Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Reverse (-)

35635408 .. 35636985

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGAAGAACTCCTTGTTGCTCTAAGGTAGGACTGAACAGAGGAGCTTGGACTGCTCTTGAGGACCAAACTCTCACAGATTACATCAGAACCCATGGAGAAGGAAAATGGAGAAAGATCCCAAAGGAAGCTGGTCTCAAGAGATGTGGAAAGAGCTGCAGACTGAGGTGGCTGAATTATCTTAGACCTGATATCAAAAGGGGAAATATAACTCAGGAGGAAGAGGATCTCATCATTAGGCTACACAAGCTATTAGGCAACAGATGGTCACTGATAGCAGGGAGAATCCCAGGGCGAACAGACAATGAGATCAAAAACTACTGGAACACAACCTTAGGGAAGAAGGTGAACTGTACGGATCAACAAACAAAGCAATCCTCTGGTGCTGTTAACGACAACACGAAGAAGAAGAGAAACAAGAGCACCAAGTTACCAACGTCCACAGATAAAACTCAACCGTCGACCAACATTGCAGTCCGTACAAAGGCATTAAGATTCAACAAGGTTCTTGTCACCCCACACGCACAACAAGAAGCCATCTTTCCTCACCACGCCGATGGAAATCACGGGGACTTGGTGGCGAAGAAGAAGGCGGCTGCTGCCAACTACTACAGCTCTGAACAAGAAGACACGACAGCTTCGGAGGACCTCATGTTGGATTTCGACGTCGGGGAGCTTTTGATGTCTGGAATTAACAACCCAGATTCAGAATTCTGGAAAATATGCCATCAGTTGGACGACAACAATGAGGGCTCAAAGAACTACAAATGGGCATCGTCTCATCATGCACCTCTGTGGTTCTCTGAGGATTACAAGGATTGGATGGGAGATGATGACTGTTTCCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

284

Amino Acids

32.27

Weight (kDa)

