Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Reverse (-)

1186285 .. 1187653

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGAAGAAGTCCTTGTTGTGTTAAGGAGGGACTGAACAGAGGAGCTTGGACTGCTATTGAGGACCAAGTTCTCATAGACTACATTAACACCCATGGAGAAGGAAAATGGAGAAGAATTCCCAAAGAAGCTGGTCTAAAGAGATGCGGAAAGAGCTGCAGACTGAGGTGGCTGAATTATCTGAGACCTGATATCAAAAGGGGTAATATAACTCAGGAAGAAGAGGATCTCATCATTAGGCTCCACAAGCTACTAGGCAACAGATGGTCCCTAATAGCTGGGAGAATACCAGGACGAACAGACAATGAAATCAAGAATTACTGGAACACGACCTTAGGAAAGAAGGTGAATAACGGCCAGGATGATGTTCATCAAGTACATCTAACGGTAGAGAATAAGAATAAGAAGAAGAAGACGAAATATAAGACTAAATCGTTGACAACGGTGCTGGACTCCATTGCTGCCATCCGTACAAGGGCAGTGAGATGCAACAGAGTAGTATTCACCTCGCACTTAGTCCCGCACCCATTAGTCAAAAATGTTCATGGTACTGCTTTGGAAGAGGGCATAAATAACTCTGAGGAAGACAACACTATTACTACCACCACCACCACTACTACTTCCCCTTCAGAGAATTTGGTGTTAGAATTTGATGTGGGGAAGCTCTTTAATGTGTCGGAAAATATTCCAGATAGCTCCGACGACTACTGGGAACTATGTCAGTTTGGTGGCGATGACAAAGTTTTGGAGGATCAATACGGTGGCAATATCAATAATGGTGGTGGTAGCTCAAACAATTACAAGTGGTCCTTAGGTAGCTCCGAACCAATCTTGTTCTCGGAGGAAATGCTCAAGGATTGGATGAGAGAGGACTGTTTCCATCATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.76

Weight (kDa)

