Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004500.1

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Reverse (-)

56704 .. 57618

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004500.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgtcagcagttcggattcgtgaggctattaggacgtgcctctctgaggctcggtcagactcgggtgaagttcagcagaaagctcttcagaccttggtttccatcaccaaggtgagcccccaaaacagaaacctacttgcacaaacagaaggagccatccctgccttactcgccctctcaaaatcttcatccagcaccactcggattctcgcattgtccatcctcttcaacctttccctgaatcttgatctaaagctatcactagcagatatagaaaccatttaccacctcaataccataatttccgacccaacagaatctggcaagctagcatcctcactggtctgcagtttagctatgctcgacaagaacaaggccaagttcggagtagcaggcacaatccaattgcttgtcaatgccatatcaggtccccgtggtcctgctgctcatcacctccttagctctctcgctgagcttgttcggttccatgggaactgcactgtggcagtgagagaaggtgctgttcctgcgcttctccaaatggtggagtgcaccgatggtgaggacctagccggaacctctcttctggtcctaggcctccttgcaaggtttgatgaagggctgagtgctttgagcaaaactgagcagattgtgagttcaatggtacaagtgttcaaagggaggtgcatgttgagcaaggaaggtgcagctgaacttctgcttctcctctttgacgaaagcgagggatgcgtgagagatgctctgaggcttcaagatttttcgagtttggttgctgatatttcagtcagaggatcagctagagctagagagaaggctgctttgctgatgaagaagatgatggatgctgacatggattcttatgtggatggaaaccccatgttttcccagtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

304

Amino Acids

32.58

Weight (kDa)