8.84

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	669
AccB7I	CCANNNNNTGG	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	461
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	3 cut(s)	112, 234, 366
AcsI	RAATTY	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	666
AfaI	GTAC	2 cut(s)	355, 481
AfiI	CCNNNNNNNGG	3 cut(s)	484, 655, 733
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	793
AluBI	AGCT	7 cut(s)	47, 131, 156, 250, 615, 638, 676
AluI	AGCT	7 cut(s)	47, 131, 156, 250, 615, 638, 676
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	2 cut(s)	140, 783
AlwI	GGATC	3 cut(s)	112, 234, 366
ApeKI	GCWGC	3 cut(s)	156, 596, 599
ApoI	RAATTY	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	64, 646
AsuHPI	GGTGA	3 cut(s)	358, 505, 539
AvaII	GGWCC	2 cut(s)	64, 646
AxyI	CCTNAGG	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	3 cut(s)	143, 583, 586
BccI	CCATC	5 cut(s)	258, 545, 551, 735, 817
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	140, 783
BfmI	CTRYAG	2 cut(s)	157, 610
BisI	GCNGC	4 cut(s)	157, 594, 597, 600
BlsI	GCNGC	4 cut(s)	158, 595, 598, 601
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	64, 646
BmgT120I	GGNCC	2 cut(s)	64, 646
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	80, 122
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	94, 289, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 655, 733
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	94, 289, 290
BseGI	GGATG	1 cut(s)	828
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	3 cut(s)	484, 655, 733
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	3 cut(s)	155, 227, 795
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	143, 583, 586
BsiHKAI	GWGCWC	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	484, 655, 733
BsmAI	GTCTC	2 cut(s)	140, 783
BsmBI	CGTCTC	1 cut(s)	783
BsmFI	GGGAC	1 cut(s)	584
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	425, 755
Bsp143I	GATC	4 cut(s)	117, 226, 309, 358
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	593
BspCNI	CTCAG	3 cut(s)	156, 226, 796
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	3 cut(s)	112, 234, 366
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	94, 289, 290
BssMI	GATC	4 cut(s)	117, 226, 309, 358
BssNI	GRCGYC	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	353, 459, 839
Bst6I	CTCTTC	2 cut(s)	216, 404
BstACI	GRCGYC	1 cut(s)	666
BstDEI	CTNAG	6 cut(s)	24, 164, 182, 213, 334, 804
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	828
BstKTI	GATC	4 cut(s)	120, 229, 312, 361
BstMAI	GTCTC	2 cut(s)	140, 783
BstMBI	GATC	4 cut(s)	117, 226, 309, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 247, 599
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	157, 610
BstV1I	GCAGC	3 cut(s)	143, 583, 586
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	117, 226
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	2 cut(s)	117, 226
Bsu36I	CCTNAGG	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	64, 646
Csp6I	GTAC	2 cut(s)	354, 480
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	3 cut(s)	95, 652, 785
CviQI	GTAC	2 cut(s)	354, 480
DdeI	CTNAG	6 cut(s)	24, 164, 182, 213, 334, 804
DpnI	GATC	4 cut(s)	119, 228, 311, 360
DpnII	GATC	4 cut(s)	117, 226, 309, 358
Eam1104I	CTCTTC	2 cut(s)	216, 404
EarI	CTCTTC	2 cut(s)	216, 404
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	755
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	64, 646
Eco81I	CCTNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	783
FaeI	CATG	3 cut(s)	98, 655, 788
FaiI	YATR	5 cut(s)	96, 209, 653, 724, 786
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	3 cut(s)	94, 651, 784
FblI	GTMKAC	1 cut(s)	461
Fnu4HI	GCNGC	4 cut(s)	157, 594, 597, 600
FokI	GGATG	1 cut(s)	835
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	4 cut(s)	157, 594, 597, 600
GluI	GCNGC	4 cut(s)	157, 594, 597, 600
Hin1I	GRCGYC	1 cut(s)	666
Hin1II	CATG	3 cut(s)	98, 655, 788
HincII	GTYRAC	2 cut(s)	391, 462
HindII	GTYRAC	2 cut(s)	391, 462
HinfI	GANTC	3 cut(s)	285, 495, 704
HpaI	GTTAAC	1 cut(s)	391
HphI	GGTGA	3 cut(s)	358, 505, 539
Hpy166II	GTNNAC	4 cut(s)	349, 391, 441, 462
Hpy188I	TCNGA	5 cut(s)	89, 619, 643, 709, 805
Hpy188III	TCNNGA	5 cut(s)	59, 139, 215, 687, 715
Hpy8I	GTNNAC	4 cut(s)	349, 391, 441, 462
Hpy99I	CGWCG	3 cut(s)	463, 668, 671
HpyAV	CCTTC	3 cut(s)	95, 337, 583
HpyCH4III	ACNGT	3 cut(s)	353, 459, 839
HpyCH4IV	ACGT	2 cut(s)	437, 666
HpyCH4V	TGCA	3 cut(s)	159, 473, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 247, 599
HpyF3I	CTNAG	6 cut(s)	24, 164, 182, 213, 334, 804
HpySE526I	ACGT	2 cut(s)	437, 666
Hsp92I	GRCGYC	1 cut(s)	666
Hsp92II	CATG	3 cut(s)	98, 655, 788
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	117, 226, 309, 358
LmnI	GCTCC	2 cut(s)	44, 673
Lsp1109I	GCAGC	3 cut(s)	143, 583, 586
LweI	GCATC	1 cut(s)	782
MaeII	ACGT	2 cut(s)	437, 666
MaeIII	GTNAC	3 cut(s)	267, 429, 511
MalI	GATC	4 cut(s)	119, 228, 311, 360
MboI	GATC	4 cut(s)	117, 226, 309, 358
MboII	GAAGA	9 cut(s)	18, 233, 352, 415, 418, 421, 595, 598, 638
MflI	RGATCY	2 cut(s)	117, 226
MhlI	GDGCHC	2 cut(s)	425, 755
MluCI	AATT	3 cut(s)	175, 690, 710
MmeI	TCCRAC	2 cut(s)	636, 714
MseI	TTAA	4 cut(s)	390, 491, 693, 850
MslI	CAYNNNNRTG	2 cut(s)	555, 793
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	53, 247, 599
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	117, 226, 309, 358
NlaIII	CATG	3 cut(s)	98, 655, 788
NmuCI	GTSAC	2 cut(s)	267, 511
OliI	CACNNNNGTG	1 cut(s)	793
PasI	CCCWGGG	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	285, 495, 704
PflMI	CCANNNNNTGG	1 cut(s)	733
PkrI	GCNGC	4 cut(s)	158, 595, 598, 601
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	64, 646
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	117, 226
RsaI	GTAC	2 cut(s)	355, 481
RsaNI	GTAC	2 cut(s)	354, 480
RseI	CAYNNNNRTG	2 cut(s)	555, 793
SalI	GTCGAC	1 cut(s)	460
SaqAI	TTAA	4 cut(s)	390, 491, 693, 850
SatI	GCNGC	4 cut(s)	157, 594, 597, 600
Sau3AI	GATC	4 cut(s)	117, 226, 309, 358
Sau96I	GGNCC	2 cut(s)	64, 646
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	425, 755
SfaNI	GCATC	1 cut(s)	782
SfcI	CTRYAG	2 cut(s)	157, 610
SinI	GGWCC	2 cut(s)	64, 646
SmiMI	CAYNNNNRTG	2 cut(s)	555, 793
SmlI	CTYRAG	2 cut(s)	59, 137
SmoI	CTYRAG	2 cut(s)	59, 137
Sse9I	AATT	3 cut(s)	175, 690, 710
SsiI	CCGC	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	3 cut(s)	353, 459, 839
TaiI	ACGT	2 cut(s)	440, 669
TaqI	TCGA	2 cut(s)	461, 663
TasI	AATT	3 cut(s)	175, 690, 710
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	3 cut(s)	285, 495, 704
Tru1I	TTAA	4 cut(s)	390, 491, 693, 850
Tru9I	TTAA	4 cut(s)	390, 491, 693, 850
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	267, 511
TseI	GCWGC	3 cut(s)	156, 596, 599
Tsp45I	GTSAC	2 cut(s)	267, 511
TspGWI	ACGGA	2 cut(s)	371, 467
TspRI	CASTG	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	733
VpaK11BI	GGWCC	2 cut(s)	64, 646
XapI	RAATTY	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	461
ZraI	GACGTC	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.