Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Forward (+)

8688325 .. 8689314

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1120900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCAAGGCTTCAACCCTGAAGACTGCTTAAGCATGCCTGCCCCTGCTCTGAAACCAGTACTCCCAACAATGTCAGCTCCTCGGGTTCGCGAGGCAATCAGGCAGTATCTCTCGGAGGCTCAGTCGGATTCTCACGAAGTGCAGCAGAAAGCTCTCCAGACTTTAGTTTCCATCACCAAGGTGAGTCCCCAAAACAGGAGCTTGGTTTCACAGACAGAAGGAGCCATCCCCGCTTTACTTGCCCTCTCGAAATCTTCCTCCGACAGCATTCAGGTTCTCTCGCTGTCTGTCCTCTTCAACCTGTCCCTGAATCCGGATCTGAAGCAATCTCTTGCGGATATTAAAACCCTTAAACATCTGAATTCGATAATTGCCTCTTTGACCTCCGCGGAGTCCGGCAAGGTAGCTTCCTCTCTGGTTTGCAGTTTGGCAATGCTTGACAAGAACAAGGCCAAGTTTGGCGTAGCAGGCACCATCCAGTTACTAGTCAAGGTCATTTCCGGCCCTCGCGGTCCTGCCACCCATCACCTCCTCAGCTCTCTAGCTGAGCTTGTTCGGTTTCACGGGAACTGCACTTTGGCAGTGAGAGAAGGAGCTGTTCAAGCGCTCATCCAAGTGGTGGGGAGCAGTGACAGCGAGGATCTAGCCGGAACTTCTCTCCAGGTTCTTGGCCTTCTTGCTAGGTTTGATGAAGGACTGAATGCTTTGAGCAAAACCGACCAGATTGTGGGCTCAATGGTAGAAGTGTTAAAAGGGAGGTGCATGCTGAGTAAGGAAGGCGCGGCTGAAATCCTGCTGCTCCTGTTTGATGAAAGTGAGGGCTGCGTGAGAGACGCTTTGAGGCTGCCGAACTTCTCAACTTTGGTAGCTGATATTTCGGTCAGAGGATCACCGAGAGCCCGAGAGAAGGCGGCGTTGCTGATGAAGAAGATCATGGAGGATGACTTGGATTCTTATGTTGATGGAAACCCCATGTTTTCTCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

330

Amino Acids

35.18

Weight (kDa)

