Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Reverse (-)

1154712 .. 1155821

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGAAGAAGTCCTTGTTGTGTAAAGGAGGGACTGAACAGAGGAGCTTGGAGTCCTATTGAGGACCAAGTTCTCATAGACTACATCAACACCCATGGAGAAGGAAAATGGAGAAGAATTCCCAAAGAAGCTGGTCTAAAGAGATGCGGAAAGAGCTGCAGACTGAGGTGGCTGAATTATCTGAGACCTGATATCAAAAGGGGTAATATAACTCAGGAAGAAGAGGATCTCATCATTAGGCTCCACAAGCTACTAGGCAACAGATGGTCCCTAATAGCTGGGAGAATACCAGGACGAACAGACAATGAAATCAAGAATTACTGGAACACGACCTTAGGAAAGAAGGTGAATAACGGCCAGGATGATGTTCATCAAGTACATCTAACGGTAGAGAATAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATATAAGACTAATTCGTTGACAACGGTGCTGGACTCCATTGCTGCCATTCATACAAGGGCAGTGAGATGCAACAGAGTAGTAGTCACCTCGCACTTAGTCCCGCACCCATTAGTCAAAAATGTTCATGGTGCTGCTTTGGAAGAGGGCATAAATAACTCTGAGGAAGACAACACTATTACTACCACCACCACCACTACTACTTCCCCTTCAGAGAATTTGGTGTTAGAATTTGATGTGGGGAAGCTCTTTAATGTGTCGGAAAAGATTCCAGATAGCTCCGACGACTACTGGGAACTATGTCAATTTGGTGGCGGTGACAAAGGTTTGGAGGATGAATACGGTGGCAATATCAATAATGGTGGTGGTAGTTCAAACAATTACAAGTGGTCCTCAGCTAGCTCCGAACCAATCTTGTTCTCGGAGGAAATGCTCAAGGATTGGATGAGAGAGGACTGTTTCCACCATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

302

Amino Acids

34.1

Weight (kDa)

