGGGTGAAGTTCAGCAGAAAGCTCTTCAGACCTTGGTTTCCATCACCAAGGTGAGCCCCCAAAACAGAAACCTACTTGCACAAACAGAAGGAGCCATCCCTGCCTTACTCGCCCTCTCAAAATCTTCATCCAGCACCACTCAGATTCTCGCATTGTCCATCCTCTTCAACCTTTCCCTGAATCTTGATCTAAAGCTATCACTAGCAGATATAGAAACCATTTACCACCTCAATACCATAATTTCCGACCCAACAGAATCTGGCAAGCTAGCATCCTCACTGGTCTGCAGTTTAGCTATGCTCGACAAGAACAAGGCCAAGTTCGGAGTAGCAGGCACAATCCAATTGCTTGTCAATGCCATATCAGGTCCCCGTGGTCCTGCTGCTCATCACCTCCTTAGCTCTCTCGCTGAGCTTGTTCGGTTCCATGGGAACTGCACTGTGGCAGTGAGAGAAGGTGCTGTTCCTGCGCTTCTCCAAATGGTGGAGAGCACCGATGGTGAGGACCTAGCCGGAACCTCTCTTCTGGTCCTAGGCCTCCTTGCAAGGTTTGATGAAGGGCTGAGTGCTTTGAACAAAACTGAGCAGATTGTGAGTTCAATGGTACAAGTGTTCAAAGGGAGGTGCATGTTGAGCAAGGAAGGTGCAGCTGAACTTCTGCTTCTCCTCTTTGATGAAAGCGAGGGATGTGTGAGAGATGCTCTGAGGCTTCAAGATTTTTCGAGTTTGGTTGCTGATATTTCAGTCAGAGGATCAGCTAGAGCTAGAGAGAAGGCTGCTTTGCTGATGAAGAAGATGATGGATGCTGACATGGATTCTTATGTGGATGGAAACCCCATGTTTTCCCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

315

Amino Acids

33.6

Weight (kDa)