5.88

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AclWI	GGATC	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	2 cut(s)	46, 544
AgsI	TTSAA	4 cut(s)	229, 660, 676, 773
AjiI	CACGTC	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	9 cut(s)	83, 256, 328, 356, 462, 475, 710, 818, 824
AluI	AGCT	9 cut(s)	83, 256, 328, 356, 462, 475, 710, 818, 824
Alw21I	GWGCWC	1 cut(s)	554
Alw44I	GTGCAC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	820
AlwNI	CAGNNNCTG	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	375, 595
ApaLI	GTGCAC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	443, 707, 836
AspA2I	CCTAGG	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	428, 437, 565, 589
AsuHPI	GGTGA	5 cut(s)	77, 97, 124, 443, 572
AsuNHI	GCTAGC	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	4 cut(s)	428, 437, 565, 589
AvrII	CCTAGG	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	554
BaeI	ACNNNNGTAYC	2 cut(s)	656, 689
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	3 cut(s)	430, 719, 823
BccI	CCATC	6 cut(s)	110, 164, 227, 551, 853, 881
BfaI	CTAG	6 cut(s)	263, 329, 569, 593, 819, 825
BfmI	CTRYAG	1 cut(s)	346
BisI	GCNGC	3 cut(s)	444, 708, 837
BlnI	CCTAGG	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	3 cut(s)	445, 709, 838
Bme18I	GGWCC	4 cut(s)	428, 437, 565, 589
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	4 cut(s)	428, 437, 565, 589
BmiI	GGNNCC	4 cut(s)	154, 430, 485, 577
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	4 cut(s)	341, 737, 748, 853
BmtI	GCTAGC	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	901
BplI	GAGNNNNNCTC	2 cut(s)	745, 777
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	471
BsaJI	CCNNGG	5 cut(s)	93, 108, 433, 487, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 544
Bse1I	ACTGG	2 cut(s)	345, 907
BseDI	CCNNGG	5 cut(s)	93, 108, 433, 487, 592
BseGI	GGATG	7 cut(s)	156, 188, 219, 332, 752, 868, 892
BseLI	CCNNNNNNNGG	2 cut(s)	46, 544
BseMII	CTCAG	5 cut(s)	36, 462, 614, 633, 755
BseNI	ACTGG	2 cut(s)	345, 907
BseRI	GAGGAG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	3 cut(s)	430, 719, 823
BsgI	GTGCAG	2 cut(s)	481, 726
BshFI	GGCC	2 cut(s)	377, 597
BsiHKAI	GWGCWC	1 cut(s)	554
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	46, 544
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	377, 597
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	119, 554
Bsp143I	GATC	2 cut(s)	247, 812
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	487
BspANI	GGCC	2 cut(s)	377, 597
BspCNI	CTCAG	5 cut(s)	37, 463, 615, 634, 756
BspLI	GGNNCC	4 cut(s)	154, 430, 485, 577
BspMAI	CTGCAG	1 cut(s)	350
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	345, 907
BssECI	CCNNGG	5 cut(s)	93, 108, 433, 487, 592
BssMI	GATC	2 cut(s)	247, 812
BssT1I	CCWWGG	4 cut(s)	93, 108, 487, 592
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	3 cut(s)	90, 230, 588
BstC8I	GCNNGC	3 cut(s)	326, 330, 394
BstDEI	CTNAG	6 cut(s)	45, 458, 471, 623, 642, 764
BstDSI	CCRYGG	2 cut(s)	433, 487
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	7 cut(s)	156, 188, 219, 332, 752, 868, 892
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	2 cut(s)	250, 815
BstMBI	GATC	2 cut(s)	247, 812
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 170, 527, 693, 747
BstNSI	RCATGY	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	3 cut(s)	430, 719, 823
BsuRI	GGCC	2 cut(s)	377, 597
BtgI	CCRYGG	2 cut(s)	433, 487
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	7 cut(s)	156, 188, 219, 332, 752, 868, 892
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	4 cut(s)	338, 498, 513, 914
Cac8I	GCNNGC	3 cut(s)	326, 330, 394
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	428, 437, 565, 589
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	4 cut(s)	488, 688, 871, 898
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	6 cut(s)	45, 458, 471, 623, 642, 764
DpnI	GATC	2 cut(s)	249, 814
DpnII	GATC	2 cut(s)	247, 812
Eam1104I	CTCTTC	3 cut(s)	90, 230, 588
EarI	CTCTTC	3 cut(s)	90, 230, 588
Eco130I	CCWWGG	4 cut(s)	93, 108, 487, 592
Eco147I	AGGCCT	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	4 cut(s)	428, 437, 565, 589
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoO109I	RGGNCCY	2 cut(s)	428, 565
EcoT14I	CCWWGG	4 cut(s)	93, 108, 487, 592
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	4 cut(s)	93, 108, 487, 592
FaeI	CATG	4 cut(s)	491, 691, 874, 901
FaiI	YATR	9 cut(s)	272, 299, 359, 422, 489, 689, 872, 882, 899
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	487, 687, 870, 897
Fnu4HI	GCNGC	3 cut(s)	444, 708, 837
FokI	GGATG	7 cut(s)	143, 175, 206, 319, 759, 875, 899
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	444, 708, 837
FspBI	CTAG	6 cut(s)	263, 329, 569, 593, 819, 825
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	3 cut(s)	444, 708, 837
HaeIII	GGCC	2 cut(s)	377, 597
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	4 cut(s)	491, 691, 874, 901
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	6 cut(s)	16, 59, 205, 241, 317, 875
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	5 cut(s)	77, 97, 124, 443, 572
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	9 cut(s)	15, 46, 58, 90, 204, 307, 386, 765, 809
Hpy188III	TCNNGA	3 cut(s)	20, 245, 773
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	5 cut(s)	143, 509, 611, 695, 826
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	140, 348, 498, 552, 605, 687, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 170, 527, 693, 747
HpyF3I	CTNAG	6 cut(s)	45, 458, 471, 623, 642, 764
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	491, 691, 874, 901
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	247, 812
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	3 cut(s)	430, 719, 823
LweI	GCATC	4 cut(s)	341, 737, 748, 853
MaeI	CTAG	6 cut(s)	263, 329, 569, 593, 819, 825
MaeII	ACGT	1 cut(s)	35
MalI	GATC	2 cut(s)	249, 814
MboI	GATC	2 cut(s)	247, 812
MboII	GAAGA	6 cut(s)	77, 177, 217, 575, 862, 865
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	119, 554
MluCI	AATT	2 cut(s)	300, 404
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	1 cut(s)	573
MunI	CAATTG	1 cut(s)	404
MwoI	GCNNNNNNNGC	5 cut(s)	161, 170, 527, 693, 747
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	247, 812
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	491, 691, 874, 901
NlaIV	GGNNCC	4 cut(s)	154, 430, 485, 577
NspI	RCATGY	1 cut(s)	691
OliI	CACNNNNGTG	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	90
PfeI	GAWTC	5 cut(s)	16, 205, 241, 317, 875
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	445, 709, 838
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	2 cut(s)	428, 565
Psp5II	RGGWCCY	2 cut(s)	428, 565
PspN4I	GGNNCC	4 cut(s)	154, 430, 485, 577
PspPI	GGNCC	4 cut(s)	428, 437, 565, 589
PspPPI	RGGWCCY	2 cut(s)	428, 565
PstI	CTGCAG	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	90
SatI	GCNGC	3 cut(s)	444, 708, 837
Sau3AI	GATC	2 cut(s)	247, 812
Sau96I	GGNCC	4 cut(s)	428, 437, 565, 589
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	119, 554
SfaNI	GCATC	4 cut(s)	341, 737, 748, 853
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	4 cut(s)	428, 437, 565, 589
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	300, 404
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	6 cut(s)	263, 329, 569, 593, 819, 825
StuI	AGGCCT	1 cut(s)	597
StyI	CCWWGG	4 cut(s)	93, 108, 487, 592
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	363, 782
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	300, 404
TfiI	GAWTC	5 cut(s)	16, 205, 241, 317, 875
TscAI	CASTG	4 cut(s)	345, 505, 513, 914
TseI	GCWGC	3 cut(s)	443, 707, 836
TspDTI	ATGAA	3 cut(s)	177, 630, 863
TspRI	CASTG	4 cut(s)	345, 505, 513, 914
Van91I	CCANNNNNTGG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	550
VpaK11BI	GGWCC	4 cut(s)	428, 437, 565, 589
XagI	CCTNNNNNAGG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	691
XmaJI	CCTAGG	1 cut(s)	592
XspI	CTAG	6 cut(s)	263, 329, 569, 593, 819, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.