Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Forward (+)

14420231 .. 14421658

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1145200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCAGCTCCTCGGATATGCGAGGCAATTAGGCAGTGCTTCTCGGAGACTCAGTCTGACTCTCCTGAAGTGCAGCTGAAGGCTCTTCACACTTTAGTTTCCATCACCAAGGTGAGTTCCCAAAACAGGAACTTGGTTGCACAGACAGAAGGAGCCATCCCAGCCTTACTTGCGCTCTCGAAATCTTCCTCCGACAACATTCAGATTCTCTCGTTGTCTGTCCTCTTCAACCTGTCCCTGAACCCTGATCTGAAGCAATCTCTGCTTTACCACCTGAATTCGATAATTGCCTCCTTGACCTCGACGGAGTCCGGCAGAGTAGCTTCCTCTCTGGTTTGTAGTTTGGCAATGCTTGACAAGAACAAGGCCAAATTTGGCGTAGCAGGTACCATCCAGTTACTAGTCAAGGCCATTTCCGGGTCTGGCAGTCCTGCTGCTCATCACCTCCTCAGCTCTCTAGCTGAGCTTGTTCAGTTCCACGGGAACTGCGCTTTGGCAGTGAAAGAAGGAGCTGTTGAAGCGCTCATCCAAGTGGTGGGGAGAAGTGACGGCGAGGATCTGGCCGGAACTTCTCTCCTGTTTCTTGGCCTTCTTGCTAGGTTTGATGAAGGGCTGAATGCTTTGCGCAAAACTGACCAGATTGTGAGCTCAATGGTACAAGTGTTCAAAGGGAGGTGCATGCTGAGTAAGGAAGGTGCAGCTGAAATCATGCTGCTCCTGTTTGATGAAAGTGAGGGCTGCGTAAGAGACGCTTTGAGGCTGCCGGACTTCTCAACTTTGGTGGCTGATGTTTCGGTTAGAGGGTCGGGGAGAGCACGAGAGAAGGCGGCGTTGCTGATGAAGAAGATCATGGAGGCTGACTTGGATTCTTATGTGGATGGGAACTCCATGTTTTCTGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

302

Amino Acids

32.16

Weight (kDa)

