Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Reverse (-)

23918059 .. 23919405

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGAAGAAGTCCTTGTTGTGTAAAGGAGGGACTGAACCGAGGAGCTTGGACTGCTCTCGAGGATCAAATTCTCATAGACTACATCAACACCCATGGAGAAGGAAAATGGAGAAGGATTCCCAAAGAAGCTGGTCTAAAAAGATGCGGAAAGAGTTGCAGACTGAGGTGGCTGAACTATCTGAGACCTGGTATCAAAAGAGGTAATATAACTCAGGAAGAAGAGGATCTCATCATTAGGCTCCACAAGCTTCTGGGCAACAGATGGTCACTAATAGCCGGGAGAATACCAGGACGAACAGACAATGAAATCAAGAACTACTGGAACACAACGTTAGGAAAGAAGGTTAATAACGGCCAGGATGATGTTGTTGAGAATAAGAATGAGAAGAAGAAAAACAAAACCAAATCGTTGACAAGGGTGCTGGACTCAATTGCTGCCGTCCGTACAAAGGCAATGAGATGCAACAGCGTAGCAGTCACCTCGCACTTACAACCGCTCCCATTAGTCGAAACTGTTCATGGTGTTGCTTTGGACGAGGGCATAAAGAACTCCGAGGAAGACAACGCCACCTCTACTACTACCACAACCACTACTACTACTTCCACTTCAGATGACTTTGTGTTAGATTTTGATGTGGGGAAGCTGTTTAATGTGTCGGAAAATATTCCGGATAGCTCCGACGACTACTGGGAACTATGTCAGTTTGGTGGCGGTAACAAACGCTTGGAGGAGGAGCAATACGGTGGCGATATCAATAATGGTGGTGGTGGCTCAAACAATTACAAGTTGTCCTCATCAGCTAGCTGTGAACCAACCTTGTTCTCGGAGGAAATGCTCAAGGAATGGATGAAAGAGGACTGTTTCCATCATCTTCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.99

Weight (kDa)

6.34

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	6.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 120	1.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	3 cut(s)	147, 497, 714
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	2 cut(s)	72, 234
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	878
AjnI	CCWGG	3 cut(s)	187, 289, 357
AluBI	AGCT	7 cut(s)	47, 131, 250, 646, 678, 803, 807
AluI	AGCT	7 cut(s)	47, 131, 250, 646, 678, 803, 807
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	72, 234
Ama87I	CYCGRG	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	2 cut(s)	516, 666
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	472
AsuNHI	GCTAGC	1 cut(s)	803
AvaI	CYCGRG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	258, 876
BceAI	ACGGC	2 cut(s)	370, 425
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciT130I	CCWGG	3 cut(s)	189, 291, 359
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	804
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	4 cut(s)	189, 280, 291, 359
BmeT110I	CYCGRG	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	4 cut(s)	189, 280, 291, 359
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	2 cut(s)	134, 452
BmtI	GCTAGC	1 cut(s)	807
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	40, 94, 555
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	326, 695
Bse3DI	GCAATG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	3 cut(s)	189, 291, 359
BseDI	CCNNGG	3 cut(s)	40, 94, 555
BseGI	GGATG	2 cut(s)	367, 855
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	155, 173, 227
BseNI	ACTGG	2 cut(s)	326, 695
BseRI	GAGGAG	3 cut(s)	57, 746, 749
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	279, 671
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	64, 226
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	147, 497, 714
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	3 cut(s)	156, 174, 226
BspEI	TCCGGA	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	242
BspOI	GCTAGC	1 cut(s)	807
BspPI	GGATC	2 cut(s)	72, 234
BspTNI	GGTCTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	326, 695
BssECI	CCNNGG	3 cut(s)	40, 94, 555
BssMI	GATC	2 cut(s)	64, 226
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	3 cut(s)	189, 291, 359
Bst4CI	ACNGT	3 cut(s)	517, 746, 863
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	805
BstDEI	CTNAG	3 cut(s)	164, 182, 213
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	367, 855
BstKTI	GATC	2 cut(s)	67, 229
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	64, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 247
BstNI	CCWGG	3 cut(s)	189, 291, 359
BstSCI	CCNGG	4 cut(s)	187, 278, 289, 357
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	367, 855
Cac8I	GCNNGC	1 cut(s)	805
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	447
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	2 cut(s)	95, 521
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	3 cut(s)	164, 182, 213
DpnI	GATC	2 cut(s)	66, 228
DpnII	GATC	2 cut(s)	64, 226
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	187, 289, 357
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	98, 524
FaiI	YATR	6 cut(s)	77, 96, 209, 522, 545, 700
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	2 cut(s)	94, 520
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	374, 862
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	804
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	279, 671
Hin1II	CATG	2 cut(s)	98, 524
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	118, 428
HpaII	CCGG	2 cut(s)	279, 671
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	414, 812
Hpy188I	TCNGA	6 cut(s)	183, 556, 613, 661, 682, 829
Hpy188III	TCNNGA	4 cut(s)	59, 215, 313, 671
Hpy8I	GTNNAC	2 cut(s)	414, 812
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	3 cut(s)	95, 108, 337
HpyCH4III	ACNGT	3 cut(s)	517, 746, 863
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	159, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 247
HpyF3I	CTNAG	3 cut(s)	164, 182, 213
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	98, 524
Kpn2I	TCCGGA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	64, 226
LmnI	GCTCC	5 cut(s)	44, 246, 504, 683, 736
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	2 cut(s)	134, 452
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	1 cut(s)	804
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	267, 478, 716
MalI	GATC	2 cut(s)	66, 228
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	2 cut(s)	64, 226
MboII	GAAGA	7 cut(s)	18, 230, 233, 400, 403, 572, 866
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	3 cut(s)	69, 432, 781
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	639, 705
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	2 cut(s)	516, 666
MseI	TTAA	2 cut(s)	348, 651
MspI	CCGG	2 cut(s)	279, 671
MspR9I	CCNGG	4 cut(s)	189, 280, 291, 359
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	3 cut(s)	189, 291, 359
MwoI	GCNNNNNNNGC	2 cut(s)	53, 247
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	64, 226
NheI	GCTAGC	1 cut(s)	803
NlaIII	CATG	2 cut(s)	98, 524
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	267, 478
PaeR7I	CTCGAG	1 cut(s)	59
PdmI	GAANNNNTTC	2 cut(s)	516, 666
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	187, 289, 357
PspGI	CCWGG	3 cut(s)	187, 289, 357
PspN4I	GGNNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	348, 651
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	64, 226
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	4 cut(s)	189, 280, 291, 359
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	134, 452
Sfr274I	CTCGAG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	59, 839
SmoI	CTYRAG	2 cut(s)	59, 839
Sse9I	AATT	3 cut(s)	69, 432, 781
SsiI	CCGC	3 cut(s)	147, 497, 714
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	804
StyD4I	CCNGG	4 cut(s)	187, 278, 289, 357
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	3 cut(s)	517, 746, 863
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	60, 510
TasI	AATT	3 cut(s)	69, 432, 781
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	348, 651
Tru9I	TTAA	2 cut(s)	348, 651
TseFI	GTSAC	2 cut(s)	267, 478
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	2 cut(s)	267, 478
TspDTI	ATGAA	3 cut(s)	321, 509, 866
TspGWI	ACGGA	1 cut(s)	434
XapI	RAATTY	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	2 cut(s)	516, 666
XspI	CTAG	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.