8.7

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	3.4e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 120	1.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	147, 533, 744
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	117, 646, 659
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	804
AjnI	CCWGG	2 cut(s)	289, 357
AluBI	AGCT	9 cut(s)	47, 131, 156, 250, 278, 676, 708, 827, 831
AluI	AGCT	9 cut(s)	47, 131, 156, 250, 278, 676, 708, 827, 831
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	156, 473, 563
ApoI	RAATTY	3 cut(s)	117, 646, 659
Asp700I	GAANNNNTTC	1 cut(s)	696
AspS9I	GGNCC	3 cut(s)	64, 267, 819
AsuHPI	GGTGA	3 cut(s)	358, 508, 758
AsuNHI	GCTAGC	1 cut(s)	827
AvaII	GGWCC	3 cut(s)	64, 267, 819
AxyI	CCTNAGG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	603
BbvCI	CCTCAGC	1 cut(s)	823
BbvI	GCAGC	3 cut(s)	143, 460, 550
BccI	CCATC	2 cut(s)	258, 903
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	291, 359
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	254, 828
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	3 cut(s)	157, 474, 564
BlsI	GCNGC	3 cut(s)	158, 475, 565
Bme1390I	CCNGG	2 cut(s)	291, 359
Bme18I	GGWCC	3 cut(s)	64, 267, 819
BmgT120I	GGNCC	3 cut(s)	64, 267, 819
BmiI	GGNNCC	2 cut(s)	242, 269
BmrFI	CCNGG	2 cut(s)	291, 359
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	2 cut(s)	134, 488
BmtI	GCTAGC	1 cut(s)	831
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	326, 725
Bse21I	CCTNAGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	291, 359
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	367, 769, 879
BseJI	GATNNNNATC	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	5 cut(s)	155, 173, 227, 582, 837
BseNI	ACTGG	2 cut(s)	326, 725
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	143, 460, 550
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	357
BslFI	GGGAC	3 cut(s)	45, 253, 515
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	3 cut(s)	45, 253, 515
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	147, 533, 744
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	5 cut(s)	156, 174, 226, 583, 836
BspLI	GGNNCC	2 cut(s)	242, 269
BspMAI	CTGCAG	1 cut(s)	161
BspOI	GCTAGC	1 cut(s)	831
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	326, 725
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 359
Bst4CI	ACNGT	4 cut(s)	388, 457, 773, 887
Bst6I	CTCTTC	2 cut(s)	216, 567
BstC8I	GCNNGC	1 cut(s)	829
BstDEI	CTNAG	7 cut(s)	164, 182, 213, 334, 526, 591, 823
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	367, 769, 879
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 247
BstNI	CCWGG	2 cut(s)	291, 359
BstSCI	CCNGG	2 cut(s)	289, 357
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	143, 460, 550
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	367, 769, 879
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	829
Cfr13I	GGNCC	3 cut(s)	64, 267, 819
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
CviAII	CATG	2 cut(s)	95, 557
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	7 cut(s)	164, 182, 213, 334, 526, 591, 823
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	216, 567
EarI	CTCTTC	2 cut(s)	216, 567
Eco130I	CCWWGG	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	64, 267, 819
Eco57I	CTGAAG	1 cut(s)	624
Eco81I	CCTNAGG	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	289, 357
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	98, 560
FaiI	YATR	8 cut(s)	77, 96, 209, 435, 483, 558, 581, 730
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	3 cut(s)	45, 253, 515
FatI	CATG	2 cut(s)	94, 556
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	157, 474, 564
FokI	GGATG	3 cut(s)	374, 776, 886
Fsp4HI	GCNGC	3 cut(s)	157, 474, 564
FspBI	CTAG	2 cut(s)	254, 828
GluI	GCNGC	3 cut(s)	157, 474, 564
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	98, 560
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	3 cut(s)	52, 464, 697
HphI	GGTGA	3 cut(s)	358, 508, 758
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	7 cut(s)	183, 592, 643, 691, 712, 835, 853
Hpy188III	TCNNGA	3 cut(s)	215, 313, 701
Hpy8I	GTNNAC	1 cut(s)	450
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	3 cut(s)	95, 337, 648
HpyCH4III	ACNGT	4 cut(s)	388, 457, 773, 887
HpyCH4V	TGCA	2 cut(s)	159, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 247
HpyF3I	CTNAG	7 cut(s)	164, 182, 213, 334, 526, 591, 823
Hsp92II	CATG	2 cut(s)	98, 560
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	4 cut(s)	44, 246, 713, 836
Lsp1109I	GCAGC	3 cut(s)	143, 460, 550
LweI	GCATC	2 cut(s)	134, 488
MaeI	CTAG	2 cut(s)	254, 828
MaeIII	GTNAC	2 cut(s)	514, 746
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	8 cut(s)	117, 175, 316, 442, 646, 659, 734, 808
MlyI	GAGTC	2 cut(s)	61, 458
MmeI	TCCRAC	2 cut(s)	669, 735
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	1 cut(s)	681
MspR9I	CCNGG	2 cut(s)	291, 359
MvaI	CCWGG	2 cut(s)	291, 359
MwoI	GCNNNNNNNGC	2 cut(s)	153, 247
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	226
NheI	GCTAGC	1 cut(s)	827
NlaIII	CATG	2 cut(s)	98, 560
NlaIV	GGNNCC	2 cut(s)	242, 269
NmuCI	GTSAC	2 cut(s)	514, 746
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	158, 475, 565
PleI	GAGTC	2 cut(s)	60, 458
PpsI	GAGTC	2 cut(s)	60, 458
Psp6I	CCWGG	2 cut(s)	289, 357
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	289, 357
PspN4I	GGNNCC	2 cut(s)	242, 269
PspPI	GGNCC	3 cut(s)	64, 267, 819
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	3 cut(s)	157, 474, 564
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	3 cut(s)	64, 267, 819
SchI	GAGTC	2 cut(s)	61, 458
ScrFI	CCNGG	2 cut(s)	291, 359
SfaNI	GCATC	2 cut(s)	134, 488
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	64, 267, 819
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	8 cut(s)	117, 175, 316, 442, 646, 659, 734, 808
SsiI	CCGC	3 cut(s)	147, 533, 744
SspMI	CTAG	2 cut(s)	254, 828
StyD4I	CCNGG	2 cut(s)	289, 357
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	388, 457, 773, 887
TasI	AATT	8 cut(s)	117, 175, 316, 442, 646, 659, 734, 808
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	2 cut(s)	514, 746
TseI	GCWGC	3 cut(s)	156, 473, 563
Tsp45I	GTSAC	2 cut(s)	514, 746
TspDTI	ATGAA	5 cut(s)	321, 359, 470, 545, 780
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	3 cut(s)	64, 267, 819
XapI	RAATTY	3 cut(s)	117, 646, 659
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	254, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.