5.79

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	7 - 283	5e-08	Plant U-box protein ARM repeat region
Arm_2	PF04826	22 - 108	8.5e-06	Armadillo-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	535
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	277, 371
AcuI	CTGAAG	3 cut(s)	87, 98, 272
AfaI	GTAC	2 cut(s)	388, 657
AfeI	AGCGCT	1 cut(s)	522
AfiI	CCNNNNNNNGG	3 cut(s)	126, 417, 535
AgsI	TTSAA	3 cut(s)	229, 518, 667
AhlI	ACTAGT	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	9 cut(s)	8, 76, 323, 453, 461, 466, 512, 648, 701
AluI	AGCT	9 cut(s)	8, 76, 323, 453, 461, 466, 512, 648, 701
Alw21I	GWGCWC	2 cut(s)	650, 817
Alw26I	GTCTC	2 cut(s)	41, 741
AlwI	GGATC	1 cut(s)	564
Aor51HI	AGCGCT	1 cut(s)	522
AoxI	GGCC	4 cut(s)	366, 408, 561, 586
ApeKI	GCWGC	6 cut(s)	73, 434, 698, 712, 738, 760
ApoI	RAATTY	2 cut(s)	277, 371
Asp718I	GGTACC	1 cut(s)	386
AspLEI	GCGC	4 cut(s)	175, 491, 523, 627
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	97, 124, 434
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	650
BauI	CACGAG	1 cut(s)	816
Bbv12I	GWGCWC	2 cut(s)	650, 817
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	6 cut(s)	85, 421, 699, 710, 725, 747
BccI	CCATC	4 cut(s)	110, 164, 398, 872
BceAI	ACGGC	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	41, 741
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	3 cut(s)	401, 458, 597
BfoI	RGCGCY	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	7 cut(s)	74, 435, 699, 713, 739, 761, 828
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	7 cut(s)	75, 436, 700, 714, 740, 762, 829
Bme1390I	CCNGG	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	154, 388
BmrFI	CCNGG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	11, 108, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 417, 535
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	11, 108, 478
BseGI	GGATG	4 cut(s)	156, 390, 525, 883
BseLI	CCNNNNNNNGG	3 cut(s)	126, 417, 535
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	5 cut(s)	65, 453, 463, 674, 888
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	6 cut(s)	85, 421, 699, 710, 725, 747
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	2 cut(s)	92, 717
BshFI	GGCC	4 cut(s)	368, 410, 563, 588
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	650, 817
BsiSI	CCGG	4 cut(s)	312, 417, 564, 764
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	126, 417, 535
BsmAI	GTCTC	2 cut(s)	41, 741
BsmBI	CGTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	368, 410, 563, 588
Bsp1286I	GDGCHC	2 cut(s)	650, 817
Bsp143I	GATC	3 cut(s)	247, 556, 846
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	4 cut(s)	368, 410, 563, 588
BspCNI	CTCAG	5 cut(s)	64, 454, 462, 675, 889
BspLI	GGNNCC	2 cut(s)	154, 388
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	564
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	11, 108, 478
BssMI	GATC	3 cut(s)	247, 556, 846
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	816
Bst6I	CTCTTC	2 cut(s)	90, 230
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	5 cut(s)	51, 449, 462, 683, 897
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	4 cut(s)	156, 390, 525, 883
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	4 cut(s)	175, 491, 523, 627
BstKTI	GATC	3 cut(s)	250, 559, 849
BstMAI	GTCTC	2 cut(s)	41, 741
BstMBI	GATC	3 cut(s)	247, 556, 846
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 262, 518
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	416
BstV1I	GCAGC	6 cut(s)	85, 421, 699, 710, 725, 747
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	368, 410, 563, 588
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	4 cut(s)	156, 390, 525, 883
BtsI	GCAGTG	2 cut(s)	41, 504
BtsIMutI	CAGTG	2 cut(s)	41, 504
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	680
CfoI	GCGC	4 cut(s)	175, 491, 523, 627
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	387, 656
CspCI	CAANNNNNGTGG	2 cut(s)	762, 797
CviAII	CATG	4 cut(s)	679, 709, 850, 889
CviQI	GTAC	2 cut(s)	387, 656
DdeI	CTNAG	5 cut(s)	51, 449, 462, 683, 897
DpnI	GATC	3 cut(s)	249, 558, 848
DpnII	GATC	3 cut(s)	247, 556, 846
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	90, 230
EarI	CTCTTC	2 cut(s)	90, 230
