Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Forward (+)

71093763 .. 71095333

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG517100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTGTAGATGGTCCCTAATAGCTGGGAGAATACCAGGACGAACAGACAATGAAATCAAGAATTACTGGAACACGACCTTAGGAAAGAAGGTGAATAACGGCCAGGATGATGTTCATCAAGTACATCTAACGGTAGAGAATAAGAATAAGAAGAAGAAGAAGAAGAAATATAAGACTAAATCGTTGACAACGGTGCTGGACTCCATTGCTGCCATCCGTACAAGGGCAGTCAGATGCAACAGAGTAGTAGTCACCTCGCACTTAGTCCCGCACCCATTAGTCAAAAATGTTCATGGTACTGCTTTGGAAGAGGGCATAAATAACTCTGAGGAAGACAACACTATTACTACCACCACCACCACTACTACTTCCCCTTCAGAGAATTTGGTGTTAGAATTTGATGTGGGGAAGCTCTTTAATGTGTCGGAAAATATTCCAGATAGCTCCGACGACTACTGGGAACTATGTCAGTTTGGTGGCGGTGACAAAGGTTTGGAGGATCAATACGGTGGCAATATCAATAATGGTGGTGGTAGCTCAAACAATTACAAGTGGTCCTCAGCTAGCTCCGAACCAATCTTGTTCTCGGAGGAAATGCTCAAGGATTGGATGAGAGAGGACTGTTTCCACCATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

213

Amino Acids

23.91

Weight (kDa)

6.38

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 27	2.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	269, 480
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	382, 395
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	3 cut(s)	123, 220, 298
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	34, 102
AluBI	AGCT	6 cut(s)	23, 412, 444, 537, 563, 567
AluI	AGCT	6 cut(s)	23, 412, 444, 537, 563, 567
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	382, 395
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	12, 555
AsuHPI	GGTGA	3 cut(s)	103, 244, 494
AsuNHI	GCTAGC	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	12, 555
AxyI	CCTNAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	3 cut(s)	3, 221, 639
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	36, 104
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	36, 104
Bme18I	GGWCC	2 cut(s)	12, 555
BmgT120I	GGNCC	2 cut(s)	12, 555
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	36, 104
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	224
BmtI	GCTAGC	1 cut(s)	567
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	71, 461
Bse21I	CCTNAGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	36, 104
BseGI	GGATG	3 cut(s)	112, 213, 615
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	318, 573
BseNI	ACTGG	2 cut(s)	71, 461
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	2 cut(s)	269, 480
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	319, 572
BspLI	GGNNCC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	71, 461
BssMI	GATC	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	36, 104
Bst4CI	ACNGT	4 cut(s)	133, 193, 509, 623
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	4 cut(s)	79, 262, 327, 559
BstF5I	GGATG	3 cut(s)	112, 213, 615
BstKTI	GATC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	499
BstNI	CCWGG	2 cut(s)	36, 104
BstSCI	CCNGG	2 cut(s)	34, 102
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	112, 213, 615
Cac8I	GCNNGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	12, 555
Csp6I	GTAC	3 cut(s)	122, 219, 297
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	7 cut(s)	23, 102, 412, 444, 537, 563, 567
CviKI_1	RGCY	7 cut(s)	23, 102, 412, 444, 537, 563, 567
CviQI	GTAC	3 cut(s)	122, 219, 297
DdeI	CTNAG	4 cut(s)	79, 262, 327, 559
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	12, 555
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	34, 102
FaeI	CATG	1 cut(s)	296
FaiI	YATR	4 cut(s)	171, 294, 317, 466
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	119, 200, 622
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	3 cut(s)	103, 244, 494
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	7 cut(s)	233, 328, 379, 427, 448, 571, 589
Hpy188III	TCNNGA	2 cut(s)	58, 437
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	82, 384
HpyCH4III	ACNGT	4 cut(s)	133, 193, 509, 623
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	4 cut(s)	79, 262, 327, 559
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	2 cut(s)	449, 572
LpnPI	CCDG	9 cut(s)	9, 21, 48, 52, 89, 116, 182, 442, 450
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	250, 482
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	7 cut(s)	163, 166, 169, 172, 175, 320, 344
MluCI	AATT	4 cut(s)	61, 382, 395, 544
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	405, 471
MnlI	CCTC	7 cut(s)	265, 304, 322, 490, 568, 583, 610
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	36, 104
MvaI	CCWGG	2 cut(s)	36, 104
NdeII	GATC	1 cut(s)	499
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	250, 482
PdmI	GAANNNNTTC	1 cut(s)	432
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	34, 102
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	34, 102
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	2 cut(s)	12, 555
RsaI	GTAC	3 cut(s)	123, 220, 298
RsaNI	GTAC	3 cut(s)	122, 219, 297
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	2 cut(s)	12, 555
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	36, 104
SfaNI	GCATC	1 cut(s)	224
SinI	GGWCC	2 cut(s)	12, 555
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	4 cut(s)	61, 382, 395, 544
SsiI	CCGC	2 cut(s)	269, 480
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	34, 102
TaaI	ACNGT	4 cut(s)	133, 193, 509, 623
TasI	AATT	4 cut(s)	61, 382, 395, 544
TatI	WGTACW	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	2 cut(s)	250, 482
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	250, 482
TspDTI	ATGAA	3 cut(s)	66, 104, 281
TspGWI	ACGGA	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	12, 555
XapI	RAATTY	2 cut(s)	382, 395
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.