Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Forward (+)

39341834 .. 39342757

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G473500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCGTCTGCCCGGGTTCGTGAGGTGATCAGGCAGTGCCTCTCTGAGGCGCAGTCATCAGACTTTCATGAAGCGGAGCAAAAAGCTCTTCAGACCCTAGTTTCCATCACCAAGGTCAGTCCCCTAAACAGGAACTTGCTTGCACTAACAGAAGGAGCCATCCCTGCTTTACTTACCCTCTCAAAATCTTCCTCTGACATCATTCAGATTCTCTCATTGTCCATCCTCTTCAACCTCTCCCTCAACCCTGATCTAAATTTGGCAATGCTTGACAAGAACAAGGCCAAGTTTGGGGTGGCAGGTACCATCCAGTTGCTTGTCAAGGCCATTGCTGGTCCCCGCTGTCCTGCTGCTCATCACCTCCTTAGCTCTCTAGCCGAGCTTGTCCGGTTCCATGGGAACTGCACACTGGCAGTGAGAGAAGGAGCTGTTCAAGCTCTTATCCAAGTGGTGGAGAGCACCGATGGCGAGGATCTAGCTGGAACTTCTCTTCTGGTTCTAGCCCTTCTTGCAAGGTTCGATGAAGGATTGAATGCTCTGAGAAAAACTGACCAGATTGTGAGTAAGATGGTAGATGTGTTGAAGGGGAGGTGCATGCTGAGCAAGGAGGGTGCAGCTGAAATCCTGCTTCTCCTGTTTGAGGAAAGTGAGGGCTGTGTGAGAGATGCGTTGAGGCTGCCGGACTTCTCAACTTTGATAGCTGATATTTCAGTCAGAGGATCGGCTCGAGCTCGAGAGAAGGCGGCTTTGCTGCTGAAGAAGATCATGGATGCTGACTTGGATTCTTATGTGGATGGAAACCCCATGTTTTCGCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

274

Amino Acids

29.51

Weight (kDa)

