Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Forward (+)

67821144 .. 67821785

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG523000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTGTAGATGGTCCCTAATAGCTGGGAGAATACCAGGACGAACAGACAATGAAATCAAGAATTACTGGAACACGACCTTAGGAAAGAAGGTGAATAACGGCCAGGATGATGTTCATCAAGTACATCTAACGGTAGAGAATAAGAATAAGAAGAAGAAGAAGAAGAAATATAAGACTAAATCGTTGACAACGGTGCTGGACTCCATTGCTGCCATCCGTACAAGGGCAGTGAGATGCAACAGAGTAGTAGTCACCTCGCACTTAGTCCCGCACCCATTAGTCAAAAATGTTCATGGTACTGCTTTGGAAGAGGGCATAAATAACTCTGAGGAAGACAACACTATTACTACCACCACCACCACTACTACTTCCCCTTCAGAGAATTTGGTGTTAGAATTTGATGTGGGGAAGCTCTTTAATGTGTCGGAAAATATTCCAGATAGCTCCGACGACTACTGGGAACTATGTCAGTTTGGTGGCGGTGACAAAGGTTTGGAGGATCAATACGGTGGCAATATCAATAATGGTGGTGGTAGCTCAAACAATTACAAGTGGTCCTCAGCTAGCTCCGAACCAATCTTGTTCTCGGAGGAAATGCTCAAGGATTGGATGAGAGAGGACTGTTTCCACCATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

213

Amino Acids

23.91

Weight (kDa)

6.38

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 27	2.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	269, 480
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	382, 395
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	3 cut(s)	123, 220, 298
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	34, 102
AluBI	AGCT	6 cut(s)	23, 412, 444, 537, 563, 567
AluI	AGCT	6 cut(s)	23, 412, 444, 537, 563, 567
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	382, 395
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	12, 555
AsuHPI	GGTGA	3 cut(s)	103, 244, 494
AsuNHI	GCTAGC	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	12, 555
AxyI	CCTNAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	3 cut(s)	3, 221, 639
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	36, 104
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	36, 104
Bme18I	GGWCC	2 cut(s)	12, 555
BmgT120I	GGNCC	2 cut(s)	12, 555
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	36, 104
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	224
BmtI	GCTAGC	1 cut(s)	567
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	71, 461
Bse21I	CCTNAGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	36, 104
BseGI	GGATG	3 cut(s)	112, 213, 615
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	318, 573
BseNI	ACTGG	2 cut(s)	71, 461
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	2 cut(s)	269, 480
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	319, 572
BspLI	GGNNCC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	71, 461
BssMI	GATC	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	36, 104
Bst4CI	ACNGT	4 cut(s)	133, 193, 509, 623
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	4 cut(s)	79, 262, 327, 559
BstF5I	GGATG	3 cut(s)	112, 213, 615
BstKTI	GATC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	499
BstNI	CCWGG	2 cut(s)	36, 104
BstSCI	CCNGG	2 cut(s)	34, 102
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	112, 213, 615
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	12, 555
Csp6I	GTAC	3 cut(s)	122, 219, 297
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	7 cut(s)	23, 102, 412, 444, 537, 563, 567
CviKI_1	RGCY	7 cut(s)	23, 102, 412, 444, 537, 563, 567
CviQI	GTAC	3 cut(s)	122, 219, 297
DdeI	CTNAG	4 cut(s)	79, 262, 327, 559
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	12, 555
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	34, 102
FaeI	CATG	1 cut(s)	296
FaiI	YATR	4 cut(s)	171, 294, 317, 466
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	119, 200, 622
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	3 cut(s)	103, 244, 494
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	6 cut(s)	328, 379, 427, 448, 571, 589
Hpy188III	TCNNGA	2 cut(s)	58, 437
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	82, 384
HpyCH4III	ACNGT	4 cut(s)	133, 193, 509, 623
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	4 cut(s)	79, 262, 327, 559
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	2 cut(s)	449, 572
LpnPI	CCDG	9 cut(s)	9, 21, 48, 52, 89, 116, 182, 442, 450
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	250, 482
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	7 cut(s)	163, 166, 169, 172, 175, 320, 344
MluCI	AATT	4 cut(s)	61, 382, 395, 544
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	405, 471
MnlI	CCTC	7 cut(s)	265, 304, 322, 490, 568, 583, 610
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	36, 104
MvaI	CCWGG	2 cut(s)	36, 104
NdeII	GATC	1 cut(s)	499
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	250, 482
PdmI	GAANNNNTTC	1 cut(s)	432
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	34, 102
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	34, 102
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	2 cut(s)	12, 555
RsaI	GTAC	3 cut(s)	123, 220, 298
RsaNI	GTAC	3 cut(s)	122, 219, 297
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	2 cut(s)	12, 555
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	36, 104
SfaNI	GCATC	1 cut(s)	224
SinI	GGWCC	2 cut(s)	12, 555
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	4 cut(s)	61, 382, 395, 544
SsiI	CCGC	2 cut(s)	269, 480
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	34, 102
TaaI	ACNGT	4 cut(s)	133, 193, 509, 623
TasI	AATT	4 cut(s)	61, 382, 395, 544
TatI	WGTACW	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	250, 482
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	250, 482
TspDTI	ATGAA	3 cut(s)	66, 104, 281
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	12, 555
XapI	RAATTY	2 cut(s)	382, 395
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.