5.88

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	20 - 306	4.9e-11	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	20 - 163	7.2e-08	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AclWI	GGATC	1 cut(s)	853
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	3 cut(s)	26, 79, 577
AgsI	TTSAA	5 cut(s)	262, 667, 693, 709, 806
AjiI	CACGTC	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	143
AluBI	AGCT	9 cut(s)	116, 289, 361, 389, 495, 508, 743, 851, 857
AluI	AGCT	9 cut(s)	116, 289, 361, 389, 495, 508, 743, 851, 857
Alw21I	GWGCWC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	853
AlwNI	CAGNNNCTG	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	2 cut(s)	408, 628
ApeKI	GCWGC	3 cut(s)	476, 740, 869
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	25, 565
AspS9I	GGNCC	4 cut(s)	461, 470, 598, 622
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	5 cut(s)	110, 130, 157, 476, 605
AsuNHI	GCTAGC	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	4 cut(s)	461, 470, 598, 622
AvrII	CCTAGG	1 cut(s)	625
BaeI	ACNNNNGTAYC	2 cut(s)	689, 722
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	463, 752, 856
BccI	CCATC	6 cut(s)	143, 197, 260, 584, 886, 914
BcnI	CCSGG	1 cut(s)	27
BfaI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	477, 741, 870
BlnI	CCTAGG	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	3 cut(s)	478, 742, 871
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	4 cut(s)	461, 470, 598, 622
BmeT110I	CYCGRG	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	4 cut(s)	461, 470, 598, 622
BmiI	GGNNCC	4 cut(s)	187, 463, 518, 610
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	3 cut(s)	374, 781, 886
BmtI	GCTAGC	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	934
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
Bpu10I	CCTNAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	5 cut(s)	126, 141, 466, 520, 625
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 79, 577
Bse1I	ACTGG	2 cut(s)	378, 940
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	5 cut(s)	126, 141, 466, 520, 625
BseGI	GGATG	7 cut(s)	189, 221, 252, 365, 785, 901, 925
BseLI	CCNNNNNNNGG	3 cut(s)	26, 79, 577
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	6 cut(s)	69, 248, 495, 647, 666, 788
BseNI	ACTGG	2 cut(s)	378, 940
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	3 cut(s)	463, 752, 856
BsgI	GTGCAG	2 cut(s)	514, 759
BshFI	GGCC	2 cut(s)	410, 630
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	26, 606
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	26, 79, 577
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	410, 630
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	152, 587
Bsp143I	GATC	2 cut(s)	280, 845
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	1 cut(s)	520
BspANI	GGCC	2 cut(s)	410, 630
BspCNI	CTCAG	6 cut(s)	70, 247, 496, 648, 667, 789
BspLI	GGNNCC	4 cut(s)	187, 463, 518, 610
BspMAI	CTGCAG	1 cut(s)	383
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	853
BspQI	GCTCTTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	378, 940
BssECI	CCNNGG	5 cut(s)	126, 141, 466, 520, 625
BssMI	GATC	2 cut(s)	280, 845
BssT1I	CCWWGG	4 cut(s)	126, 141, 520, 625
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	3 cut(s)	123, 263, 621
BstC8I	GCNNGC	3 cut(s)	359, 363, 427
BstDEI	CTNAG	7 cut(s)	78, 234, 491, 504, 656, 675, 797
BstDSI	CCRYGG	2 cut(s)	466, 520
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	7 cut(s)	189, 221, 252, 365, 785, 901, 925
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 565
BstKTI	GATC	2 cut(s)	283, 848
BstMBI	GATC	2 cut(s)	280, 845
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 38, 194, 203, 560, 726
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	463, 752, 856
BsuRI	GGCC	2 cut(s)	410, 630
BtgI	CCRYGG	2 cut(s)	466, 520
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	7 cut(s)	189, 221, 252, 365, 785, 901, 925
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	4 cut(s)	371, 531, 546, 947
Cac8I	GCNNGC	3 cut(s)	359, 363, 427
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	2 cut(s)	25, 565
Cfr13I	GGNCC	4 cut(s)	461, 470, 598, 622
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	4 cut(s)	521, 721, 904, 931
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	7 cut(s)	78, 234, 491, 504, 656, 675, 797
DpnI	GATC	2 cut(s)	282, 847
DpnII	GATC	2 cut(s)	280, 845
Eam1104I	CTCTTC	3 cut(s)	123, 263, 621
EarI	CTCTTC	3 cut(s)	123, 263, 621
Eco130I	CCWWGG	4 cut(s)	126, 141, 520, 625
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	4 cut(s)	461, 470, 598, 622
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	461, 598
EcoT14I	CCWWGG	4 cut(s)	126, 141, 520, 625
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	4 cut(s)	126, 141, 520, 625
FaeI	CATG	4 cut(s)	524, 724, 907, 934
FaiI	YATR	9 cut(s)	305, 332, 392, 455, 522, 722, 905, 915, 932
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	4 cut(s)	520, 720, 903, 930
Fnu4HI	GCNGC	3 cut(s)	477, 741, 870
FokI	GGATG	7 cut(s)	176, 208, 239, 352, 792, 908, 932
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	477, 741, 870
FspBI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
GlaI	GCGC	2 cut(s)	24, 564
GluI	GCNGC	3 cut(s)	477, 741, 870
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	410, 630
HapII	CCGG	2 cut(s)	26, 606
HhaI	GCGC	2 cut(s)	25, 565
Hin1II	CATG	4 cut(s)	524, 724, 907, 934
Hin6I	GCGC	2 cut(s)	23, 563
HinP1I	GCGC	2 cut(s)	23, 563
HinfI	GANTC	6 cut(s)	49, 92, 238, 274, 350, 908
HpaII	CCGG	2 cut(s)	26, 606
HphI	GGTGA	5 cut(s)	110, 130, 157, 476, 605
Hpy188III	TCNNGA	3 cut(s)	53, 278, 806
HpyAV	CCTTC	5 cut(s)	176, 542, 644, 728, 859
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	173, 381, 531, 638, 720, 740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 38, 194, 203, 560, 726
HpyF3I	CTNAG	7 cut(s)	78, 234, 491, 504, 656, 675, 797
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	524, 724, 907, 934
HspAI	GCGC	2 cut(s)	23, 563
Kzo9I	GATC	2 cut(s)	280, 845
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	29, 185
Lsp1109I	GCAGC	3 cut(s)	463, 752, 856
LweI	GCATC	3 cut(s)	374, 781, 886
MaeI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
MaeII	ACGT	1 cut(s)	68
MalI	GATC	2 cut(s)	282, 847
MboI	GATC	2 cut(s)	280, 845
MboII	GAAGA	6 cut(s)	110, 210, 250, 608, 895, 898
MfeI	CAATTG	1 cut(s)	437
MhlI	GDGCHC	2 cut(s)	152, 587
MluCI	AATT	2 cut(s)	333, 437
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	2 cut(s)	26, 606
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	437
MwoI	GCNNNNNNNGC	6 cut(s)	29, 38, 194, 203, 560, 726
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	2 cut(s)	280, 845
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	4 cut(s)	524, 724, 907, 934
NlaIV	GGNNCC	4 cut(s)	187, 463, 518, 610
NspI	RCATGY	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	5 cut(s)	49, 238, 274, 350, 908
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	478, 742, 871
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	2 cut(s)	461, 598
Psp5II	RGGWCCY	2 cut(s)	461, 598
PspN4I	GGNNCC	4 cut(s)	187, 463, 518, 610
PspPI	GGNCC	4 cut(s)	461, 470, 598, 622
PspPPI	RGGWCCY	2 cut(s)	461, 598
PstI	CTGCAG	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	123
SatI	GCNGC	3 cut(s)	477, 741, 870
Sau3AI	GATC	2 cut(s)	280, 845
Sau96I	GGNCC	4 cut(s)	461, 470, 598, 622
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	152, 587
SfaNI	GCATC	3 cut(s)	374, 781, 886
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	4 cut(s)	461, 470, 598, 622
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	333, 437
SseBI	AGGCCT	1 cut(s)	630
SspMI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	4 cut(s)	126, 141, 520, 625
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	396, 815
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	333, 437
TfiI	GAWTC	5 cut(s)	49, 238, 274, 350, 908
TscAI	CASTG	4 cut(s)	378, 538, 546, 947
TseI	GCWGC	3 cut(s)	476, 740, 869
TspDTI	ATGAA	4 cut(s)	210, 663, 783, 896
TspRI	CASTG	4 cut(s)	378, 538, 546, 947
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	4 cut(s)	461, 470, 598, 622
XagI	CCTNNNNNAGG	1 cut(s)	77
XceI	RCATGY	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	625
XspI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.