Ecl136II	GAGCTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	650
Eco47III	AGCGCT	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	648
Eco57I	CTGAAG	3 cut(s)	87, 98, 272
EcoICRI	GAGCTC	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	741
FaeI	CATG	4 cut(s)	682, 712, 853, 892
FaiI	YATR	6 cut(s)	19, 680, 710, 851, 873, 890
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	4 cut(s)	678, 708, 849, 888
Fnu4HI	GCNGC	7 cut(s)	74, 435, 699, 713, 739, 761, 828
FokI	GGATG	4 cut(s)	143, 377, 512, 890
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	7 cut(s)	74, 435, 699, 713, 739, 761, 828
FspBI	CTAG	3 cut(s)	401, 458, 597
FspI	TGCGCA	1 cut(s)	626
GlaI	GCGC	4 cut(s)	174, 490, 522, 626
GluI	GCNGC	7 cut(s)	74, 435, 699, 713, 739, 761, 828
GsaI	CCCAGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	4 cut(s)	368, 410, 563, 588
HapII	CCGG	4 cut(s)	312, 417, 564, 764
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	4 cut(s)	175, 491, 523, 627
Hin1II	CATG	4 cut(s)	682, 712, 853, 892
Hin6I	GCGC	4 cut(s)	173, 489, 521, 625
HinP1I	GCGC	4 cut(s)	173, 489, 521, 625
HinfI	GANTC	5 cut(s)	49, 59, 205, 308, 866
HpaII	CCGG	4 cut(s)	312, 417, 564, 764
HphI	GGTGA	3 cut(s)	97, 124, 434
Hpy188I	TCNGA	7 cut(s)	15, 46, 58, 193, 204, 252, 898
Hpy188III	TCNNGA	2 cut(s)	65, 178
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	7 cut(s)	73, 143, 500, 599, 602, 686, 817
HpyCH4V	TGCA	4 cut(s)	73, 140, 678, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 262, 518
HpyF3I	CTNAG	5 cut(s)	51, 449, 462, 683, 897
Hsp92II	CATG	4 cut(s)	682, 712, 853, 892
HspAI	GCGC	4 cut(s)	173, 489, 521, 625
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	247, 556, 846
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	4 cut(s)	13, 152, 509, 720
Lsp1109I	GCAGC	6 cut(s)	85, 421, 699, 710, 725, 747
MaeI	CTAG	3 cut(s)	401, 458, 597
MaeIII	GTNAC	2 cut(s)	396, 545
MalI	GATC	3 cut(s)	249, 558, 848
MboI	GATC	3 cut(s)	247, 556, 846
MboII	GAAGA	5 cut(s)	77, 177, 217, 853, 856
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	650, 817
MluCI	AATT	4 cut(s)	27, 277, 285, 371
MlyI	GAGTC	3 cut(s)	43, 53, 317
MmeI	TCCRAC	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	110, 530
MspA1I	CMGCKG	2 cut(s)	76, 701
MspI	CCGG	4 cut(s)	312, 417, 564, 764
MspR9I	CCNGG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	622
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 262, 518
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	3 cut(s)	247, 556, 846
NlaIII	CATG	4 cut(s)	682, 712, 853, 892
NlaIV	GGNNCC	2 cut(s)	154, 388
NmuCI	GTSAC	1 cut(s)	545
NsbI	TGCGCA	1 cut(s)	626
NspI	RCATGY	1 cut(s)	682
OliI	CACNNNNGTG	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	205, 866
PflFI	GACNNNGTC	2 cut(s)	52, 307
PflMI	CCANNNNNTGG	1 cut(s)	535
PkrI	GCNGC	7 cut(s)	75, 436, 700, 714, 740, 762, 829
PleI	GAGTC	3 cut(s)	43, 53, 316
PpsI	GAGTC	3 cut(s)	43, 53, 316
Psp124BI	GAGCTC	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	154, 388
PsuI	RGATCY	1 cut(s)	556
PsyI	GACNNNGTC	2 cut(s)	52, 307
PvuII	CAGCTG	2 cut(s)	76, 701
RsaI	GTAC	2 cut(s)	388, 657
RsaNI	GTAC	2 cut(s)	387, 656
RseI	CAYNNNNRTG	2 cut(s)	110, 530
SacI	GAGCTC	1 cut(s)	650
SapI	GCTCTTC	1 cut(s)	90
SatI	GCNGC	7 cut(s)	74, 435, 699, 713, 739, 761, 828
Sau3AI	GATC	3 cut(s)	247, 556, 846
SchI	GAGTC	3 cut(s)	43, 53, 317
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	2 cut(s)	650, 817
SmiMI	CAYNNNNRTG	2 cut(s)	110, 530
SpeI	ACTAGT	1 cut(s)	400
SphI	GCATGC	1 cut(s)	682
Sse9I	AATT	4 cut(s)	27, 277, 285, 371
SsiI	CCGC	1 cut(s)	827
SspMI	CTAG	3 cut(s)	401, 458, 597
SstI	GAGCTC	1 cut(s)	650
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	3 cut(s)	179, 281, 302
TasI	AATT	4 cut(s)	27, 277, 285, 371
TauI	GCSGC	1 cut(s)	830
TfiI	GAWTC	2 cut(s)	205, 866
TscAI	CASTG	2 cut(s)	41, 504
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	6 cut(s)	73, 434, 698, 712, 738, 760
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	621, 741, 854
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	41, 504
Tth111I	GACNNNGTC	2 cut(s)	52, 307
Van91I	CCANNNNNTGG	1 cut(s)	535
XapI	RAATTY	2 cut(s)	277, 371
XceI	RCATGY	1 cut(s)	682
XspI	CTAG	3 cut(s)	401, 458, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.