Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Reverse (-)

3473780 .. 3475855

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1051000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGAAGAAGTCCTTGTTGCTCTAAGGAGGGACTGAACAAAGGAGCATGGACTGCTCTGGAAGATCAAATTCTCACAGATTACATCAAAACCCATGGTGAAGGAAAATGGAGAAGGATTCCAAAGGAAGCTGGTCTCAGGAGATGTGGAAAGAGCTGCCGACTGAGGTGGCTCAATTATCTTAGACCTGATATCAAAAGGGGTAACATAACTCAGGAGGAAGAGGATCTCATCATTAGGCTCCACAAGCTACTAGGCAACAGATGGTCACTAATAGCAGGAAGAATTCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACACATACTTGCGAAAAAAAGTGAATGGTGCTGAAACACCAAGGCTATTAGGAAATAAGGTGGATGAGAACAATAAGAAGAAGAGGAAGAGAGACAACTCAGAGAAGACCAACCCATCTGTTAATAAAACCAAACCACGGGCCATGGTGAAGTCCGACAGCTTTGCAGTTATCCGTACGAAGGCATCAAAGTGCAACAAGGTTCTGGTCATGCCGGACCAACTGCTTGATCATCAGATTAATCATGGGTTGTTAGAAGACACTACCACTACCATTTCAGAATATAGCATGTTGGATTTTGATGTGGGGGAGCTCTTAGTGTCTGAAAATAATGATATTCCAGATGATTCAGACTTCTGGAAAATATGTCAGCAGTTGGAAGACAACACTAACAATGGTGGCTCGAAGAACAGATGCCCGTCATCGACATCGCTTGCACCTCTTTTGTTCTCAGATGAAATGCTCAAGGATTGGATGAGAGATGACTTTTTCAACCGTCAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

277

Amino Acids

31.82

Weight (kDa)

9.11

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	8.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 119	9.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	69, 285
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	462, 505
AgsI	TTSAA	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	131, 156, 250, 486, 637
AluI	AGCT	5 cut(s)	131, 156, 250, 486, 637
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	140, 411
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	69, 285
AseI	ATTAAT	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	465, 541
AsuHPI	GGTGA	2 cut(s)	110, 484
AvaII	GGWCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	3 cut(s)	437, 588, 711
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	258, 448
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	140, 411
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	465, 541
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	518, 728
BpiI	GAAGAC	3 cut(s)	437, 588, 711
BpuEI	CTTGAG	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	94, 365, 461, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 505
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	94, 365, 461, 468
BseGI	GGATG	2 cut(s)	394, 804
BseLI	CCNNNNNNNGG	2 cut(s)	462, 505
BseMII	CTCAG	5 cut(s)	151, 155, 227, 438, 789
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	539
BsiWI	CGTACG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	462, 505
BsmAI	GTCTC	2 cut(s)	140, 411
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	3 cut(s)	64, 226, 553
Bsp19I	CCATGG	2 cut(s)	94, 468
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	5 cut(s)	150, 156, 226, 437, 788
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	94, 365, 461, 468
BssMI	GATC	3 cut(s)	64, 226, 553
BssT1I	CCWWGG	3 cut(s)	94, 365, 468
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	3 cut(s)	216, 401, 407
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	8 cut(s)	24, 137, 164, 182, 213, 424, 640, 775
BstDSI	CCRYGG	3 cut(s)	94, 461, 468
BstF5I	GGATG	2 cut(s)	394, 804
BstKTI	GATC	3 cut(s)	67, 229, 556
BstMAI	GTCTC	2 cut(s)	140, 411
BstMBI	GATC	3 cut(s)	64, 226, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 247
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	3 cut(s)	437, 588, 711
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	467
BtgI	CCRYGG	3 cut(s)	94, 461, 468
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	394, 804
BtsIMutI	CAGTG	1 cut(s)	830
Cac8I	GCNNGC	1 cut(s)	759
Cfr13I	GGNCC	2 cut(s)	465, 541
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	6 cut(s)	48, 95, 469, 535, 569, 613
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	8 cut(s)	24, 137, 164, 182, 213, 424, 640, 775
DpnI	GATC	3 cut(s)	66, 228, 555
DpnII	GATC	3 cut(s)	64, 226, 553
Eam1104I	CTCTTC	3 cut(s)	216, 401, 407
EarI	CTCTTC	3 cut(s)	216, 401, 407
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	3 cut(s)	94, 365, 468
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	541
Eco53kI	GAGCTC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	3 cut(s)	94, 365, 468
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	3 cut(s)	94, 365, 468
FaeI	CATG	6 cut(s)	51, 98, 472, 538, 572, 616
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	6 cut(s)	47, 94, 468, 534, 568, 612
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	401, 811
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	6 cut(s)	51, 98, 472, 538, 572, 616
HinfI	GANTC	2 cut(s)	118, 671
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	110, 484
Hpy188I	TCNGA	7 cut(s)	427, 481, 561, 604, 649, 676, 778
Hpy188III	TCNNGA	5 cut(s)	59, 139, 215, 665, 682
HpyAV	CCTTC	3 cut(s)	95, 108, 499
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4V	TGCA	3 cut(s)	491, 519, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 247
HpyF3I	CTNAG	8 cut(s)	24, 137, 164, 182, 213, 424, 640, 775
Hsp92II	CATG	6 cut(s)	51, 98, 472, 538, 572, 616
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	64, 226, 553
LmnI	GCTCC	3 cut(s)	44, 246, 634
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	518, 728
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	203, 267
MalI	GATC	3 cut(s)	66, 228, 555
MboI	GATC	3 cut(s)	64, 226, 553
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	3 cut(s)	69, 175, 285
MmeI	TCCRAC	3 cut(s)	504, 597, 681
MnlI	CCTC	6 cut(s)	22, 159, 211, 217, 402, 774
MseI	TTAA	2 cut(s)	447, 564
MslI	CAYNNNNRTG	1 cut(s)	514
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	53, 247
NcoI	CCATGG	2 cut(s)	94, 468
NdeII	GATC	3 cut(s)	64, 226, 553
NlaIII	CATG	6 cut(s)	51, 98, 472, 538, 572, 616
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	118, 671
Pfl23II	CGTACG	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	158
PshBI	ATTAAT	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspLI	CGTACG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	2 cut(s)	465, 541
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	447, 564
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	3 cut(s)	64, 226, 553
Sau96I	GGNCC	2 cut(s)	465, 541
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	518, 728
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	3 cut(s)	69, 175, 285
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	3 cut(s)	94, 365, 468
TaaI	ACNGT	1 cut(s)	821
TaqI	TCGA	2 cut(s)	728, 749
TasI	AATT	3 cut(s)	69, 175, 285
TfiI	GAWTC	2 cut(s)	118, 671
Tru1I	TTAA	2 cut(s)	447, 564
Tru9I	TTAA	2 cut(s)	447, 564
TscAI	CASTG	1 cut(s)	830
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	2 cut(s)	321, 795
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	541
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	2 cut(s)	69, 285
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.