Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015552

Physical Location & Seq

Genomic Coordinates Reverse (-)

58492524 .. 58493471

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG393100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAACCCCTCCGAAACCAGCGCCGGCAGCAATGTCAGCAGTTCGGATTCGTGAGGCTATTAGGACGTGCCTCTCTGAGGCTCAGTCAGACTCGGGTGAAGTTCAGCAGAAAGCTATTCAGACCTTGGTTTCTATCACCAAGGTGAGCCCCCAAAACAGAAACCTACTTGCACAAACAGAAGGAGCCATCCCTGCCTTACTCGCCCTCTCAAAATCTTCATCCAGCACCACTCAGATTCTCGCATTGTCCATCCTCTTCAACCTTTCCCTGAATCTTGATCTAAAGCTATCACTAGCAGATATAGAAACCATTTACCACCTCAATACCATAATTTCCGACCCAACAGAATCTGGCAAGCTAGCATCCTCACTGGTCTGCAGTTTAGCTATGCTCGACAAGAACAAGGCCAAGTTCGGAGTAGCAGGCACAATCCAATTGCTTGTCAACGCCATATCAGGTCCCCGTGGTCCTGCTGCTCATCACCTCCTTAGCTCTCTCGCTGAGCTTGTTCGGTTCCATGGGAACTGCACTGTGGCAGTGAGAGAAGGTGCTGTTCCTGCGCTTCTCCAAGTGGTGGAGAGCACCGATGGTGAGGACCTAGCTGGAACCTCTCTTCTGGTCCTAGGCCTCCTTGCAAGGTTTGATGAAGGGTTGAGTGCTTTGAGCAAAACTGAGCAGATTGTGAGTTCAATGGTACAAGTGTTCAAAGGGAGGTGCATGTTGAGCAAGGAAGGTGCAGCTGAACTTCTGCTTCTCCTCTTTGACGAAAGCGAGGGATGCGTGAGAGATGCTCTGAGGCTTCAAGATTTTTCGAGTTTGGTTGCTGATATTTCAGTCAGAGGATCAGCTAGAGCTAGAGAGAAGGCTGCTTTGCTGATGAAGAAGATGATGGATGCTGACATGGATTCTTATGTGGATGGAAACCCCATGTTTTCCCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm_2

Protein Analysis

315

Amino Acids

33.51

Weight (kDa)