6.24

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	30 - 311	1.5e-13	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	32 - 178	2e-08	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	2 cut(s)	619, 727
AccII	CGCG	4 cut(s)	90, 389, 510, 782
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	7 cut(s)	231, 335, 387, 389, 510, 782, 911
AclWI	GGATC	3 cut(s)	324, 648, 895
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	39, 341
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	60
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	5 cut(s)	195, 313, 619, 727, 907
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	13, 298, 602
AhlI	ACTAGT	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	660
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	9 cut(s)	77, 152, 201, 407, 537, 545, 550, 596, 869
AluI	AGCT	9 cut(s)	77, 152, 201, 407, 537, 545, 550, 596, 869
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	3 cut(s)	324, 648, 895
Ama87I	CYCGRG	2 cut(s)	81, 900
Aor13HI	TCCGGA	1 cut(s)	313
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	3 cut(s)	450, 502, 670
ApeKI	GCWGC	4 cut(s)	142, 796, 822, 844
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	2 cut(s)	607, 782
AspS9I	GGNCC	2 cut(s)	503, 512
AsuHPI	GGTGA	4 cut(s)	166, 193, 518, 882
AvaI	CYCGRG	2 cut(s)	81, 900
AvaII	GGWCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	734, 901
BbsI	GAAGAC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	154, 783, 809, 831
BccI	CCATC	5 cut(s)	179, 233, 482, 531, 956
BciT130I	CCWGG	1 cut(s)	662
BcoDI	GTCTC	1 cut(s)	825
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	4 cut(s)	485, 542, 644, 681
BfoI	RGCGCY	1 cut(s)	608
BfrI	CTTAAG	1 cut(s)	28
BisI	GCNGC	6 cut(s)	143, 783, 797, 823, 845, 912
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	6 cut(s)	144, 784, 798, 824, 846, 913
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	662
Bme18I	GGWCC	1 cut(s)	512
BmeT110I	CYCGRG	2 cut(s)	81, 900
BmgT120I	GGNCC	2 cut(s)	503, 512
BmiI	GGNNCC	2 cut(s)	223, 472
BmrFI	CCNGG	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	140, 644
Bpu10I	CCTNAGC	1 cut(s)	533
Bpu1102I	GCTNAGC	1 cut(s)	546
BsaJI	CCNNGG	3 cut(s)	80, 177, 387
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 313, 619, 727, 907
Bse1I	ACTGG	2 cut(s)	56, 478
Bse3DI	GCAATG	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	3 cut(s)	80, 177, 387
BseGI	GGATG	4 cut(s)	225, 474, 609, 946
BseLI	CCNNNNNNNGG	5 cut(s)	195, 313, 619, 727, 907
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	4 cut(s)	134, 537, 547, 758
BseNI	ACTGG	2 cut(s)	56, 478
BseRI	GAGGAG	2 cut(s)	69, 521
BseXI	GCAGC	4 cut(s)	154, 783, 809, 831
BsgI	GTGCAG	2 cut(s)	161, 556
Bsh1236I	CGCG	4 cut(s)	90, 389, 510, 782
BshFI	GGCC	3 cut(s)	452, 504, 672
BshNI	GGYRCC	1 cut(s)	470
BsiHKCI	CYCGRG	2 cut(s)	81, 900
BsiSI	CCGG	4 cut(s)	314, 396, 501, 648
BslFI	GGGAC	2 cut(s)	171, 289
BslI	CCNNNNNNNGG	5 cut(s)	195, 313, 619, 727, 907
BsmAI	GTCTC	1 cut(s)	825
BsmBI	CGTCTC	1 cut(s)	825
BsmFI	GGGAC	2 cut(s)	171, 289
BsmI	GAATGC	2 cut(s)	267, 706
BsnI	GGCC	3 cut(s)	452, 504, 672
BsoBI	CYCGRG	2 cut(s)	81, 900
Bsp1286I	GDGCHC	2 cut(s)	734, 901
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	316, 640, 887, 930
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp68I	TCGCGA	1 cut(s)	90
BspACI	CCGC	7 cut(s)	231, 335, 387, 389, 510, 782, 911
BspANI	GGCC	3 cut(s)	452, 504, 672
BspCNI	CTCAG	4 cut(s)	133, 538, 546, 759
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	4 cut(s)	90, 389, 510, 782
BspLI	GGNNCC	2 cut(s)	223, 472
BspPI	GGATC	3 cut(s)	324, 648, 895
BspT107I	GGYRCC	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	56, 478
BssECI	CCNNGG	3 cut(s)	80, 177, 387
BssMI	GATC	4 cut(s)	316, 640, 887, 930
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	662
Bst6I	CTCTTC	1 cut(s)	299
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	35, 39, 469, 764
BstDEI	CTNAG	5 cut(s)	120, 533, 546, 767, 981
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	4 cut(s)	225, 474, 609, 946
BstFNI	CGCG	4 cut(s)	90, 389, 510, 782
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	607, 782
BstKTI	GATC	4 cut(s)	319, 643, 890, 933
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	4 cut(s)	316, 640, 887, 930
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 468, 602, 633
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	2 cut(s)	37, 766
BstSCI	CCNGG	1 cut(s)	660
BstUI	CGCG	4 cut(s)	90, 389, 510, 782
BstV1I	GCAGC	4 cut(s)	154, 783, 809, 831
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	316, 640
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	2 cut(s)	316, 640
BsuRI	GGCC	3 cut(s)	452, 504, 672
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	4 cut(s)	225, 474, 609, 946
BtsI	GCAGTG	2 cut(s)	588, 634
BtsIMutI	CAGTG	3 cut(s)	588, 634, 989
BtuMI	TCGCGA	1 cut(s)	90
Cac8I	GCNNGC	4 cut(s)	35, 39, 469, 764
CfoI	GCGC	2 cut(s)	607, 782