7.63

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.8e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 120	1.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 521
AclWI	GGATC	2 cut(s)	234, 759
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	117, 634, 647
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	3 cut(s)	378, 472, 550
AfiI	CCNNNNNNNGG	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	289, 357
AluBI	AGCT	9 cut(s)	47, 131, 156, 250, 278, 664, 696, 789, 819
AluI	AGCT	9 cut(s)	47, 131, 156, 250, 278, 664, 696, 789, 819
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	234, 759
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	156, 461
ApoI	RAATTY	3 cut(s)	117, 634, 647
Asp700I	GAANNNNTTC	1 cut(s)	684
AspS9I	GGNCC	3 cut(s)	64, 267, 807
AsuHPI	GGTGA	2 cut(s)	358, 496
AvaII	GGWCC	3 cut(s)	64, 267, 807
AxyI	CCTNAGG	2 cut(s)	334, 811
BbsI	GAAGAC	2 cut(s)	419, 591
BbvI	GCAGC	2 cut(s)	143, 448
BccI	CCATC	3 cut(s)	258, 473, 888
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	291, 359
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	157, 462
BlsI	GCNGC	2 cut(s)	158, 463
Bme1390I	CCNGG	2 cut(s)	291, 359
Bme18I	GGWCC	3 cut(s)	64, 267, 807
BmgT120I	GGNCC	3 cut(s)	64, 267, 807
BmiI	GGNNCC	2 cut(s)	242, 269
BmrFI	CCNGG	2 cut(s)	291, 359
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	2 cut(s)	134, 476
BmuI	ACTGGG	1 cut(s)	718
BpiI	GAAGAC	2 cut(s)	419, 591
BpuEI	CTTGAG	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	326, 713
Bse21I	CCTNAGG	2 cut(s)	334, 811
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	291, 359
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	367, 465, 867
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	155, 173, 227, 570
BseNI	ACTGG	2 cut(s)	326, 713
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	143, 448
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	357
BslFI	GGGAC	3 cut(s)	45, 253, 503
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	3 cut(s)	45, 253, 503
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	226, 751
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	2 cut(s)	147, 521
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	4 cut(s)	156, 174, 226, 571
BspLI	GGNNCC	2 cut(s)	242, 269
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	234, 759
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	326, 713
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	226, 751
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 359
Bst4CI	ACNGT	4 cut(s)	388, 445, 761, 875
Bst6I	CTCTTC	2 cut(s)	216, 555
BstDEI	CTNAG	7 cut(s)	164, 182, 213, 334, 514, 579, 811
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	367, 465, 867
BstKTI	GATC	2 cut(s)	229, 754
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	226, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 153, 247
BstNI	CCWGG	2 cut(s)	291, 359
BstSCI	CCNGG	2 cut(s)	289, 357
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	143, 448
BstV2I	GAAGAC	2 cut(s)	419, 591
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu36I	CCTNAGG	2 cut(s)	334, 811
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	3 cut(s)	367, 465, 867
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cfr13I	GGNCC	3 cut(s)	64, 267, 807
Csp6I	GTAC	3 cut(s)	377, 471, 549
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	2 cut(s)	95, 545
CviQI	GTAC	3 cut(s)	377, 471, 549
DdeI	CTNAG	7 cut(s)	164, 182, 213, 334, 514, 579, 811
DpnI	GATC	2 cut(s)	228, 753
DpnII	GATC	2 cut(s)	226, 751
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	216, 555
EarI	CTCTTC	2 cut(s)	216, 555
Eco130I	CCWWGG	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	64, 267, 807
Eco57I	CTGAAG	1 cut(s)	612
Eco81I	CCTNAGG	2 cut(s)	334, 811
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	289, 357
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	98, 548
FaiI	YATR	7 cut(s)	77, 96, 209, 423, 546, 569, 718
FalI	AAGNNNNNCTT	3 cut(s)	30, 794, 826
FaqI	GGGAC	3 cut(s)	45, 253, 503
FatI	CATG	2 cut(s)	94, 544
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	157, 462
FokI	GGATG	3 cut(s)	374, 452, 874
Fsp4HI	GCNGC	2 cut(s)	157, 462
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	2 cut(s)	157, 462
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	98, 548
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	452
HphI	GGTGA	2 cut(s)	358, 496
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	7 cut(s)	183, 580, 631, 679, 700, 823, 841
Hpy188III	TCNNGA	3 cut(s)	215, 313, 689
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	3 cut(s)	95, 337, 636
HpyCH4III	ACNGT	4 cut(s)	388, 445, 761, 875
HpyCH4V	TGCA	2 cut(s)	159, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 153, 247
HpyF3I	CTNAG	7 cut(s)	164, 182, 213, 334, 514, 579, 811
Hsp92II	CATG	2 cut(s)	98, 548
Kzo9I	GATC	2 cut(s)	226, 751
LmnI	GCTCC	4 cut(s)	44, 246, 701, 824
Lsp1109I	GCAGC	2 cut(s)	143, 448
LweI	GCATC	2 cut(s)	134, 476
MaeI	CTAG	1 cut(s)	254
MalI	GATC	2 cut(s)	228, 753
MboI	GATC	2 cut(s)	226, 751
MboII	GAAGA	9 cut(s)	18, 126, 230, 233, 418, 421, 424, 572, 596
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	6 cut(s)	117, 175, 316, 634, 647, 796
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	657, 723
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	3 cut(s)	24, 87, 669
MspR9I	CCNGG	2 cut(s)	291, 359
MvaI	CCWGG	2 cut(s)	291, 359
MwoI	GCNNNNNNNGC	3 cut(s)	53, 153, 247
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	226, 751
NlaIII	CATG	2 cut(s)	98, 548
NlaIV	GGNNCC	2 cut(s)	242, 269
PdmI	GAANNNNTTC	1 cut(s)	684
PkrI	GCNGC	2 cut(s)	158, 463
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	289, 357
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	289, 357
PspN4I	GGNNCC	2 cut(s)	242, 269
PspPI	GGNCC	3 cut(s)	64, 267, 807
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	378, 472, 550
RsaNI	GTAC	3 cut(s)	377, 471, 549
SaqAI	TTAA	3 cut(s)	24, 87, 669
SatI	GCNGC	2 cut(s)	157, 462
Sau3AI	GATC	2 cut(s)	226, 751
Sau96I	GGNCC	3 cut(s)	64, 267, 807
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	291, 359
SfaNI	GCATC	2 cut(s)	134, 476
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	64, 267, 807
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	6 cut(s)	117, 175, 316, 634, 647, 796
SsiI	CCGC	2 cut(s)	147, 521
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	289, 357
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	388, 445, 761, 875
TasI	AATT	6 cut(s)	117, 175, 316, 634, 647, 796
TatI	WGTACW	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	24, 87, 669
Tru9I	TTAA	3 cut(s)	24, 87, 669
TscAI	CASTG	1 cut(s)	486
TseI	GCWGC	2 cut(s)	156, 461
TspDTI	ATGAA	3 cut(s)	321, 359, 533
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	486
VpaK11BI	GGWCC	3 cut(s)	64, 267, 807
XapI	RAATTY	3 cut(s)	117, 634, 647
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.