5.87

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	451
AciI	CCGC	3 cut(s)	74, 340, 743
AclWI	GGATC	2 cut(s)	480, 727
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	74, 776
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	5 cut(s)	46, 129, 291, 451, 640
AgsI	TTSAA	4 cut(s)	232, 434, 532, 583
AluBI	AGCT	9 cut(s)	86, 369, 382, 428, 437, 479, 617, 701, 731
AluI	AGCT	9 cut(s)	86, 369, 382, 428, 437, 479, 617, 701, 731
Alw21I	GWGCWC	2 cut(s)	461, 733
AlwI	GGATC	2 cut(s)	480, 727
Ama87I	CYCGRG	3 cut(s)	12, 726, 732
AoxI	GGCC	2 cut(s)	282, 324
ApeKI	GCWGC	4 cut(s)	350, 614, 676, 751
ApoI	RAATTY	1 cut(s)	256
Asp718I	GGTACC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	2 cut(s)	13, 14
AsuHPI	GGTGA	3 cut(s)	37, 100, 350
AvaI	CYCGRG	3 cut(s)	12, 726, 732
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	733
Bbv12I	GWGCWC	2 cut(s)	461, 733
BbvI	GCAGC	4 cut(s)	337, 626, 663, 738
BccI	CCATC	7 cut(s)	113, 167, 230, 314, 458, 562, 788
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	13, 14
BfaI	CTAG	4 cut(s)	98, 374, 476, 500
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	5 cut(s)	351, 615, 677, 744, 752
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	5 cut(s)	352, 616, 678, 745, 753
Bme1390I	CCNGG	2 cut(s)	13, 14
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	3 cut(s)	12, 726, 732
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	4 cut(s)	157, 304, 337, 392
BmrFI	CCNGG	2 cut(s)	13, 14
BmsI	GCATC	2 cut(s)	655, 760
Bpu10I	CCTNAGC	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	13, 14
BsaJI	CCNNGG	3 cut(s)	12, 111, 394
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 129, 291, 451, 640
Bse1I	ACTGG	2 cut(s)	310, 414
Bse3DI	GCAATG	2 cut(s)	270, 327
BseDI	CCNNGG	3 cut(s)	12, 111, 394
BseGI	GGATG	5 cut(s)	159, 222, 306, 775, 799
BseLI	CCNNNNNNNGG	5 cut(s)	46, 129, 291, 451, 640
BseMI	GCAATG	2 cut(s)	270, 327
BseMII	CTCAG	3 cut(s)	36, 530, 590
BseNI	ACTGG	2 cut(s)	310, 414
BseXI	GCAGC	4 cut(s)	337, 626, 663, 738
BsgI	GTGCAG	2 cut(s)	388, 633
BshFI	GGCC	2 cut(s)	284, 326
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	461, 733
BsiHKCI	CYCGRG	3 cut(s)	12, 726, 732
BsiSI	CCGG	3 cut(s)	13, 388, 680
BslFI	GGGAC	2 cut(s)	105, 321
BslI	CCNNNNNNNGG	5 cut(s)	46, 129, 291, 451, 640
BsmFI	GGGAC	2 cut(s)	105, 321
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	284, 326
BsoBI	CYCGRG	3 cut(s)	12, 726, 732
Bsp1286I	GDGCHC	2 cut(s)	461, 733
Bsp143I	GATC	5 cut(s)	27, 250, 472, 719, 762
Bsp1720I	GCTNAGC	1 cut(s)	599
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	3 cut(s)	74, 340, 743
BspANI	GGCC	2 cut(s)	284, 326
BspCNI	CTCAG	3 cut(s)	37, 531, 591
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	157, 304, 337, 392
BspMI	ACCTGC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	480, 727
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	270, 327
BsrI	ACTGG	2 cut(s)	310, 414
BssECI	CCNNGG	3 cut(s)	12, 111, 394
BssMI	GATC	5 cut(s)	27, 250, 472, 719, 762
BssT1I	CCWWGG	2 cut(s)	111, 394
Bst6I	CTCTTC	3 cut(s)	93, 233, 495
BstC8I	GCNNGC	2 cut(s)	141, 596
BstDEI	CTNAG	4 cut(s)	45, 365, 539, 599
BstDSI	CCRYGG	1 cut(s)	394
BstENI	CCTNNNNNAGG	2 cut(s)	44, 638
BstF5I	GGATG	5 cut(s)	159, 222, 306, 775, 799
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	5 cut(s)	30, 253, 475, 722, 765
BstMBI	GATC	5 cut(s)	27, 250, 472, 719, 762
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 434, 465, 509, 600
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	11, 12
BstV1I	GCAGC	4 cut(s)	337, 626, 663, 738
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	284, 326
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	5 cut(s)	159, 222, 306, 775, 799
BtsI	GCAGTG	3 cut(s)	41, 420, 821
BtsIMutI	CAGTG	4 cut(s)	41, 407, 420, 821
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	141, 596
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	335
Cfr9I	CCCGGG	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	5 cut(s)	68, 395, 595, 766, 805
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	4 cut(s)	45, 365, 539, 599
DpnI	GATC	5 cut(s)	29, 252, 474, 721, 764
DpnII	GATC	5 cut(s)	27, 250, 472, 719, 762
