Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002888.1

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Forward (+)

103770 .. 104399

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002888.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgtgtagatggtccctaatagctgggagaataccaggacgaacagacaatgaaatcaagaattactggaacacgaccttaggaaagaaggtgaataacggccaggatgatgttcatcaagtacatctaacggtagagaataagaataagaagaagaagaagaagaaatataagactaaatcgttgacaacggtgctggattccattgccgccatccgtacaagggcagtgagatgcgtcacctcgcacttagtcccgcacccattagtcaaaaatgttcacggtactgctttggaagagagcataaataactctgaggaagacaacactattactaccgccaccaccactactacttccccttcagagaatttggtgttagaatttgatgtggggaagctctttaatgtgtcggaaagtattccagatagctccgacgactactgggaactatgtcagtttggtggcggtgacaaagttttggaggatcaatacggtggctatatcaataatggtggtggtagctcaaacaattacaagtggtcctcagctagctccgaaccaatcttgttctcggaggaaatactcaaggattggatgagagaggactgtttccaccatcaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

209

Amino Acids

23.48

Weight (kDa)

6.17

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	210, 257, 339, 468
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	370, 383
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	123, 220, 286
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	34, 102
AluBI	AGCT	6 cut(s)	23, 400, 432, 525, 551, 555
AluI	AGCT	6 cut(s)	23, 400, 432, 525, 551, 555
AlwI	GGATC	1 cut(s)	495
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	370, 383
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	12, 543
AsuHPI	GGTGA	3 cut(s)	103, 232, 482
AsuNHI	GCTAGC	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	12, 543
AxyI	CCTNAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	3, 221, 627
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	36, 104
BfaI	CTAG	1 cut(s)	552
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	36, 104
Bme18I	GGWCC	2 cut(s)	12, 543
BmgT120I	GGNCC	2 cut(s)	12, 543
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	36, 104
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	224
BmtI	GCTAGC	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	71, 449
Bse21I	CCTNAGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	36, 104
BseGI	GGATG	3 cut(s)	112, 213, 603
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	306, 561
BseNI	ACTGG	2 cut(s)	71, 449
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	4 cut(s)	210, 257, 339, 468
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	307, 560
BspLI	GGNNCC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	71, 449
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	36, 104
Bst4CI	ACNGT	5 cut(s)	133, 193, 284, 497, 611
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	79, 250, 315, 547
BstF5I	GGATG	3 cut(s)	112, 213, 603
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstNI	CCWGG	2 cut(s)	36, 104
BstSCI	CCNGG	2 cut(s)	34, 102
BstV2I	GAAGAC	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	112, 213, 603
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	12, 543
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	122, 219, 285
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviJI	RGCY	8 cut(s)	23, 102, 400, 432, 501, 525, 551, 555
CviKI_1	RGCY	8 cut(s)	23, 102, 400, 432, 501, 525, 551, 555
CviQI	GTAC	3 cut(s)	122, 219, 285
DdeI	CTNAG	4 cut(s)	79, 250, 315, 547
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	12, 543
Eco57I	CTGAAG	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	34, 102
FaiI	YATR	4 cut(s)	171, 305, 454, 504
FaqI	GGGAC	1 cut(s)	239
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	119, 200, 610
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	3 cut(s)	103, 232, 482
Hpy166II	GTNNAC	2 cut(s)	186, 280
Hpy188I	TCNGA	6 cut(s)	316, 367, 415, 436, 559, 577
Hpy188III	TCNNGA	2 cut(s)	58, 425
Hpy8I	GTNNAC	2 cut(s)	186, 280
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	82, 372
HpyCH4III	ACNGT	5 cut(s)	133, 193, 284, 497, 611
HpyF3I	CTNAG	4 cut(s)	79, 250, 315, 547
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	2 cut(s)	437, 560
LpnPI	CCDG	9 cut(s)	9, 21, 48, 52, 89, 116, 182, 430, 438
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	238, 470
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	7 cut(s)	163, 166, 169, 172, 175, 308, 332
MluCI	AATT	4 cut(s)	61, 370, 383, 532
MmeI	TCCRAC	2 cut(s)	393, 459
MnlI	CCTC	6 cut(s)	253, 310, 478, 556, 571, 598
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	36, 104
MvaI	CCWGG	2 cut(s)	36, 104
NdeII	GATC	1 cut(s)	487
NheI	GCTAGC	1 cut(s)	551
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	238, 470
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	34, 102
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	34, 102
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	2 cut(s)	12, 543
RsaI	GTAC	3 cut(s)	123, 220, 286
RsaNI	GTAC	3 cut(s)	122, 219, 285
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	2 cut(s)	12, 543
ScrFI	CCNGG	2 cut(s)	36, 104
SetI	ASST	9 cut(s)	25, 80, 93, 245, 402, 434, 527, 553, 557
SfaNI	GCATC	1 cut(s)	224
SinI	GGWCC	2 cut(s)	12, 543
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	4 cut(s)	61, 370, 383, 532
SsiI	CCGC	4 cut(s)	210, 257, 339, 468
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	34, 102
TaaI	ACNGT	5 cut(s)	133, 193, 284, 497, 611
TasI	AATT	4 cut(s)	61, 370, 383, 532
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	238, 470
Tsp45I	GTSAC	2 cut(s)	238, 470
TspDTI	ATGAA	2 cut(s)	66, 104
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	12, 543
XapI	RAATTY	2 cut(s)	370, 383
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.