Cfr13I	GGNCC	2 cut(s)	503, 512
Cfr42I	CCGCGG	1 cut(s)	390
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	4 cut(s)	34, 763, 934, 973
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	5 cut(s)	120, 533, 546, 767, 981
DpnI	GATC	4 cut(s)	318, 642, 889, 932
DpnII	GATC	4 cut(s)	316, 640, 887, 930
DraIII	CACNNNGTG	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	734, 901
Eco47I	GGWCC	1 cut(s)	512
Eco47III	AGCGCT	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	39, 341
Eco88I	CYCGRG	2 cut(s)	81, 900
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	2 cut(s)	734, 901
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	4 cut(s)	37, 766, 937, 976
FaiI	YATR	5 cut(s)	35, 764, 935, 957, 974
FaqI	GGGAC	2 cut(s)	171, 289
FatI	CATG	4 cut(s)	33, 762, 933, 972
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	6 cut(s)	143, 783, 797, 823, 845, 912
FokI	GGATG	4 cut(s)	212, 461, 596, 953
FriOI	GRGCYC	2 cut(s)	734, 901
Fsp4HI	GCNGC	6 cut(s)	143, 783, 797, 823, 845, 912
FspBI	CTAG	4 cut(s)	485, 542, 644, 681
GlaI	GCGC	2 cut(s)	606, 781
GluI	GCNGC	6 cut(s)	143, 783, 797, 823, 845, 912
GsuI	CTGGAG	2 cut(s)	140, 644
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	3 cut(s)	452, 504, 672
HapII	CCGG	4 cut(s)	314, 396, 501, 648
HgaI	GACGC	1 cut(s)	842
HhaI	GCGC	2 cut(s)	607, 782
Hin1II	CATG	4 cut(s)	37, 766, 937, 976
Hin6I	GCGC	2 cut(s)	605, 780
HinP1I	GCGC	2 cut(s)	605, 780
HinfI	GANTC	5 cut(s)	128, 184, 310, 392, 950
HpaII	CCGG	4 cut(s)	314, 396, 501, 648
HphI	GGTGA	4 cut(s)	166, 193, 518, 882
Hpy188I	TCNGA	7 cut(s)	51, 115, 127, 262, 321, 360, 884
Hpy188III	TCNNGA	5 cut(s)	89, 134, 157, 247, 314
HpyAV	CCTTC	6 cut(s)	212, 584, 683, 686, 770, 901
HpyCH4V	TGCA	5 cut(s)	4, 142, 423, 573, 762
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 468, 602, 633
HpyF3I	CTNAG	5 cut(s)	120, 533, 546, 767, 981
Hsp92II	CATG	4 cut(s)	37, 766, 937, 976
HspAI	GCGC	2 cut(s)	605, 780
Kpn2I	TCCGGA	1 cut(s)	313
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	316, 640, 887, 930
LmnI	GCTCC	6 cut(s)	82, 198, 221, 593, 624, 804
Lsp1109I	GCAGC	4 cut(s)	154, 783, 809, 831
MaeI	CTAG	4 cut(s)	485, 542, 644, 681
MaeIII	GTNAC	2 cut(s)	480, 629
MalI	GATC	4 cut(s)	318, 642, 889, 932
MboI	GATC	4 cut(s)	316, 640, 887, 930
MboII	GAAGA	5 cut(s)	32, 246, 286, 937, 940
MflI	RGATCY	2 cut(s)	316, 640
MhlI	GDGCHC	2 cut(s)	734, 901
MluCI	AATT	2 cut(s)	361, 369
MlyI	GAGTC	2 cut(s)	193, 401
MmeI	TCCRAC	2 cut(s)	105, 285
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	4 cut(s)	29, 342, 351, 749
MslI	CAYNNNNRTG	2 cut(s)	179, 614
MspA1I	CMGCKG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	4 cut(s)	314, 396, 501, 648
MspR9I	CCNGG	1 cut(s)	662
Mva1269I	GAATGC	2 cut(s)	267, 706
MvaI	CCWGG	1 cut(s)	662
MvnI	CGCG	4 cut(s)	90, 389, 510, 782
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 468, 602, 633
NdeII	GATC	4 cut(s)	316, 640, 887, 930
NlaIII	CATG	4 cut(s)	37, 766, 937, 976
NlaIV	GGNNCC	2 cut(s)	223, 472
NmuCI	GTSAC	1 cut(s)	629
NruI	TCGCGA	1 cut(s)	90
NspI	RCATGY	2 cut(s)	37, 766
OliI	CACNNNNGTG	1 cut(s)	179
PaeI	GCATGC	2 cut(s)	37, 766
PctI	GAATGC	2 cut(s)	267, 706
PfeI	GAWTC	3 cut(s)	128, 310, 950
PflMI	CCANNNNNTGG	2 cut(s)	619, 727
PkrI	GCNGC	6 cut(s)	144, 784, 798, 824, 846, 913
PleI	GAGTC	2 cut(s)	192, 400
PpsI	GAGTC	2 cut(s)	192, 400
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	223, 472
PspPI	GGNCC	2 cut(s)	503, 512
PsuI	RGATCY	2 cut(s)	316, 640
RruI	TCGCGA	1 cut(s)	90
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	179, 614
SacII	CCGCGG	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	29, 342, 351, 749
SatI	GCNGC	6 cut(s)	143, 783, 797, 823, 845, 912
Sau3AI	GATC	4 cut(s)	316, 640, 887, 930
Sau96I	GGNCC	2 cut(s)	503, 512
ScaI	AGTACT	1 cut(s)	60
SchI	GAGTC	2 cut(s)	193, 401
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	2 cut(s)	734, 901
Sfr303I	CCGCGG	1 cut(s)	390
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	2 cut(s)	179, 614
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SpeI	ACTAGT	1 cut(s)	484
SphI	GCATGC	2 cut(s)	37, 766
Sse9I	AATT	2 cut(s)	361, 369
SsiI	CCGC	7 cut(s)	231, 335, 387, 389, 510, 782, 911
SspMI	CTAG	4 cut(s)	485, 542, 644, 681
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	177
TaqI	TCGA	2 cut(s)	248, 365
TaqII	GACCGA	1 cut(s)	868
TasI	AATT	2 cut(s)	361, 369
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	2 cut(s)	785, 914
TfiI	GAWTC	3 cut(s)	128, 310, 950
Tru1I	TTAA	4 cut(s)	29, 342, 351, 749
Tru9I	TTAA	4 cut(s)	29, 342, 351, 749
TscAI	CASTG	3 cut(s)	588, 634, 989
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	4 cut(s)	142, 796, 822, 844
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	3 cut(s)	705, 825, 938
TspRI	CASTG	3 cut(s)	588, 634, 989
Van91I	CCANNNNNTGG	2 cut(s)	619, 727
Vha464I	CTTAAG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	37, 766
XspI	CTAG	4 cut(s)	485, 542, 644, 681
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.