Eam1104I	CTCTTC	3 cut(s)	93, 233, 495
EarI	CTCTTC	3 cut(s)	93, 233, 495
Ecl136II	GAGCTC	1 cut(s)	731
Eco130I	CCWWGG	2 cut(s)	111, 394
Eco24I	GRGCYC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	74, 776
Eco88I	CYCGRG	3 cut(s)	12, 726, 732
EcoICRI	GAGCTC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	2 cut(s)	44, 638
EcoT14I	CCWWGG	2 cut(s)	111, 394
EcoT38I	GRGCYC	1 cut(s)	733
ErhI	CCWWGG	2 cut(s)	111, 394
FaeI	CATG	5 cut(s)	71, 398, 598, 769, 808
FaiI	YATR	6 cut(s)	69, 396, 596, 767, 789, 806
FaqI	GGGAC	2 cut(s)	105, 321
FatI	CATG	5 cut(s)	67, 394, 594, 765, 804
FauI	CCCGC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	351, 615, 677, 744, 752
FokI	GGATG	5 cut(s)	146, 209, 293, 782, 806
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	5 cut(s)	351, 615, 677, 744, 752
FspBI	CTAG	4 cut(s)	98, 374, 476, 500
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	5 cut(s)	351, 615, 677, 744, 752
HaeIII	GGCC	2 cut(s)	284, 326
HapII	CCGG	3 cut(s)	13, 388, 680
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	5 cut(s)	71, 398, 598, 769, 808
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	2 cut(s)	208, 782
HpaII	CCGG	3 cut(s)	13, 388, 680
HphI	GGTGA	3 cut(s)	37, 100, 350
Hpy188I	TCNGA	7 cut(s)	46, 61, 93, 196, 207, 540, 716
Hpy188III	TCNNGA	3 cut(s)	20, 68, 734
HpyAV	CCTTC	6 cut(s)	146, 416, 515, 518, 577, 733
HpyCH4V	TGCA	5 cut(s)	143, 405, 512, 594, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 434, 465, 509, 600
HpyF3I	CTNAG	4 cut(s)	45, 365, 539, 599
Hsp92II	CATG	5 cut(s)	71, 398, 598, 769, 808
HspAI	GCGC	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	27, 250, 472, 719, 762
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	3 cut(s)	76, 155, 425
Lsp1109I	GCAGC	4 cut(s)	337, 626, 663, 738
LweI	GCATC	2 cut(s)	655, 760
MaeI	CTAG	4 cut(s)	98, 374, 476, 500
MalI	GATC	5 cut(s)	29, 252, 474, 721, 764
MboI	GATC	5 cut(s)	27, 250, 472, 719, 762
MboII	GAAGA	6 cut(s)	80, 180, 220, 482, 769, 772
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	2 cut(s)	461, 733
MluCI	AATT	1 cut(s)	256
MspA1I	CMGCKG	2 cut(s)	342, 617
MspI	CCGG	3 cut(s)	13, 388, 680
MspR9I	CCNGG	2 cut(s)	13, 14
Mva1269I	GAATGC	1 cut(s)	538
MwoI	GCNNNNNNNGC	5 cut(s)	164, 434, 465, 509, 600
NciI	CCSGG	2 cut(s)	13, 14
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	5 cut(s)	27, 250, 472, 719, 762
NlaIII	CATG	5 cut(s)	71, 398, 598, 769, 808
NlaIV	GGNNCC	4 cut(s)	157, 304, 337, 392
NmeAIII	GCCGAG	1 cut(s)	403
NspI	RCATGY	1 cut(s)	598
PaeI	GCATGC	1 cut(s)	598
PaeR7I	CTCGAG	2 cut(s)	726, 732
PagI	TCATGA	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	93
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	208, 782
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	5 cut(s)	352, 616, 678, 745, 753
Psp124BI	GAGCTC	1 cut(s)	733
PspN4I	GGNNCC	4 cut(s)	157, 304, 337, 392
PspPI	GGNCC	1 cut(s)	335
PspXI	VCTCGAGB	1 cut(s)	726
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	733
SapI	GCTCTTC	1 cut(s)	93
SatI	GCNGC	5 cut(s)	351, 615, 677, 744, 752
Sau3AI	GATC	5 cut(s)	27, 250, 472, 719, 762
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	13, 14
SduI	GDGCHC	2 cut(s)	461, 733
SfaNI	GCATC	2 cut(s)	655, 760
Sfr274I	CTCGAG	2 cut(s)	726, 732
SinI	GGWCC	1 cut(s)	335
SlaI	CTCGAG	2 cut(s)	726, 732
SmaI	CCCGGG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	726, 732
SmoI	CTYRAG	2 cut(s)	726, 732
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	74, 340, 743
SspMI	CTAG	4 cut(s)	98, 374, 476, 500
SstI	GAGCTC	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	11, 12
StyI	CCWWGG	2 cut(s)	111, 394
TaqI	TCGA	3 cut(s)	519, 727, 733
TasI	AATT	1 cut(s)	256
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	2 cut(s)	208, 782
TscAI	CASTG	4 cut(s)	41, 414, 420, 821
TseI	GCWGC	4 cut(s)	350, 614, 676, 751
TspDTI	ATGAA	3 cut(s)	56, 84, 537
TspMI	CCCGGG	1 cut(s)	12
TspRI	CASTG	4 cut(s)	41, 414, 420, 821
Van91I	CCANNNNNTGG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	2 cut(s)	44, 638
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XhoI	CTCGAG	2 cut(s)	726, 732
XmaI	CCCGGG	1 cut(s)	12
XspI	CTAG	4 cut(s)	98, 374, 476, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.