5.67

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	19 - 163	7.3e-08	ARMC5
ARM_PUB	PF25598	20 - 306	5.7e-10	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29591
malus_domestica	MD08G1145200.v1.1 MD15G1120900.v1.1
prunus_persica	Prupe.1G473500_v2.0.a1
pyrus_communis	pycom08g12240 pycom15g10910
rosa_chinensis	RchiOBHm_Chr6g0298581
rosa_laevigata	RLG00000011502
rosa_multiflora	Rmu_sc0004500.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169520
rosa_rugosa	Rorug06G0281100
rosa_samantha	Rh6AG392800 Rh6BG400500 Rh6CG406400 Rh6DG393100
rosa_wichuraiana	Rw6G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AclWI	GGATC	1 cut(s)	853
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	2 cut(s)	79, 577
AgsI	TTSAA	4 cut(s)	262, 693, 709, 806
AjiI	CACGTC	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	143
Alw21I	GWGCWC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	853
AlwNI	CAGNNNCTG	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	2 cut(s)	408, 628
ApeKI	GCWGC	4 cut(s)	29, 476, 740, 869
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	25, 565
AspS9I	GGNCC	4 cut(s)	461, 470, 598, 622
AsuHPI	GGTGA	5 cut(s)	110, 130, 157, 476, 605
AsuNHI	GCTAGC	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	4 cut(s)	461, 470, 598, 622
AvrII	CCTAGG	1 cut(s)	625
BaeI	ACNNNNGTAYC	2 cut(s)	689, 722
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	4 cut(s)	41, 463, 752, 856
BccI	CCATC	5 cut(s)	197, 260, 584, 886, 914
BfaI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	4 cut(s)	30, 477, 741, 870
BlnI	CCTAGG	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	4 cut(s)	31, 478, 742, 871
Bme18I	GGWCC	4 cut(s)	461, 470, 598, 622
BmeT110I	CYCGRG	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	4 cut(s)	461, 470, 598, 622
BmiI	GGNNCC	4 cut(s)	187, 463, 518, 610
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	4 cut(s)	374, 770, 781, 886
BmtI	GCTAGC	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	934
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
Bpu10I	CCTNAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaJI	CCNNGG	5 cut(s)	126, 141, 466, 520, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 577
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	378, 940
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	5 cut(s)	126, 141, 466, 520, 625
BseGI	GGATG	7 cut(s)	189, 221, 252, 365, 785, 901, 925
BseLI	CCNNNNNNNGG	2 cut(s)	79, 577
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	6 cut(s)	69, 98, 248, 495, 666, 788
BseNI	ACTGG	2 cut(s)	378, 940
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	41, 463, 752, 856
BsgI	GTGCAG	2 cut(s)	514, 759
BshFI	GGCC	2 cut(s)	410, 630
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	79, 577
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	410, 630
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	152, 587
Bsp143I	GATC	2 cut(s)	280, 845
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	1 cut(s)	520
BspANI	GGCC	2 cut(s)	410, 630
BspCNI	CTCAG	6 cut(s)	70, 97, 247, 496, 667, 789
BspLI	GGNNCC	4 cut(s)	187, 463, 518, 610
BspMAI	CTGCAG	1 cut(s)	383
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	378, 940
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	5 cut(s)	126, 141, 466, 520, 625
BssMI	GATC	2 cut(s)	280, 845
BssT1I	CCWWGG	4 cut(s)	126, 141, 520, 625
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	2 cut(s)	263, 621
BstC8I	GCNNGC	4 cut(s)	27, 359, 363, 427
BstDEI	CTNAG	7 cut(s)	78, 84, 234, 491, 504, 675, 797
BstDSI	CCRYGG	2 cut(s)	466, 520
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	7 cut(s)	189, 221, 252, 365, 785, 901, 925
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 565
BstKTI	GATC	2 cut(s)	283, 848
BstMBI	GATC	2 cut(s)	280, 845
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 38, 194, 203, 560, 726, 780
BstNSI	RCATGY	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	4 cut(s)	41, 463, 752, 856
BsuRI	GGCC	2 cut(s)	410, 630
BtgI	CCRYGG	2 cut(s)	466, 520
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	7 cut(s)	189, 221, 252, 365, 785, 901, 925
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	4 cut(s)	371, 531, 546, 947
Cac8I	GCNNGC	4 cut(s)	27, 359, 363, 427
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	2 cut(s)	25, 565
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	461, 470, 598, 622
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	4 cut(s)	521, 721, 904, 931
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	7 cut(s)	78, 84, 234, 491, 504, 675, 797
DpnI	GATC	2 cut(s)	282, 847
DpnII	GATC	2 cut(s)	280, 845
Eam1104I	CTCTTC	2 cut(s)	263, 621
EarI	CTCTTC	2 cut(s)	263, 621
Eco130I	CCWWGG	4 cut(s)	126, 141, 520, 625
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	4 cut(s)	461, 470, 598, 622
Eco88I	CYCGRG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	461, 598
EcoT14I	CCWWGG	4 cut(s)	126, 141, 520, 625
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	4 cut(s)	126, 141, 520, 625
FaeI	CATG	4 cut(s)	524, 724, 907, 934
FaiI	YATR	9 cut(s)	305, 332, 392, 455, 522, 722, 905, 915, 932
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	4 cut(s)	520, 720, 903, 930
Fnu4HI	GCNGC	4 cut(s)	30, 477, 741, 870
FokI	GGATG	7 cut(s)	176, 208, 239, 352, 792, 908, 932
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	30, 477, 741, 870
FspBI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
GlaI	GCGC	2 cut(s)	24, 564
GluI	GCNGC	4 cut(s)	30, 477, 741, 870
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	410, 630
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	2 cut(s)	25, 565
Hin1II	CATG	4 cut(s)	524, 724, 907, 934
Hin6I	GCGC	2 cut(s)	23, 563
HinP1I	GCGC	2 cut(s)	23, 563
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	6 cut(s)	49, 92, 238, 274, 350, 908
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	5 cut(s)	110, 130, 157, 476, 605
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188III	TCNNGA	3 cut(s)	53, 278, 806
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	5 cut(s)	176, 542, 644, 728, 859
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	173, 381, 531, 638, 720, 740
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 38, 194, 203, 560, 726, 780
HpyF3I	CTNAG	7 cut(s)	78, 84, 234, 491, 504, 675, 797
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	524, 724, 907, 934
HspAI	GCGC	2 cut(s)	23, 563
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	280, 845
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	4 cut(s)	41, 463, 752, 856
LweI	GCATC	4 cut(s)	374, 770, 781, 886
MaeI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
MaeII	ACGT	1 cut(s)	68
MalI	GATC	2 cut(s)	282, 847
MboI	GATC	2 cut(s)	280, 845
MboII	GAAGA	5 cut(s)	210, 250, 608, 895, 898
MfeI	CAATTG	1 cut(s)	437
MhlI	GDGCHC	2 cut(s)	152, 587
MluCI	AATT	2 cut(s)	333, 437
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	363
MroNI	GCCGGC	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	437
MwoI	GCNNNNNNNGC	7 cut(s)	29, 38, 194, 203, 560, 726, 780
NaeI	GCCGGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	2 cut(s)	280, 845
NgoMIV	GCCGGC	1 cut(s)	25
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	4 cut(s)	524, 724, 907, 934
NlaIV	GGNNCC	4 cut(s)	187, 463, 518, 610
NspI	RCATGY	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	630
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	49, 238, 274, 350, 908
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	31, 478, 742, 871
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	2 cut(s)	461, 598
Psp5II	RGGWCCY	2 cut(s)	461, 598
PspN4I	GGNNCC	4 cut(s)	187, 463, 518, 610
PspPI	GGNCC	4 cut(s)	461, 470, 598, 622
PspPPI	RGGWCCY	2 cut(s)	461, 598
PstI	CTGCAG	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	4 cut(s)	30, 477, 741, 870
Sau3AI	GATC	2 cut(s)	280, 845
Sau96I	GGNCC	4 cut(s)	461, 470, 598, 622
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	152, 587
SfaNI	GCATC	4 cut(s)	374, 770, 781, 886
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	4 cut(s)	461, 470, 598, 622
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	333, 437
SseBI	AGGCCT	1 cut(s)	630
SspMI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858
StuI	AGGCCT	1 cut(s)	630
StyI	CCWWGG	4 cut(s)	126, 141, 520, 625
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	396, 815
TasI	AATT	2 cut(s)	333, 437
TfiI	GAWTC	5 cut(s)	49, 238, 274, 350, 908
TscAI	CASTG	4 cut(s)	378, 538, 546, 947
TseI	GCWGC	4 cut(s)	29, 476, 740, 869
TspDTI	ATGAA	3 cut(s)	210, 663, 896
TspRI	CASTG	4 cut(s)	378, 538, 546, 947
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	4 cut(s)	461, 470, 598, 622
XagI	CCTNNNNNAGG	1 cut(s)	77
XceI	RCATGY	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	625
XspI	CTAG	6 cut(s)	296, 362, 602, 626, 852, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.